Chromatin accessibility plays a key role in selective targeting of Hox proteins
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[1] Johan Larsson. Area-Proportional Euler and Venn Diagrams with Ellipses [R package eulerr version 6.1.0] , 2020 .
[2] S. Russell,et al. Chromatin accessibility plays a key role in selective targeting of Hox proteins , 2018, Genome Biology.
[3] Pierre B. Cattenoz,et al. Embryonic hematopoiesis modulates the inflammatory response and larval hematopoiesis in Drosophila , 2018, eLife.
[4] M. Duffraisse,et al. Human HOX Proteins Use Diverse and Context-Dependent Motifs to Interact with TALE Class Cofactors. , 2018, Cell reports.
[5] Johan Larsson,et al. eulerr: Area-Proportional Euler Diagrams with Ellipses , 2018 .
[6] S. Levine,et al. The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription , 2017, The EMBO journal.
[7] A. Hau,et al. MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1 , 2017, The Journal of cell biology.
[8] Eric F Wieschaus,et al. Concentration dependent chromatin states induced by the bicoid morphogen gradient , 2017, bioRxiv.
[9] Aaron T. L. Lun,et al. csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows , 2015, Nucleic acids research.
[10] Oliver Bembom,et al. Sequence logos for DNA sequence alignments , 2016 .
[11] S. Russell,et al. Roles of cofactors and chromatin accessibility in Hox protein target specificity , 2016, Epigenetics & Chromatin.
[12] P. Provero,et al. Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells , 2015, PloS one.
[13] C. Brun,et al. Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo , 2015, eLife.
[14] R. Mann,et al. Deconvolving the Recognition of DNA Shape from Sequence , 2015, Cell.
[15] Y. Graba,et al. Cellular and molecular insights into Hox protein action , 2015, Development.
[16] M. Rattray,et al. Hoxa2 Selectively Enhances Meis Binding to Change a Branchial Arch Ground State , 2015, Developmental cell.
[17] R. Vincentelli,et al. A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode. , 2015, Structure.
[18] R. Mann,et al. Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness , 2015, Cell.
[19] Howard Y. Chang,et al. ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide , 2015, Current protocols in molecular biology.
[20] Martin H. Schaefer,et al. The cis‐regulatory code of Hox function in Drosophila , 2015, The EMBO journal.
[21] Elena Grassi. Obtain total affinity and occupancies for binding site matrices on a given sequence , 2015 .
[22] S. Choe,et al. TALE factors poise promoters for activation by Hox proteins. , 2014, Developmental cell.
[23] M. Torres,et al. Biochemistry of the tale transcription factors PREP, MEIS, and PBX in vertebrates , 2013, Developmental dynamics : an official publication of the American Association of Anatomists.
[24] Robert Gentleman,et al. Software for Computing and Annotating Genomic Ranges , 2013, PLoS Comput. Biol..
[25] Y. Graba,et al. Antagonism Versus Cooperativity with TALE Cofactors at the Base of the Functional Diversification of Hox Protein Function , 2013, PLoS genetics.
[26] Juan M. Vaquerizas,et al. DNA-Binding Specificities of Human Transcription Factors , 2013, Cell.
[27] Martin H. Schaefer,et al. The cis‐regulatory code of Hox function in Drosophila , 2012, The EMBO journal.
[28] R. Mann,et al. Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins , 2011, Cell.
[29] M. Biggin. Animal transcription networks as highly connected, quantitative continua. , 2011, Developmental cell.
[30] J. Stamatoyannopoulos,et al. The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding , 2011, Genome Biology.
[31] Eric F. Wieschaus,et al. The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized mRNA , 2011, PLoS biology.
[32] J. Stamatoyannopoulos,et al. Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development , 2011, PLoS genetics.
[33] Li Yang,et al. The transcriptional diversity of 25 Drosophila cell lines. , 2011, Genome research.
[34] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[35] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[36] Daniel E. Newburger,et al. Diversity and Complexity in DNA Recognition by Transcription Factors , 2009, Science.
[37] R. Mann,et al. Chapter 3 Hox Specificity , 2009 .
[38] R. Mann,et al. Hox specificity unique roles for cofactors and collaborators. , 2009, Current topics in developmental biology.
[39] Urs Kloter,et al. Evolution of the Hox gene complex from an evolutionary ground state. , 2009, Current topics in developmental biology.
[40] I. Lohmann,et al. Shaping segments: Hox gene function in the genomic age , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.
[41] G. Stormo,et al. Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites , 2008, Cell.
[42] Oliver Bembom,et al. seqLogo: An R package for plotting DNA sequence logos. , 2007 .
[43] Alexandre V. Morozov,et al. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE , 2006, ISMB.
[44] Joseph C. Pearson,et al. Modulating Hox gene functions during animal body patterning , 2005, Nature Reviews Genetics.
[45] A. Holder,et al. Antibody-based therapies for malaria , 2005, Nature Reviews Microbiology.
[46] S. Tapscott,et al. Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential. , 2004, Molecular cell.
[47] S. Carroll,et al. Hox repression of a target gene: extradenticle-independent, additive action through multiple monomer binding sites. , 2002, Development.
[48] T Marty,et al. Regulation of Hox target genes by a DNA bound Homothorax/Hox/Extradenticle complex. , 1999, Development.
[49] Michael L. Cleary,et al. Trimeric Association of Hox and TALE Homeodomain Proteins Mediates Hoxb2 Hindbrain Enhancer Activity , 1999, Molecular and Cellular Biology.
[50] L. Kömüves,et al. HOXA9 Forms Triple Complexes with PBX2 and MEIS1 in Myeloid Cells , 1999, Molecular and Cellular Biology.
[51] A. Giangrande,et al. glide/gcm is expressed and required in the scavenger cell lineage. , 1997, Developmental biology.
[52] P. Knoepfler,et al. The pentapeptide motif of Hox proteins is required for cooperative DNA binding with Pbx1, physically contacts Pbx1, and enhances DNA binding by Pbx1 , 1995, Molecular and cellular biology.
[53] C. Murre,et al. The hexapeptide LFPWMR in Hoxb-8 is required for cooperative DNA binding with Pbx1 and Pbx2 proteins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[54] I. Rambaldi,et al. Cooperative interactions between HOX and PBX proteins mediated by a conserved peptide motif , 1995, Molecular and cellular biology.
[55] M. Cleary,et al. Pbx proteins display hexapeptide-dependent cooperative DNA binding with a subset of Hox proteins. , 1995, Genes & development.
[56] G. Morata,et al. Colinearity and functional hierarchy among genes of the homeotic complexes. , 1994, Trends in genetics : TIG.
[57] C. Murre,et al. extradenticle Raises the DNA binding specificity of homeotic selector gene products , 1994, Cell.
[58] Juan Botas,et al. The DNA binding specificity of ultrabithorax is modulated by cooperative interactions with extradenticle, another homeoprotein , 1994, Cell.
[59] M. Biggin,et al. Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos. , 1994, Genes & development.
[60] S. Ekker,et al. Cooperative binding of an Ultrabithorax homeodomain protein to nearby and distant DNA sites , 1993, Molecular and cellular biology.
[61] G. Morata,et al. The developmental effect of overexpressing a Ubx product in Drosophila embryos is dependent on its interactions with other homeotic products , 1990, Cell.
[62] G. Morata,et al. Are cross-regulatory interactions between homoeotic genes functionally significant? , 1990, Nature.
[63] P. O’Farrell,et al. The sequence specificity of homeodomain-DNA interaction , 1988, Cell.
[64] H. Krause,et al. Expression, modification, and localization of the fushi tarazu protein in Drosophila embryos. , 1988, Genes & development.
[65] Robert A. H. White,et al. Regulation of the Ultrabithorax gene of drosophila by other bithorax complex genes , 1985, Cell.
[66] E. Hafen,et al. Regulation of Antennapedia transcript distribution by the bithorax complex in Drosophila , 1984, Nature.
[67] G. Struhl. Role of the esc+ gene product in ensuring the selective expression of segment-specific homeotic genes in Drosophila. , 1983, Journal of embryology and experimental morphology.
[68] E. Lewis. A gene complex controlling segmentation in Drosophila , 1978, Nature.