Specific epigenetic alterations of IGF2-H19 locus in spermatozoa from infertile men

DNA methylation marks, a key modification of imprinting, are erased in primordial germ cells and sex specifically re-established during gametogenesis. Abnormal epigenetic programming has been proposed as a possible mechanism compromising male fertility. We analysed by pyrosequencing the DNA methylation status of 47 CpGs located in differentially methylated regions (DMRs), the DMR0 and DMR2 of the IGF2 gene and in the 3rd and 6th CTCF-binding sites of the H19 DMR in human sperm from men with normal semen and patients with teratozoospermia (T) and/or oligo-astheno-teratozoospermia (OAT). All normal semen samples presented the expected high global methylation level for all CpGs analysed. In the teratozoospermia group, 11 of 19 patients presented a loss of methylation at variable CpG positions either in the IGF2 DMR2 or in both the IGF2 DMR2 and the 6th CTCF of the H19 DMR. In the OAT group, 16 of 22 patients presented a severe loss of methylation of the 6th CTCF, closely correlated with sperm concentration. The methylation state of DMR0 and of the 3rd CTCF was never affected by the pathological status of sperm samples. This study demonstrates that epigenetic perturbations of the 6th CTCF site of the H19 DMR might be a relevant biomarker for quantitative defects of spermatogenesis in humans. Moreover, we defined a methylation threshold sustaining the classification of patients in two groups, unmethylated and methylated. Using this new classification of patients, the observed intrinsic imprinting defects of spermatozoa appear not to impair significantly the outcome of assisted reproductive technologies.

[1]  W. Reik,et al.  Beckwith-Wiedemann syndrome and assisted reproduction technology (ART) , 2003, Journal of medical genetics.

[2]  Ivo G Gut,et al.  DNA methylation analysis by pyrosequencing , 2007, Nature Protocols.

[3]  A. Feinberg,et al.  Loss of IGF2 Imprinting: A Potential Marker of Colorectal Cancer Risk , 2003, Science.

[4]  B Pickard,et al.  Imprinting mechanisms. , 1998, Genome research.

[5]  N. Yaegashi,et al.  Aberrant DNA methylation of imprinted loci in sperm from oligospermic patients. , 2007, Human molecular genetics.

[6]  Subhasis Banerjee,et al.  Chromatin modification of imprinted H19 gene in mammalian spermatozoa , 1998, Molecular reproduction and development.

[7]  J. Arand,et al.  Epigenetic Reprogramming in Mammalian Development , 2012 .

[8]  S. Krawetz,et al.  The Structural Organization of Sperm Chromatin* , 2003, Journal of Biological Chemistry.

[9]  M. Sousa,et al.  Genomic imprinting in disruptive spermatogenesis , 2004, The Lancet.

[10]  M. Sousa,et al.  Abnormal methylation of imprinted genes in human sperm is associated with oligozoospermia. , 2008, Molecular human reproduction.

[11]  Nora Engel,et al.  Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking , 2008, Human molecular genetics.

[12]  Diana S Chu,et al.  Sperm Chromatin , 2008, Molecular & Cellular Proteomics.

[13]  H. Cedar,et al.  Dynamics of DNA methylation during development , 1993, BioEssays : news and reviews in molecular, cellular and developmental biology.

[14]  A. Reeve,et al.  Relaxation of IGF2 imprinting in Wilms tumours associated with specific changes in IGF2 methylation , 1999, Oncogene.

[15]  Andrew P Feinberg,et al.  Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19. , 2003, American journal of human genetics.

[16]  J. Weitzman Loss of imprinting in colorectal cancer , 2001, Genome Biology.

[17]  Antoine Flahault,et al.  In vitro fertilization may increase the risk of Beckwith-Wiedemann syndrome related to the abnormal imprinting of the KCN1OT gene. , 2003, American journal of human genetics.

[18]  W. Reik,et al.  Developmental control of allelic methylation in the imprinted mouse Igf2 and H19 genes. , 1994, Development.

[19]  W. Reik,et al.  Epigenetic modifications in an imprinting cluster are controlled by a hierarchy of DMRs suggesting long-range chromatin interactions. , 2003, Human molecular genetics.

[20]  P. Laird,et al.  Widespread Epigenetic Abnormalities Suggest a Broad DNA Methylation Erasure Defect in Abnormal Human Sperm , 2007, PloS one.

[21]  Yoko Ito,et al.  Distinct Methylation Changes at the IGF2-H19 Locus in Congenital Growth Disorders and Cancer , 2008, PloS one.

[22]  T. Bestor,et al.  Windows for sex-specific methylation marked by DNA methyltransferase expression profiles in mouse germ cells. , 2004, Developmental biology.

[23]  L. Cuisset,et al.  Establishment of the paternal methylation imprint of the human H19 and MEST/PEG1 genes during spermatogenesis. , 2000, Human molecular genetics.

[24]  A. Niveleau,et al.  Quantitation by image analysis of global DNA methylation in human spermatozoa and its prognostic value in in vitro fertilization: a preliminary study. , 2003, Fertility and sterility.

[25]  A. Niveleau,et al.  Influence of global sperm DNA methylation on IVF results. , 2005, Human reproduction.

[26]  S Apostolidou,et al.  Imprinting of IGF2 P0 transcript and novel alternatively spliced INS-IGF2 isoforms show differences between mouse and human. , 2006, Human molecular genetics.

[27]  E. Li,et al.  Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting , 2004, Nature.

[28]  C. Schmid,et al.  Sequence-specific packaging of DNA in human sperm chromatin. , 1987, Science.

[29]  T. Bestor,et al.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L , 2004, Nature.

[30]  T. Moore,et al.  Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2. , 1997, Proceedings of the National Academy of Sciences of the United States of America.