At Light Speed: Advances in Optogenetic Systems for Regulating Cell Signaling and Behavior.
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Ravi S Kane | David V Schaffer | D. Schaffer | R. Kane | N. Repina | Abhirup Mukherjee | Abhirup Mukherjee | Nicole A Repina | Alyssa Rosenbloom | Alyssa B. Rosenbloom
[1] Edward S Boyden,et al. Optogenetics and Translational Medicine , 2013, Science Translational Medicine.
[2] J. Nerbonne. Caged compounds: tools for illuminating neuronal responses and connections , 1996, Current Opinion in Neurobiology.
[3] Hongkui Zeng,et al. Mouse transgenic approaches in optogenetics. , 2012, Progress in brain research.
[4] Peter Hegemann,et al. Glu 87 of Channelrhodopsin‐1 Causes pH‐dependent Color Tuning and Fast Photocurrent Inactivation † , 2009, Photochemistry and photobiology.
[5] John A Rogers,et al. Fabrication and application of flexible, multimodal light-emitting devices for wireless optogenetics , 2013, Nature Protocols.
[6] Sharad Ramanathan,et al. Optical interrogation of neural circuits in Caenorhabditis elegans , 2009, Nature Methods.
[7] Anna W Roe,et al. Optogenetics through windows on the brain in the nonhuman primate. , 2013, Journal of neurophysiology.
[8] Gareth I Jenkins,et al. C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein , 2012, Proceedings of the National Academy of Sciences.
[9] A. Wojtovich,et al. Optogenetic control of ROS production , 2014, Redox biology.
[10] Feng Zhang,et al. Multimodal fast optical interrogation of neural circuitry , 2007, Nature.
[11] E. Huq,et al. A light-switchable gene promoter system , 2002, Nature Biotechnology.
[12] Orion D. Weiner,et al. Illuminating cell signalling with optogenetic tools , 2014, Nature Reviews Molecular Cell Biology.
[13] K. Gardner,et al. An optogenetic gene expression system with rapid activation and deactivation kinetics , 2013, Nature chemical biology.
[14] T. Todo,et al. Photoreaction cycle of the light, oxygen, and voltage domain in FKF1 determined by low-temperature absorption spectroscopy. , 2006, Biochemistry.
[15] K. Deisseroth,et al. Millisecond-timescale, genetically targeted optical control of neural activity , 2005, Nature Neuroscience.
[16] Jared E Toettcher,et al. Light control of plasma membrane recruitment using the Phy-PIF system. , 2011, Methods in enzymology.
[17] Josiah P. Zayner,et al. TULIPs: Tunable, light-controlled interacting protein tags for cell biology , 2012, Nature Methods.
[18] Alexander Deiters,et al. Optical Control of CRISPR/Cas9 Gene Editing. , 2015, Journal of the American Chemical Society.
[19] Valentina Emiliani,et al. Reshaping the optical dimension in optogenetics , 2012, Current Opinion in Neurobiology.
[20] Zhen Yan,et al. Structural basis of ultraviolet-B perception by UVR8 , 2012, Nature.
[21] Yoshio Maruyama,et al. Transcranial optogenetic stimulation for functional mapping of the motor cortex , 2009, Journal of Neuroscience Methods.
[22] P. Quail,et al. Phytochrome photosensory signalling networks , 2002, Nature Reviews Molecular Cell Biology.
[23] M. Heijde,et al. UV-B photoreceptor-mediated signalling in plants. , 2012, Trends in plant science.
[24] E. Isacoff,et al. Optical switches and triggers for the manipulation of ion channels and pores. , 2007, Molecular bioSystems.
[25] E. Isacoff,et al. Scanless two-photon excitation of channelrhodopsin-2 , 2010, Nature Methods.
[26] Yei Hwan Jung,et al. Injectable, Cellular-Scale Optoelectronics with Applications for Wireless Optogenetics , 2013, Science.
[27] Jens Timmer,et al. Multi-chromatic control of mammalian gene expression and signaling , 2013, Nucleic acids research.
[28] Samouil L. Farhi,et al. All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins , 2014, Nature Methods.
[29] David V. Schaffer,et al. Engineering adeno-associated viruses for clinical gene therapy , 2014, Nature Reviews Genetics.
[30] Moritoshi Sato,et al. Engineered pairs of distinct photoswitches for optogenetic control of cellular proteins , 2015, Nature Communications.
[31] Justin D. Vrana,et al. An optimized optogenetic clustering tool for probing protein interaction and function , 2014, Nature Communications.
[32] C. Gersbach,et al. A light-inducible CRISPR/Cas9 system for control of endogenous gene activation , 2015, Nature chemical biology.
[33] T. Murphy,et al. Automated light-based mapping of motor cortex by photoactivation of channelrhodopsin-2 transgenic mice , 2009, Nature Methods.
[34] K. L. Montgomery,et al. Wirelessly powered, fully internal optogenetics for brain, spinal and peripheral circuits in mice , 2015, Nature Methods.
[35] Jessica A. Cardin,et al. Noninvasive optical inhibition with a red-shifted microbial rhodopsin , 2014, Nature Neuroscience.
[36] Jennifer J. Loros,et al. Conformational Switching in the Fungal Light Sensor Vivid , 2007, Science.
[37] B. Zoltowski,et al. Time-resolved dimerization of a PAS-LOV protein measured with photocoupled small angle X-ray scattering. , 2008, Journal of the American Chemical Society.
[38] Xiaolan Yao,et al. Rationally improving LOV domain–based photoswitches , 2010, Nature Methods.
[39] Yuta Nihongaki,et al. Photoactivatable CRISPR-Cas9 for optogenetic genome editing , 2015, Nature Biotechnology.
[40] Yi I. Wu,et al. Spatiotemporal control of small GTPases with light using the LOV domain. , 2011, Methods in enzymology.
[41] M. Ehlers,et al. Rapid blue light induction of protein interactions in living cells , 2010, Nature Methods.
[42] Jared E. Toettcher,et al. Light-based feedback for controlling intracellular signaling dynamics , 2011, Nature Methods.
[43] Chao Tang,et al. A light-inducible organelle-targeting system for dynamically activating and inactivating signaling in budding yeast , 2013, Molecular biology of the cell.
[44] Susana Q. Lima,et al. Remote Control of Behavior through Genetically Targeted Photostimulation of Neurons , 2005, Cell.
[45] Amanda L. Loshbaugh,et al. Labelling and optical erasure of synaptic memory traces in the motor cortex , 2015, Nature.
[46] J. Clarke,et al. Reversible Optogenetic Control of Subcellular Protein Localization in a Live Vertebrate Embryo , 2016, Developmental cell.
[47] B. Zemelman,et al. Selective Photostimulation of Genetically ChARGed Neurons , 2002, Neuron.
[48] Azadeh Yazdan-Shahmorad,et al. A Large-Scale Interface for Optogenetic Stimulation and Recording in Nonhuman Primates , 2016, Neuron.
[49] S. Takeuchi,et al. Light generation of intracellular Ca2+ signals by a genetically encoded protein BACCS , 2015, Nature Communications.
[50] Shohei Koide,et al. Design of protein function leaps by directed domain interface evolution , 2008, Proceedings of the National Academy of Sciences.
[51] Randall J. Platt,et al. Optical Control of Mammalian Endogenous Transcription and Epigenetic States , 2013, Nature.
[52] Jacob G. Bernstein,et al. Optogenetic tools for analyzing the neural circuits of behavior , 2011, Trends in Cognitive Sciences.
[53] K. Gardner,et al. Identification of natural and artificial DNA substrates for light-activated LOV-HTH transcription factor EL222. , 2012, Biochemistry.
[54] Karl Deisseroth,et al. Structure-Guided Transformation of Channelrhodopsin into a Light-Activated Chloride Channel , 2014, Science.
[55] Moritoshi Sato,et al. CRISPR-Cas9-based photoactivatable transcription system. , 2015, Chemistry & biology.
[56] Raag D. Airan,et al. Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures , 2010, Nature Protocols.
[57] Matthew M. Crane,et al. Real-time multimodal optical control of neurons and muscles in freely-behaving Caenorhabditis elegans , 2011, Nature Methods.
[58] Ravi S Kane,et al. Optogenetic protein clustering and signaling activation in mammalian cells , 2013, Nature Methods.
[59] M. Häusser,et al. Targeting neurons and photons for optogenetics , 2013, Nature Neuroscience.
[60] Benjamin R. Arenkiel,et al. In Vivo Light-Induced Activation of Neural Circuitry in Transgenic Mice Expressing Channelrhodopsin-2 , 2007, Neuron.
[61] D. Schaffer,et al. Bidirectional regulation of mRNA translation in mammalian cells by using PUF domains. , 2014, Angewandte Chemie.
[62] Shinya Kuroda,et al. An optogenetic system for interrogating the temporal dynamics of Akt , 2015, Scientific Reports.
[63] J. Christie,et al. LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[64] Feng Zhang,et al. Channelrhodopsin-2 and optical control of excitable cells , 2006, Nature Methods.
[65] Jared E. Toettcher,et al. Using Optogenetics to Interrogate the Dynamic Control of Signal Transmission by the Ras/Erk Module , 2013, Cell.
[66] Matias D. Zurbriggen,et al. Orthogonal optogenetic triple-gene control in Mammalian cells. , 2014, ACS synthetic biology.
[67] B. Cui,et al. Light-Mediated Kinetic Control Reveals the Temporal Effect of the Raf/MEK/ERK Pathway in PC12 Cell Neurite Outgrowth , 2014, PloS one.
[68] B. Cui,et al. Optogenetic control of intracellular signaling pathways. , 2015, Trends in biotechnology.
[69] G. Buzsáki,et al. An implantable neural probe with monolithically integrated dielectric waveguide and recording electrodes for optogenetics applications , 2013, Journal of neural engineering.
[70] M. Kennedy,et al. A light-triggered protein secretion system , 2013, The Journal of cell biology.
[71] Tommaso Fellin,et al. Optical dissection of brain circuits with patterned illumination through the phase modulation of light , 2015, Journal of Neuroscience Methods.
[72] Brian Kuhlman,et al. Correlating in Vitro and in Vivo Activities of Light-Inducible Dimers: A Cellular Optogenetics Guide. , 2016, ACS synthetic biology.
[73] D. Schaffer,et al. Light-inducible activation of target mRNA translation in mammalian cells. , 2013, Chemical communications.
[74] Trevor E Swartz,et al. Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein , 2011, Proceedings of the National Academy of Sciences.
[75] J. Christie,et al. LOV to BLUF: flavoprotein contributions to the optogenetic toolkit. , 2012, Molecular plant.
[76] Karl Deisseroth,et al. Optetrode: a multichannel readout for optogenetic control in freely moving mice , 2011, Nature Neuroscience.
[77] Brian Kuhlman,et al. Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins , 2014, Proceedings of the National Academy of Sciences.
[78] Kevin H. Gardner,et al. Structural Basis of a Phototropin Light Switch , 2003, Science.
[79] Benjamin F. Grewe,et al. Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation , 2012, Nature Methods.
[80] J. Doudna,et al. The new frontier of genome engineering with CRISPR-Cas9 , 2014, Science.
[81] Sangkyun Lee,et al. Optogenetic oligomerization of Rab GTPases regulates intracellular membrane trafficking. , 2016, Nature chemical biology.
[82] G. Nagel,et al. From channelrhodopsins to optogenetics , 2013, EMBO molecular medicine.
[83] K. Deisseroth,et al. Neural substrates of awakening probed with optogenetic control of hypocretin neurons , 2007, Nature.
[84] Charles A. Gersbach,et al. Light-Inducible Spatiotemporal Control of Gene Activation by Customizable Zinc Finger Transcription Factors , 2012, Journal of the American Chemical Society.
[85] Inbar Brosh,et al. Holographic optogenetic stimulation of patterned neuronal activity for vision restoration , 2013, Nature Communications.
[86] Yi Yang,et al. Spatiotemporal control of gene expression by a light-switchable transgene system , 2012, Nature Methods.
[87] Edward J Oakeley,et al. Interaction of COP1 and UVR8 regulates UV‐B‐induced photomorphogenesis and stress acclimation in Arabidopsis , 2009, The EMBO journal.
[88] E. Bamberg,et al. Channelrhodopsin-2, a directly light-gated cation-selective membrane channel , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[89] E. Bamberg,et al. Light Activation of Channelrhodopsin-2 in Excitable Cells of Caenorhabditis elegans Triggers Rapid Behavioral Responses , 2005, Current Biology.
[90] I. Ozden,et al. Transparent intracortical microprobe array for simultaneous spatiotemporal optical stimulation and multichannel electrical recording , 2015, Nature Methods.
[91] P. De Camilli,et al. Optogenetic control of phosphoinositide metabolism , 2012, Proceedings of the National Academy of Sciences.
[92] Lief E. Fenno,et al. The Microbial Opsin Family of Optogenetic Tools , 2011, Cell.
[93] G. Ellis‐Davies,et al. Caged compounds: photorelease technology for control of cellular chemistry and physiology , 2007, Nature Methods.
[94] Talia N. Lerner,et al. Basomedial amygdala mediates top–down control of anxiety and fear , 2015, Nature.
[95] G. Glover,et al. Prefrontal cortical regulation of brainwide circuit dynamics and reward-related behavior , 2016, Science.
[96] Anna Huttenlocher,et al. Differential regulation of protrusion and polarity by PI3K during neutrophil motility in live zebrafish. , 2010, Developmental cell.
[97] F. Del Bene,et al. Optogenetics: A new enlightenment age for zebrafish neurobiology , 2012, Developmental neurobiology.
[98] B. Kuhlman,et al. A genetically-encoded photoactivatable Rac controls the motility of living cells , 2009, Nature.
[99] I. Soltesz,et al. On-demand optogenetic control of spontaneous seizures in temporal lobe epilepsy , 2013, Nature Communications.
[100] Christopher A. Voigt,et al. Spatiotemporal Control of Cell Signalling Using A Light-Switchable Protein Interaction , 2009, Nature.
[101] B. Zoltowski,et al. Optimized second generation CRY2/CIB dimerizers and photoactivatable Cre recombinase , 2016, Nature chemical biology.
[102] K. Gardner,et al. Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity. , 2004, Biochemistry.
[103] Justin D. Vrana,et al. Tools for Controlling Protein Interactions Using Light , 2014, Current protocols in cell biology.
[104] E. Mills,et al. A synthetic photoactivated protein to generate local or global Ca(2+) signals. , 2011, Chemistry & biology.
[105] John A Rogers,et al. Soft, stretchable, fully implantable miniaturized optoelectronic systems for wireless optogenetics , 2015, Nature Biotechnology.
[106] P. Quail,et al. Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light , 1999, Nature.
[107] Michael Häusser,et al. Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo , 2014, Nature Methods.
[108] Jie J. Zheng,et al. ReviewPDZ domains and their binding partners : structure , specificity , and modification , 2010 .
[109] Feng Zhang,et al. An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology , 2007, Journal of neural engineering.
[110] K. Svoboda,et al. Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice , 2008, Nature.
[111] P. Oeller,et al. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. , 1997, Science.
[112] Karl Deisseroth,et al. Optogenetics in Neural Systems , 2011, Neuron.
[113] J. Christie,et al. Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function. , 2002, The Plant journal : for cell and molecular biology.
[114] Edward S. Boyden,et al. A history of optogenetics: the development of tools for controlling brain circuits with light , 2011, F1000 biology reports.
[115] R. M. Hughes,et al. Light-mediated control of DNA transcription in yeast. , 2012, Methods.
[116] Markus K. Muellner,et al. Light-assisted small molecule screening against protein kinases , 2015, Nature chemical biology.
[117] B. Zoltowski,et al. Mechanism-based tuning of a LOV domain photoreceptor. , 2009, Nature chemical biology.
[118] K. Moffat,et al. Light-activated DNA binding in a designed allosteric protein , 2008, Proceedings of the National Academy of Sciences.
[119] Dmitri A. Nusinow,et al. FKF1 and GIGANTEA Complex Formation Is Required for Day-Length Measurement in Arabidopsis , 2007, Science.
[120] N. Gautam,et al. Subcellular optogenetic inhibition of G proteins generates signaling gradients and cell migration , 2014, Molecular biology of the cell.
[121] R. Dolmetsch,et al. Induction of protein-protein interactions in live cells using light , 2009, Nature Biotechnology.
[122] Karl Deisseroth,et al. Closed-Loop and Activity-Guided Optogenetic Control , 2015, Neuron.
[123] E. Bamberg,et al. Channelrhodopsin-1: A Light-Gated Proton Channel in Green Algae , 2002, Science.
[124] D. Kleinfeld,et al. ReaChR: A red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation , 2013, Nature Neuroscience.
[125] Cheol‐Hee Kim,et al. Optogenetic control of endogenous Ca2+ channels in vivo , 2015, Nature Biotechnology.
[126] E. Huq,et al. A Novel Molecular Recognition Motif Necessary for Targeting Photoactivated Phytochrome Signaling to Specific Basic Helix-Loop-Helix Transcription Factorsw⃞ , 2004, The Plant Cell Online.
[127] Michael Z. Lin,et al. Characterization of engineered channelrhodopsin variants with improved properties and kinetics. , 2009, Biophysical journal.
[128] Jeffrey J. Tabor,et al. Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery. , 2016, ACS nano.
[129] K. Deisseroth,et al. Molecular and Cellular Approaches for Diversifying and Extending Optogenetics , 2010, Cell.
[130] Hideaki E. Kato,et al. Crystal structure of the channelrhodopsin light-gated cation channel , 2012, Nature.
[131] D. Schaffer,et al. Regulation of endogenous transmembrane receptors through optogenetic Cry2 clustering , 2015, Nature Communications.
[132] K. Deisseroth,et al. Optogenetics in the behaving rat:integration of diverse new technologies in a vital animal model , 2013 .
[133] T. Halazonetis,et al. Ultraviolet-B-mediated induction of protein–protein interactions in mammalian cells , 2013, Nature Communications.
[134] Lief E. Fenno,et al. The development and application of optogenetics. , 2011, Annual review of neuroscience.
[135] Karl Deisseroth,et al. Functional Integration of Grafted Neural Stem Cell-Derived Dopaminergic Neurons Monitored by Optogenetics in an In Vitro Parkinson Model , 2011, PloS one.