Metagenomic gene discovery: past, present and future.
暂无分享,去创建一个
William Stafford | Don Cowan | W. Stafford | D. Cowan | Quinton Meyer | Samson Muyanga | Rory Cameron | Pia Wittwer | P. Wittwer | R. Cameron | S. Muyanga | Q. Meyer
[1] J. Murrell,et al. Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms. , 2003, Current opinion in biotechnology.
[2] David L. Kirchman,et al. Chitinases from Uncultured Marine Microorganisms , 1999, Applied and Environmental Microbiology.
[3] W. Whitman,et al. Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[4] E. Stackebrandt,et al. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species , 1995, Applied and environmental microbiology.
[5] E. Delong,et al. Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon , 1996, Journal of bacteriology.
[6] H. Bürgmann,et al. A strategy for optimizing quality and quantity of DNA extracted from soil. , 2001, Journal of microbiological methods.
[7] Reference cDNA library facilities available from European sources , 1998, Molecular biotechnology.
[8] James Borneman,et al. Culture-Independent Identification of Microorganisms That Respond to Specified Stimuli , 1999, Applied and Environmental Microbiology.
[9] Jonathan D. Trent,et al. DNA from Uncultured Organisms as a Source of 2,5-Diketo-d-Gluconic Acid Reductases , 2001, Applied and Environmental Microbiology.
[10] Cindy H. Nakatsu,et al. Development of Catechol 2,3-Dioxygenase-Specific Primers for Monitoring Bioremediation by Competitive Quantitative PCR , 2000, Applied and Environmental Microbiology.
[11] J. Handelsman,et al. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. , 1998, Chemistry & biology.
[12] Rosie Yu,et al. Reduction of liver Fas expression by an antisense oligonucleotide protects mice from fulminant hepatitis , 2000, Nature Biotechnology.
[13] Mark J. Bailey,et al. RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny , 2002, Applied and Environmental Microbiology.
[14] S. Giovannoni,et al. The uncultured microbial majority. , 2003, Annual review of microbiology.
[15] K. Wallenius,et al. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. , 2001, Journal of microbiological methods.
[16] R. Amann,et al. Application of tetranucleotide frequencies for the assignment of genomic fragments. , 2004, Environmental microbiology.
[17] M. Frischer,et al. Whole-Cell versus Total RNA Extraction for Analysis of Microbial Community Structure with 16S rRNA-Targeted Oligonucleotide Probes in Salt Marsh Sediments , 2000, Applied and Environmental Microbiology.
[18] N. Sonenberg,et al. An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture) , 1995, Molecular and cellular biology.
[19] T. Schmidt,et al. New Strategies for Cultivation and Detection of Previously Uncultured Microbes , 2004, Applied and Environmental Microbiology.
[20] W Bautsch,et al. Rapid cloning by homologous recombination in vivo. , 1993, Nucleic acids research.
[21] N. Pace,et al. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. , 1996, Trends in biotechnology.
[22] G. Gottschalk,et al. Construction of Environmental DNA Libraries inEscherichia coli and Screening for the Presence of Genes Conferring Utilization of 4-Hydroxybutyrate , 1999, Applied and Environmental Microbiology.
[23] Pascale Jeannin,et al. Recombinant Environmental Libraries Provide Access to Microbial Diversity for Drug Discovery from Natural Products , 2003, Applied and Environmental Microbiology.
[24] R. N. Mishra,et al. Directional genome walking using PCR. , 2002, BioTechniques.
[25] A. van der Ende,et al. Representational difference analysis. , 2001, Methods in molecular medicine.
[26] J. Tiedje,et al. DNA recovery from soils of diverse composition , 1996, Applied and environmental microbiology.
[27] Rolf Daniel,et al. Metagenomes of Complex Microbial Consortia Derived from Different Soils as Sources for Novel Genes Conferring Formation of Carbonyls from Short-Chain Polyols on Escherichia coli , 2003, Journal of Molecular Microbiology and Biotechnology.
[28] V. Duranthon,et al. PCR-generated cDNA libraries from reduced numbers of mouse oocytes , 1995, Zygote.
[29] J. Handelsman,et al. Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms , 2000, Applied and Environmental Microbiology.
[30] William D. Grant,et al. Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods , 2004, Extremophiles.
[31] Piero Carninci,et al. High-efficiency full-length cDNA cloning by biotinylated CAP trapper. , 1996, Genomics.
[32] R. Ramaswamy,et al. Ab initio gene identification: Prokaryote genome annotation with GeneScan and GLIMMER , 2002, Journal of Biosciences.
[33] E. Delong,et al. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing , 1991, Journal of bacteriology.
[34] Dick B Janssen,et al. Quantifying the accessibility of the metagenome by random expression cloning techniques. , 2004, Environmental microbiology.
[35] D. Cowan. Microbial genomes--the untapped resource. , 2000, Trends in biotechnology.
[36] Stanley Falkow,et al. Improved analytical methods for microarray-based genome-composition analysis , 2002, Genome Biology.
[37] A van der Ende,et al. Representational difference analysis of Neisseria meningitidis identifies sequences that are specific for the hyper-virulent lineage III clone. , 2000, FEMS microbiology letters.
[38] J. Simons,et al. Open systems: panoramic views of gene expression. , 2001, Journal of immunological methods.
[39] R. Conrad,et al. Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane , 2000, Applied and Environmental Microbiology.
[40] James Borneman,et al. Bacterial Functional Redundancy along a Soil Reclamation Gradient , 2000, Applied and Environmental Microbiology.
[41] H. Sive,et al. Subtractive cloning: past, present, and future. , 1997, Annual review of biochemistry.
[42] K. Schleifer,et al. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.
[43] R. Crameri,et al. Display of biologically active proteins on the surface of filamentous phages: a cDNA cloning system for selection of functional gene products linked to the genetic information responsible for their production. , 1993, Gene.
[44] B. Spratt,et al. Representational difference analysis of cDNA for the detection of differential gene expression in bacteria: development using a model of iron-regulated gene expression in Neisseria meningitidis. , 1999, Microbiology.
[45] W. Gelbart,et al. Universal Fast Walking for direct and versatile determination of flanking sequence. , 2002, Gene.
[46] D. B. Nedwell,et al. Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing. , 2002, Microbiology.
[47] E. Madsen,et al. Evaluation and Optimization of DNA Extraction and Purification Procedures for Soil and Sediment Samples , 1999, Applied and Environmental Microbiology.
[48] Karen E Nelson,et al. The future of microbial genomics. , 2003, Environmental microbiology.
[49] G. Braker,et al. Development of PCR Primer Systems for Amplification of Nitrite Reductase Genes (nirK and nirS) To Detect Denitrifying Bacteria in Environmental Samples , 1998, Applied and Environmental Microbiology.
[50] Kazuya Watanabe,et al. Molecular Detection, Isolation, and Physiological Characterization of Functionally Dominant Phenol-Degrading Bacteria in Activated Sludge , 1998, Applied and Environmental Microbiology.
[51] Oded Béjà,et al. To BAC or not to BAC: marine ecogenomics. , 2004, Current opinion in biotechnology.
[52] D. Cullen,et al. Quantitation of fungal mRNAs in complex substrates by reverse transcription PCR and its application to Phanerochaete chrysosporium-colonized soil , 1995, Applied and environmental microbiology.
[53] G. Gottschalk,et al. Screening of Environmental DNA Libraries for the Presence of Genes Conferring Na+(Li+)/H+Antiporter Activity on Escherichia coli: Characterization of the Recovered Genes and the Corresponding Gene Products , 2001, Journal of bacteriology.
[54] Yaoguang Liu,et al. Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. , 1995, Genomics.
[55] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[56] J. Handelsman,et al. Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. , 2001, Organic letters.
[57] S. Salzberg,et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae , 2000, Nature.
[58] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[59] J. Murrell,et al. Detection of methanotrophic bacteria in environmental samples with the PCR , 1995, Applied and environmental microbiology.
[60] S. Harayama,et al. PCR isolation of catechol 2,3-dioxygenase gene fragments from environmental samples and their assembly into functional genes. , 1998, Gene.
[61] E. Koonin,et al. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. , 2000, Environmental microbiology.
[62] Shigeaki Harayama,et al. Group-Specific Monitoring of Phenol Hydroxylase Genes for a Functional Assessment of Phenol-Stimulated Trichloroethylene Bioremediation , 2001, Applied and Environmental Microbiology.
[63] Jo Handelsman,et al. Biotechnological prospects from metagenomics. , 2003, Current opinion in biotechnology.
[64] Bryan A White,et al. Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model. , 2004, Environmental microbiology.
[65] R. Conrad,et al. Molecular Analyses of the Methane-Oxidizing Microbial Community in Rice Field Soil by Targeting the Genes of the 16S rRNA, Particulate Methane Monooxygenase, and Methanol Dehydrogenase , 1999, Applied and Environmental Microbiology.
[66] P. Nowell,et al. Panhandle PCR for cDNA: a rapid method for isolation of MLL fusion transcripts involving unknown partner genes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[67] F. Ayala,et al. Use of polymerase chain reaction to amplify segments outside boundaries of known sequences. , 1993, Methods in enzymology.
[68] R M Hall,et al. Site-specific deletion and rearrangement of integron insert genes catalyzed by the integron DNA integrase , 1992, Journal of bacteriology.
[69] Philip Hugenholtz,et al. Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity , 1998, Journal of bacteriology.
[70] E. Wellington,et al. Comparison of different methods for the isolation and purification of total community DNA from soil. , 1999, Journal of microbiological methods.
[71] S. Borin,et al. PCR-based detection of mobile genetic elements in total community DNA. , 2000, Microbiology.
[72] J. Sebat,et al. Metagenomic Profiling: Microarray Analysis of an Environmental Genomic Library , 2003, Applied and Environmental Microbiology.
[73] D. Mazel,et al. Integrons: natural tools for bacterial genome evolution. , 2001, Current opinion in microbiology.
[74] P M Bennett,et al. Integrons and gene cassettes: a genetic construction kit for bacteria. , 1999, The Journal of antimicrobial chemotherapy.
[75] S. Giovannoni,et al. Immunochemical Detection and Isolation of DNA from Metabolically Active Bacteria , 1999, Applied and Environmental Microbiology.
[76] J. Trevors,et al. Bacterial genomics: the use of DNA microarrays and bacterial artificial chromosomes. , 2002, Journal of microbiological methods.
[77] L. Øvreås,et al. Microbial diversity and function in soil: from genes to ecosystems. , 2002, Current opinion in microbiology.
[78] J. Hughes,et al. New approaches to analyzing microbial biodiversity data. , 2003, Current opinion in microbiology.
[79] Y T Wang,et al. Rapid detection of polyhydroxyalkanoate-accumulating bacteria isolated from the environment by colony PCR. , 2000, Microbiology.
[80] V. Demidov,et al. Duplex DNA capture. , 2000, Current issues in molecular biology.
[81] R. Griffiths,et al. Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition , 2000, Applied and Environmental Microbiology.
[82] Rolf Daniel,et al. The soil metagenome--a rich resource for the discovery of novel natural products. , 2004, Current opinion in biotechnology.
[83] E. Madsen,et al. In Situ, Real-Time Catabolic Gene Expression: Extraction and Characterization of Naphthalene Dioxygenase mRNA Transcripts from Groundwater , 1999, Applied and Environmental Microbiology.
[84] Dorothea K. Thompson,et al. Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment , 2001, Applied and Environmental Microbiology.
[85] K. M. Helena Nevalainen,et al. Gene Cassette PCR: Sequence-Independent Recovery of Entire Genes from Environmental DNA , 2001, Applied and Environmental Microbiology.
[86] D. Mazel,et al. Resistance gene capture. , 1999, Current opinion in microbiology.
[87] G. Gottschalk,et al. Screening of Environmental DNA Libraries for the Presence of Genes Conferring Lipolytic Activity onEscherichia coli , 2000, Applied and Environmental Microbiology.
[88] Myriam Harry,et al. Extraction and purification of microbial DNA from soil and sediment samples , 2001 .
[89] L. Raskin,et al. The Presence of Humic Substances and DNA in RNA Extracts Affects Hybridization Results , 2000, Applied and Environmental Microbiology.
[90] Sara Hallin,et al. PCR Detection of Genes Encoding Nitrite Reductase in Denitrifying Bacteria , 1999, Applied and Environmental Microbiology.