Role of Extracellular Carbonic Anhydrase in Dissolved Inorganic Carbon Uptake in Alkaliphilic Phototrophic Biofilm

Alkaline Soda Lakes are extremely productive ecosystems, due to their high dissolved inorganic carbon (DIC) concentrations. Here, we studied the dynamics of the carbonate system, in particular, the role of extracellular carbonic anhydrase (eCA) of an alkaliphilic phototrophic biofilm composed of bacteria enriched from soda lake benthic mats. By using measurements with microsensors and membrane inlet mass spectrometry, combined with mathematical modeling, we show how eCA controls DIC uptake. In our experiments, the activity of eCA varied four-fold, and was controlled by the bicarbonate concentration during growth: a higher bicarbonate concentration led to lower eCA activity. Inhibition of eCA decreased both the net and the gross photosynthetic productivities of the investigated biofilms. After eCA inhibition, the efflux of carbon dioxide (CO2) from the biofilms increased two- to four-fold. This could be explained by the conversion of CO2, leaking from cyanobacterial cells, by eCA, to bicarbonate. Bicarbonate is then taken up again by the cyanobacteria. In suspensions, eCA reduced the CO2 leakage to the bulk medium from 90 to 50%. In biofilms cultivated at low bicarbonate concentration (~0.13 mM), the oxygen production was reduced by a similar ratio upon eCA inhibition. The role of eCA in intact biofilms was much less significant compared to biomass suspensions, as CO2 loss to the medium is reduced due to mass transfer resistance.

[1]  M. Strous,et al.  Robust, high-productivity phototrophic carbon capture at high pH and alkalinity using natural microbial communities , 2017, Biotechnology for Biofuels.

[2]  N. I. H. Mustaffa,et al.  Extracellular carbonic anhydrase: Method development and its application to natural seawater , 2017, Limnology and oceanography, methods.

[3]  C. Supuran Structure and function of carbonic anhydrases. , 2016, The Biochemical journal.

[4]  C. Kerfeld,et al.  Assembly, function and evolution of cyanobacterial carboxysomes. , 2016, Current opinion in plant biology.

[5]  M. Kühl,et al.  Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats , 2015, Front. Microbiol..

[6]  Lubos Polerecky,et al.  Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations , 2014, Front. Microbiol..

[7]  Alain Vande Wouwer,et al.  Finite Differences and the Method of Lines , 2014 .

[8]  J. Rasaiah,et al.  Proton transfer and the diffusion of H+ and OH- ions along water wires. , 2013, The Journal of chemical physics.

[9]  J. Murrell,et al.  Microbiology of Lonar Lake and other soda lakes , 2012, The ISME Journal.

[10]  Chen Shen,et al.  Quantification of Extracellular Carbonic Anhydrase Activity in Two Marine Diatoms and Investigation of Its Role1[W][OA] , 2013, Plant Physiology.

[11]  T. Prartono,et al.  Growth and Extracellular Carbonic Anhydrase Activity of Zooxanthellae Symbiodinium sp. in Response of Zinc Enrichment , 2011 .

[12]  D. Los,et al.  Extracellular β-class carbonic anhydrase of the alkaliphilic cyanobacterium Microcoleus chthonoplastes. , 2011, Journal of Photochemistry and Photobiology. B: Biology.

[13]  N. Pimenov,et al.  Primary production of organic matter and phototrophic communities in the soda lakes of the Kulunda steppe (Altai krai) , 2009, Microbiology.

[14]  M. Badger,et al.  On-line mass spectrometry: membrane inlet sampling , 2009, Photosynthesis Research.

[15]  J. Mercado,et al.  EFFECT OF CARBONIC ANHYDRASE INHIBITORS ON THE INORGANIC CARBON UPTAKE BY PHYTOPLANKTON NATURAL ASSEMBLAGES 1 , 2009, Journal of phycology.

[16]  Charles S Cockell,et al.  The evolution of inorganic carbon concentrating mechanisms in photosynthesis , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[17]  M. Badger,et al.  Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants. , 2008, Journal of experimental botany.

[18]  P. Tortell,et al.  Isotope disequilibrium and mass spectrometric studies of inorganic carbon acquisition by phytoplankton , 2007 .

[19]  M. V. van Loosdrecht,et al.  Kinetic modeling of phototrophic biofilms: The PHOBIA model , 2007, Biotechnology and bioengineering.

[20]  D. Los,et al.  Extracellular carbonic anhydrases of the stromatolite-forming cyanobacterium Microcoleus chthonoplastes. , 2007, Microbiology.

[21]  U. Riebesell,et al.  Determination of the rate constants for the carbon dioxide to bicarbonate inter-conversion in pH-buffered seawater systems , 2006 .

[22]  J. Raven,et al.  CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. , 2005, Annual review of plant biology.

[23]  S. Howitt,et al.  Identification of a SulP-type bicarbonate transporter in marine cyanobacteria , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[24]  G. Zavarzin,et al.  Carbonic Anhydrase Activity of Alkalophilic Cyanobacteria from Soda Lakes , 2003, Russian Journal of Plant Physiology.

[25]  J. Reuter,et al.  Vertical profiles of primary productivity, biomass and physico-chemical properties in meromictic Big Soda Lake, Nevada, U.S.A. , 1982, Hydrobiologia.

[26]  7. Photosynthetic activity of phytoplankton in tropical African soda lakes , 2004, Hydrobiologia.

[27]  R. Feely,et al.  Dissociation constants for carbonic acid determined from field measurements , 2002 .

[28]  H. Fukuzawa,et al.  Genes Essential to Sodium-dependent Bicarbonate Transport in Cyanobacteria , 2002, The Journal of Biological Chemistry.

[29]  J. R. Coleman Carbonic Anhydrase and Its Role in Photosynthesis , 2000 .

[30]  E. Epping,et al.  Photosynthesis and the dynamics of oxygen consumption in a microbial mat as calculated from transient oxygen microprofiles , 1999 .

[31]  T. Ogawa,et al.  Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[32]  N. Nimer,et al.  Extracellular carbonic anhydrase facilitates carbon dioxide availability for photosynthesis in the marine dinoflagellate prorocentrum micans , 1999, Plant physiology.

[33]  G H Dibdin,et al.  Mathematical Modeling of Biofilms , 1997, Advances in dental research.

[34]  M. Kühl,et al.  A nitrite microsensor for profiling environmental biofilms , 1997, Applied and environmental microbiology.

[35]  J. Kreuter Nanoparticles and microparticles for drug and vaccine delivery. , 1996, Journal of anatomy.

[36]  Andrew G. Dickson,et al.  Handbook of methods for the analysis of the various parameters of the carbon dioxide system in sea water. Version 2 , 1994 .

[37]  M. Badger,et al.  Carbonic anhydrase activity and inorganic carbon fluxes in low‐ and high‐C1 cells of Chlamydomonas reinhardtü and Scenedesmus obliquus , 1994 .

[38]  L. Nielsen,et al.  Microscale Distribution of Nitrification Activity in Sediment Determined with a Shielded Microsensor for Nitrate , 1993, Applied and environmental microbiology.

[39]  F. Stagnitti,et al.  Dissolved oxygen concentrations in hypersaline waters , 1991 .

[40]  N. Revsbech,et al.  An oxygen microsensor with a guard cathode , 1989 .

[41]  S. Miyachi,et al.  Carbonic anhydrase and CO2 concentrating mechanisms in microalgae and cyanobacteria , 1986 .

[42]  B. Jørgensen,et al.  Photosynthesis of benthic microflora measured with high spatial resolution by the oxygen microprofile method: Capabilities and limitations of the method1 , 1983 .

[43]  Kenneth S. Johnson,et al.  Carbon dioxide hydration and dehydration kinetics in seawater1 , 1982 .

[44]  B. Jørgensen,et al.  Primary production of microalgae in sediments measured by oxygen microprofile, H14CO3 ‐ fixation, and oxygen exchange methods1 , 1981 .

[45]  S. Lindskog,et al.  The catalytic mechanism of carbonic anhydrase. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Manfred Eigen,et al.  Proton Transfer, Acid-Base Catalysis, and Enzymatic Hydrolysis. Part I: ELEMENTARY PROCESSES†‡ , 1964 .