Pyrosequencing reveals bacterial community differences in composting and vermicomposting on the stabilization of mixed sewage sludge and cattle dung

[1]  Fusheng Li,et al.  Changes of bacterial and fungal community compositions during vermicomposting of vegetable wastes by Eisenia foetida. , 2013, Bioresource technology.

[2]  Jun Ma,et al.  Microbial community structures in a closed raw water distribution system biofilm as revealed by 454-pyrosequencing analysis and the effect of microbial biofilm communities on raw water quality. , 2013, Bioresource technology.

[3]  H H Ngo,et al.  Characteristics of nitrogen transformation and microbial community in an aerobic composting reactor under two typical temperatures. , 2013, Bioresource technology.

[4]  Vidya de Gannes,et al.  Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing. , 2013, Bioresource technology.

[5]  Q. Shen,et al.  Succession of bacterial communities during composting process as detected by 16S rRNA clone libraries analysis , 2013 .

[6]  Zhiwei Wang,et al.  Correlating microbial community structure and composition with aeration intensity in submerged membrane bioreactors by 454 high-throughput pyrosequencing. , 2013, Water research.

[7]  Xu Huang,et al.  Evolution of microbial community diversity and enzymatic activity during composting. , 2013, Research in microbiology.

[8]  J. Leahy,et al.  Effect of sawdust addition on composting of separated raw and anaerobically digested pig manure. , 2012, Journal of environmental management.

[9]  Zhibo Lu,et al.  Effect of earthworms on the performance and microbial communities of excess sludge treatment process in vermifilter. , 2012, Bioresource technology.

[10]  Nanqi Ren,et al.  Pyrosequencing reveals highly diverse microbial communities in microbial electrolysis cells involved in enhanced H2 production from waste activated sludge. , 2012, Water research.

[11]  Heribert Insam,et al.  Use of DGGE and COMPOCHIP for investigating bacterial communities of various vermicomposts produced from different wastes under dissimilar conditions. , 2012, The Science of the total environment.

[12]  A. Esposito,et al.  Two-phase olive mill waste composting: community dynamics and functional role of the resident microbiota. , 2011, Bioresource technology.

[13]  J. Domínguez,et al.  Changes in microbial community structure and function during vermicomposting of pig slurry. , 2011, Bioresource technology.

[14]  Heribert Insam,et al.  Continuous-feeding vermicomposting as a recycling management method to revalue tomato-fruit wastes from greenhouse crops. , 2010, Waste management.

[15]  Robert C. Edgar,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2001 .

[16]  S. Dowd,et al.  Pyrosequencing analysis for characterization of soil bacterial populations as affected by an integrated livestock-cotton production system , 2010 .

[17]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[18]  Paramvir S. Dehal,et al.  FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.

[19]  R. Knight,et al.  Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data , 2009, The ISME Journal.

[20]  J. Domínguez,et al.  Vermicomposting: Earthworms Enhance the Work of Microbes , 2010 .

[21]  P. Auvinen,et al.  Bacterial diversity at different stages of the composting process , 2010, BMC Microbiology.

[22]  Zubair Aslam,et al.  Bacterial community composition and chitinase gene diversity of vermicompost with antifungal activity. , 2009, Bioresource technology.

[23]  T. Nechitaylo,et al.  Culturable microorganisms from the earthworm digestive tract , 2009, Microbiology.

[24]  J. Domínguez,et al.  Changes in bacterial numbers and microbial activity of pig slurry during gut transit of epigeic and anecic earthworms. , 2009, Journal of hazardous materials.

[25]  J. Adams,et al.  Analysis of bacterial activity, biomass and diversity during windrow composting. , 2009, Waste management.

[26]  A. Vivas,et al.  Assessing the impact of composting and vermicomposting on bacterial community size and structure, and microbial functional diversity of an olive-mill waste. , 2009, Bioresource technology.

[27]  T. Chandra,et al.  Do earthworms affect dynamics of functional response and genetic structure of microbial community in a lab-scale composting system? , 2009, Bioresource technology.

[28]  Analiza P. Rollon,et al.  Comparison of organic matter degradation and microbial community during thermophilic composting of two different types of anaerobic sludge. , 2009, Bioresource technology.

[29]  C. Hajdu,et al.  DGGE and T-RFLP Analysis of Bacterial Succession during Mushroom Compost Production and Sequence-aided T-RFLP Profile of Mature Compost , 2009, Microbial Ecology.

[30]  A. Fodor,et al.  Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing , 2008, Applied and Environmental Microbiology.

[31]  K. Miyauchi,et al.  Successions of bacterial community in composting cow dung wastes with or without hyperthermophilic pre-treatment , 2008, Applied Microbiology and Biotechnology.

[32]  Jorge Domínguez,et al.  Comparison of the effectiveness of composting and vermicomposting for the biological stabilization of cattle manure. , 2008, Chemosphere.

[33]  H. Insam,et al.  Molecular analysis of bacterial community succession during prolonged compost curing. , 2008, FEMS microbiology ecology.

[34]  J. Connolly,et al.  The effects of earthworm functional diversity on microbial biomass and the microbial community level physiological profile of soils , 2008 .

[35]  A. Kurakov,et al.  Fate of soil bacteria and fungi in the gut of earthworms , 2007 .

[36]  G. Casella,et al.  Pyrosequencing enumerates and contrasts soil microbial diversity , 2007, The ISME Journal.

[37]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[38]  Gary L. Andersen,et al.  High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment , 2007, Microbial Ecology.

[39]  J. Domínguez,et al.  Using FAME profiles for the characterization of animal wastes and vermicomposts , 2006 .

[40]  C. Tebbe,et al.  Bacterial diversity in a finished compost and vermicompost: differences revealed by cultivation-independent analyses of PCR-amplified 16S rRNA genes , 2006, Applied Microbiology and Biotechnology.

[41]  M. Nashimoto,et al.  Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. , 2006, Journal of bioscience and bioengineering.

[42]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[43]  S. M. Tiquia.  Microbial Community Dynamics in Manure Composts Based on 16S and 18S rDNA T-RFLP Profiles , 2005, Environmental technology.

[44]  James R. Knight,et al.  Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.

[45]  R. Villemur,et al.  Analysis of the bacterial community inhabiting an aerobic thermophilic sequencing batch reactor (AT-SBR) treating swine waste , 2004, Applied Microbiology and Biotechnology.

[46]  M. Kimura,et al.  Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis , 2003 .

[47]  W. Ghiorse,et al.  Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. , 2001, FEMS microbiology ecology.

[48]  C. E. SHANNON,et al.  A mathematical theory of communication , 1948, MOCO.

[49]  M. Fukui,et al.  Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis , 2000, Journal of applied microbiology.

[50]  M. Kimura,et al.  Microbial community indigenous to the earthworm Eisenia foetida , 2000, Biology and Fertility of Soils.

[51]  S. Scheu,et al.  Microbial biomass, biovolume and respiration in Lumbricus terrestris L. cast material of different age , 2000 .

[52]  H. Drake,et al.  Comparative assessment of the aerobic and anaerobic microfloras of earthworm guts and forest soils , 1995, Applied and environmental microbiology.

[53]  M. Luck,et al.  Genome sequencing , 1987, Nature.

[54]  K. Nakasaki,et al.  Characteristics of Mesophilic Bacteria Isolated during Thermophilic Composting of Sewage Sludge , 1985, Applied and environmental microbiology.