Coherent diffraction microscopy for nano-imaging of cells

Recently, experiments of X-ray free electron lasers (XFEL) single-particle coherent diffraction imaging (CDI) have demonstrated the potential to reconstruct the three-dimensional (3D) structure of non-crystalline biological samples with high spatial resolution. For successful reconstructions, a complete 3D Fourier transform of the particle is to be assembled by a lot of diffraction patterns from identical particles. In practice, this is difficult because the orientations of the injected particles are random. Incomplete 3D Fourier transform composed of limited projection orientations may cause lower resolution of 3D reconstruction. To get superior 3D reconstructions, equally sloped tomography (EST) may be applied to the incomplete 3D Fourier transform data set of single-particle CDI. In this paper, some challenges and corresponding approaches to CDI are briefly discussed. In principle, CDI can yield wavelength-limited resolution without any of the limitations of physical lenses. At present, CDI is deceptively simple to implement. Successful application of CDI to experimental data, however, is not universal and requires considerable mathematical physics skills and interdisciplinary experiences. Whether or not lensless microscopy can outweigh the lens-based one will depend on the competition between the computational power and the precise manufacturing technique of lens in the future, especially in the field of real time imaging. As a type of quickly developing algorithmic microscopy, researchers still should improve the precision, robustness and convergence speed of CDI reconstruction algorithms.

[1]  T. Tuschl,et al.  Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS , 2015, Quarterly Reviews of Biophysics.

[2]  Zhifeng Huang,et al.  Radiation dose reduction in medical x-ray CT via Fourier-based iterative reconstruction. , 2013, Medical physics.

[3]  W. H. Benner,et al.  Femtosecond diffractive imaging with a soft-X-ray free-electron laser , 2006, physics/0610044.

[4]  Emmanuel J. Candès,et al.  PhaseLift: Exact and Stable Signal Recovery from Magnitude Measurements via Convex Programming , 2011, ArXiv.

[5]  J. Miao,et al.  Equally sloped tomography with oversampling reconstruction , 2005 .

[6]  J. Miao,et al.  Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography. , 2008, Journal of structural biology.

[7]  David L Donoho,et al.  Compressed sensing , 2006, IEEE Transactions on Information Theory.

[8]  K. Nugent Coherent methods in the X-ray sciences , 2009, 0908.3064.

[9]  J R Fienup,et al.  Reconstruction of an object from the modulus of its Fourier transform. , 1978, Optics letters.

[10]  E. Papillon,et al.  MAXIPIX, a fast readout photon-counting X-ray area detector for synchrotron applications , 2011 .

[11]  S. Marchesini,et al.  X-ray image reconstruction from a diffraction pattern alone , 2003, physics/0306174.

[12]  J. Miao,et al.  Frontier methods in coherent X-ray diffraction for high-resolution structure determination , 2016, Quarterly Reviews of Biophysics.

[13]  Daniel L Marks,et al.  Compressive holography. , 2009, Optics express.

[14]  Oliver Cossairt,et al.  High dynamic range coherent imaging using compressed sensing. , 2015, Optics express.

[15]  J. Miao,et al.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy , 2010, Proceedings of the National Academy of Sciences.

[16]  Jean-Michel Claverie,et al.  Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser. , 2015, Physical review letters.

[17]  J. Miao,et al.  High resolution 3D x-ray diffraction microscopy. , 2002, Physical review letters.

[18]  J. Miao,et al.  Oversampling smoothness: an effective algorithm for phase retrieval of noisy diffraction intensities. , 2012, Journal of applied crystallography.

[19]  J. Miao,et al.  Beyond crystallography: Diffractive imaging using coherent x-ray light sources , 2015, Science.

[20]  J. Miao,et al.  Quantitative image reconstruction of GaN quantum dots from oversampled diffraction intensities alone. , 2005, Physical review letters.

[21]  Takashi Kameshima,et al.  Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging , 2014, Nature Communications.

[22]  Yanqing Wu,et al.  Effects of missing low-frequency information on ptychographic and plane-wave coherent diffraction imaging. , 2013, Applied optics.

[23]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[24]  Keith A. Nugent,et al.  Coherent lensless X-ray imaging , 2010 .

[25]  Anton Barty,et al.  Imaging single cells in a beam of live cyanobacteria with an X-ray laser , 2015, Nature Communications.

[26]  Sparsity-based single-shot sub-wavelength coherent diffractive imaging , 2012 .

[27]  J. Miao,et al.  Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects , 1998 .