High prevalence of SARS‐CoV‐2 and influenza A virus (H1N1) coinfection in dead patients in Northeastern Iran

In the last months of 2019, an outbreak of fatal respiratory disease started in Wuhan, China, and quickly spread to other parts of the world. It was named COVID‐19, and to date, thousands of cases of infection and death are reported worldwide. This disease is associated with a wide range of symptoms, which makes accurate diagnosis of it difficult. During previous severe acute respiratory syndrome (SARS) pandemic in 2003, researchers found that the patients with fever, cough, or sore throat had a 5% influenza virus‐positive rate. This finding made us think that the wide range of symptoms and also relatively high prevalence of death in our patients may be due to the coinfection with other viruses. Thus, we evaluated the coinfection of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) with other respiratory viruses in dead patients in North Khorasan. We evaluated the presence of influenza A/B virus, human metapneumovirus, bocavirus, adenovirus, respiratory syncytial virus (RSV), and parainfluenza viruses in 105 SARS‐CoV‐2 positive dead patients, using polymerase chain reaction (PCR) and reverse transcription PCR tests. We found coinfection with influenza virus in 22.3%, RSV, and bocavirus in 9.7%, parainfluenza viruses in 3.9%, human metapneumovirus in 2.9%, and finally adenovirus in 1.9% of SARS‐CoV‐2 positive dead cases. Our findings highlight a high prevalence of coinfection with influenza A virus and the monopoly of coinfection with Human metapneumovirus in children.

[1]  S. Antony,et al.  Are coinfections with COVID‐19 and influenza low or underreported? An observational study examining current published literature including three new unpublished cases , 2020, Journal of medical virology.

[2]  P. Zhou,et al.  The epidemiology and clinical characteristics of co‐infection of SARS‐CoV‐2 and influenza viruses in patients during COVID‐19 outbreak , 2020, Journal of medical virology.

[3]  D. Nixon,et al.  Epidemiological evidence for association between higher influenza vaccine uptake in the elderly and lower COVID‐19 deaths in Italy , 2020, Journal of medical virology.

[4]  R. Ozaras,et al.  Influenza and COVID‐19 coinfection: Report of six cases and review of the literature , 2020, Journal of medical virology.

[5]  H. Abad,et al.  Co‐infection with COVID‐19 and influenza A virus in two died patients with acute respiratory syndrome, Bojnurd, Iran , 2020, Journal of medical virology.

[6]  D. Kaul Corrigendum to ‘An Overview of Coronaviruses including the SARS-2 Coronavirus – Molecular Biology, Epidemiology and Clinical Implications’ [Cur Med Res Pract. (2019) Vol. 10, pages 54–64]. , 2020, Current Medicine Research and Practice.

[7]  E. Sordillo,et al.  Coinfection in SARS‐CoV‐2 infected patients: Where are influenza virus and rhinovirus/enterovirus? , 2020, Journal of medical virology.

[8]  Ming Wang,et al.  Coinfection of SARS-CoV-2 and multiple respiratory pathogens in children , 2020, Clinical chemistry and laboratory medicine.

[9]  N. Shah,et al.  Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens. , 2020, JAMA.

[10]  De-Guang Kong,et al.  SARS-CoV-2 detection in patients with influenza-like illness , 2020, Nature Microbiology.

[11]  Q. Ding,et al.  The clinical characteristics of pneumonia patients coinfected with 2019 novel coronavirus and influenza virus in Wuhan, China , 2020, Journal of medical virology.

[12]  J. Lonks,et al.  Co-infection with SARS-CoV-2 and Human Metapneumovirus. , 2020, Rhode Island medical journal.

[13]  E. Holmes,et al.  The proximal origin of SARS-CoV-2 , 2020, Nature Medicine.

[14]  Yongjun Li,et al.  Co-infection with SARS-CoV-2 and Influenza A Virus in Patient with Pneumonia, China , 2020, Emerging infectious diseases.

[15]  Dinesh Kaul,et al.  An overview of coronaviruses including the SARS-2 coronavirus – Molecular biology, epidemiology and clinical implications , 2020, Current Medicine Research and Practice.

[16]  Tiangang Liu,et al.  Clinical diagnosis of 8274 samples with 2019-novel coronavirus in Wuhan , 2020, medRxiv.

[17]  M. Gouya,et al.  Demographic, clinical, and virological characteristics of patients with a laboratory-confirmed diagnosis of influenza during three consecutive seasons, 2015/2016-2017/18, in the Islamic Republic of Iran. , 2020, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[18]  M. Aarabi,et al.  Prevalence of Influenza A/H1N1 Virus in North of Iran, 2013 to 2017 , 2019 .

[19]  M. Karami,et al.  Comparative evaluation of time series models for predicting influenza outbreaks: application of influenza-like illness data from sentinel sites of healthcare centers in Iran , 2019, BMC Research Notes.

[20]  M. Farhadian,et al.  Seasonal Activity of Influenza in Iran: Application of Influenza-like Illness Data from Sentinel Sites of Healthcare Centers during 2010 to 2015 , 2018, Journal of epidemiology and global health.

[21]  F. Behzadian,et al.  Prevalence of human influenza virus in Iran: Evidence from a systematic review and meta-analysis. , 2018, Microbial pathogenesis.

[22]  Helen H. Lee,et al.  Duplex Molecular Assay Intended for Point-of-Care Diagnosis of Influenza A/B Virus Infection , 2013, Journal of Clinical Microbiology.

[23]  Rezai Mohammad Sadegh,et al.  Prevalence of Influenza A/H1N1 Virus in North of Iran (Mazandaran), 2009-2011 , 2012 .

[24]  F. Rezaei,et al.  Molecular Detection of Respiratory Viruses in Clinical Specimens From Children With Acute Respiratory Disease in Iran , 2010, The Pediatric infectious disease journal.

[25]  Gavin J. D. Smith,et al.  Molecular Detection of a Novel Human Influenza (H1N1) of Pandemic Potential by Conventional and Real-Time Quantitative RT-PCR Assays , 2009, Clinical chemistry.