Recent advances in data-mining techniques for measuring transformation products by high-resolution mass spectrometry

Abstract Investigation on transformation products (TPs) of environmental contaminants is important for chemical exposure risk assessments. However, the task of identifying potential TPs in complex environmental matrices is very challenging. Advanced data-mining techniques have greatly accelerated the process of TP recognition and identification, which should be included as part of an integrated analytical workflow along with robust sample preparation and data acquisition protocols. In this review, the methods for enrichment of TPs from various sample matrix and the data acquisition modes by high-resolution mass spectrometry (HRMS) are summarized. Further, advanced data-mining techniques including suspect screening by in-silico prediction, case-control strategy, stable isotope labeling, mass defect filtering, and product ion filtering are critically reviewed. The gaps in the current knowledge and future trends for the identification of TPs are also discussed.

[1]  V. Yusà,et al.  Retrospective screening of pesticide metabolites in ambient air using liquid chromatography coupled to high-resolution mass spectrometry. , 2016, Talanta.

[2]  P. Liao,et al.  Exposure marker discovery of di(isononyl)cyclohexane-1,2-dicarboxylate using two mass spectrometry-based metabolite profiling data processing methods , 2018, Environmental Science and Pollution Research.

[3]  G. Jiang,et al.  Analytical methodology for identification of novel per- and polyfluoroalkyl substances in the environment , 2017 .

[4]  Zeqin Guo,et al.  Recent advances in non-targeted screening analysis using liquid chromatography - high resolution mass spectrometry to explore new biomarkers for human exposure. , 2020, Talanta.

[5]  E. Fukusaki,et al.  Highly Accurate Detection and Identification Methodology of Xenobiotic Metabolites Using Stable Isotope Labeling, Data Mining Techniques, and Time-Dependent Profiling Based on LC/HRMS/MS. , 2018, Analytical chemistry.

[6]  Martin Krauss,et al.  LC–high resolution MS in environmental analysis: from target screening to the identification of unknowns , 2010, Analytical and bioanalytical chemistry.

[7]  R. Kodešová,et al.  Transformation of atenolol, metoprolol, and carbamazepine in soils: The identification, quantification, and stability of the transformation products and further implications for the environment. , 2016, Environmental pollution.

[8]  D. Barceló,et al.  Degradation of the anticancer drug erlotinib during water chlorination: Non-targeted approach for the identification of transformation products. , 2015, Water research.

[9]  J. Gan,et al.  Stable Isotope Labeling-Assisted Metabolite Probing for Emerging Contaminants in Plants. , 2018, Analytical chemistry.

[10]  D. Barceló,et al.  Retrospective mass spectrometric analysis of wastewater-fed mesocosms to assess the degradation of drugs and their human metabolites. , 2020, Journal of hazardous materials.

[11]  E. J. Weber,et al.  A reaction library to predict direct photochemical transformation products of environmental organic contaminants in sunlit aquatic systems. , 2020, Environmental science & technology.

[12]  D. Barceló,et al.  Evaluation of the phototransformation of the antiviral zanamivir in surface waters through identification of transformation products. , 2014, Journal of hazardous materials.

[13]  Huaxi Zhou,et al.  Overview of the Phototransformation of Wastewater Effluent by High-Resolution Mass Spectrometry. , 2020, Environmental science & technology.

[14]  D. Barceló,et al.  Aerobic activated sludge transformation of vincristine and identification of the transformation products. , 2018, The Science of the total environment.

[15]  Emma L. Schymanski,et al.  Nontarget Screening with High Resolution Mass Spectrometry in the Environment: Ready to Go? , 2017, Environmental science & technology.

[16]  Christa S. McArdell,et al.  Non-target screening to trace ozonation transformation products in a wastewater treatment train including different post-treatments. , 2018, Water research.

[17]  Lin Zhao,et al.  UV/H2O2 and UV/PDS Treatment of Trimethoprim and Sulfamethoxazole in Synthetic Human Urine: Transformation Products and Toxicity. , 2016, Environmental science & technology.

[18]  L. Bijlsma,et al.  A Refined Nontarget Workflow for the Investigation of Metabolites through the Prioritization by in Silico Prediction Tools. , 2019, Analytical chemistry.

[19]  A. Fernández-Alba,et al.  Post-acquisition data processing for the screening of transformation products of different organic contaminants. Two-year monitoring of river water using LC-ESI-QTOF-MS and GCxGC-EI-TOF-MS , 2014, Environmental Science and Pollution Research.

[20]  J. A. Sánchez-Pérez,et al.  Determination of pesticide levels in wastewater from an agro-food industry: Target, suspect and transformation product analysis. , 2019, Chemosphere.

[21]  Beate I. Escher,et al.  Recent advances in environmental risk assessment of transformation products. , 2011, Environmental science & technology.

[22]  Yan He,et al.  Elucidating degradation mechanisms of florfenicol in soil by stable-isotope assisted nontarget screening. , 2021, Journal of hazardous materials.

[23]  Zongshan Zhao,et al.  Identification of transformation/degradation products of tetrabromobisphenol A and its derivatives , 2019, TrAC Trends in Analytical Chemistry.

[24]  Shuwen Yan,et al.  Photochemical Transformation of Nicotine in Wastewater Effluent. , 2017, Environmental science & technology.

[25]  Emma L. Schymanski,et al.  Prioritizing Unknown Transformation Products from Biologically-Treated Wastewater Using High-Resolution Mass Spectrometry, Multivariate Statistics, and Metabolic Logic. , 2015, Analytical chemistry.

[26]  Bárbara Socas-Rodríguez,et al.  Current trends in QuEChERS method. A versatile procedure for food, environmental and biological analysis , 2019, TrAC Trends in Analytical Chemistry.

[27]  J. Schnoor,et al.  Metabolism of SCCPs and MCCPs in Suspension Rice Cells Based on Paired Mass Distance (PMD) Analysis. , 2020, Environmental science & technology.

[28]  S. Kramer,et al.  Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data. , 2017, Environmental science. Processes & impacts.

[29]  Xiaowei Zhang,et al.  Suspect and non-target screening of pesticides and pharmaceuticals transformation products in wastewater using QTOF-MS. , 2020, Environment international.

[30]  V. Yusà,et al.  Retrospective analysis of pesticide metabolites in urine using liquid chromatography coupled to high-resolution mass spectrometry. , 2016, Talanta.

[31]  N. Vaziri,et al.  UPLC-based metabonomic applications for discovering biomarkers of diseases in clinical chemistry. , 2014, Clinical biochemistry.

[32]  Wen-Ling Chen,et al.  Systematic screening and identification of the chlorinated transformation products of aromatic pharmaceuticals and personal care products using high-resolution mass spectrometry. , 2018, The Science of the total environment.

[33]  G. Mascolo,et al.  Identification of transformation products of carbamazepine in lettuce crops irrigated with Ultraviolet-C treated water. , 2019, Environmental pollution.

[34]  Shenghong Hu,et al.  The identification of halogenated disinfection by-products in tap water using liquid chromatography-high resolution mass spectrometry. , 2020, The Science of the total environment.

[35]  Lubertus Bijlsma,et al.  Investigation of pharmaceuticals and illicit drugs in waters by liquid chromatography-high-resolution mass spectrometry , 2014 .

[36]  N. Thomaidis,et al.  Identification of biotransformation products of citalopram formed in activated sludge. , 2016, Water research.

[37]  Miao Yu,et al.  Tracing the Biotransformation of Polycyclic Aromatic Hydrocarbons in Contaminated Soil Using Stable Isotope-Assisted Metabolomics. , 2018, Environmental science & technology letters.

[38]  M. A. Lansarin,et al.  Identification of transformation products of rosuvastatin in water during ZnO photocatalytic degradation through the use of associated LC-QTOF-MS to computational chemistry. , 2015, Journal of hazardous materials.

[39]  L. Sleno,et al.  The use of mass defect in modern mass spectrometry. , 2012, Journal of mass spectrometry : JMS.

[40]  Qinghai Zhang,et al.  Investigation of etoxazole metabolites in citrus, soil and earthworms by ultra-performance liquid chromatography with time-of-flight mass spectrometry. , 2019, Chemosphere.

[41]  Emma L Schymanski,et al.  Systematic Exploration of Biotransformation Reactions of Amine-Containing Micropollutants in Activated Sludge. , 2016, Environmental science & technology.

[42]  Donglu Zhang,et al.  Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry. , 2009, Journal of mass spectrometry : JMS.

[43]  A. Covaci,et al.  Organophosphorus flame-retardant and plasticizer analysis, including recommendations from the first worldwide interlaboratory study , 2013 .

[44]  Yan-xin Wang,et al.  Selective Identification of Organic Iodine Compounds Using Liquid Chromatography-High Resolution Mass Spectrometry. , 2016, Analytical chemistry.

[45]  William J. Nash,et al.  From mass to metabolite in human untargeted metabolomics: Recent advances in annotation of metabolites applying liquid chromatography-mass spectrometry data , 2019, TrAC Trends in Analytical Chemistry.

[46]  Javier Hernández-Borges,et al.  Evolution and applications of the QuEChERS method , 2015 .

[47]  A. Schäffer,et al.  Ozonation of valsartan: Structural elucidation and environmental properties of transformation products. , 2019, Chemosphere.

[48]  D. Barceló,et al.  Transformation products of emerging contaminants in the environment and high-resolution mass spectrometry: a new horizon , 2015, Analytical and Bioanalytical Chemistry.

[49]  O. Schmitz,et al.  Photocatalytic transformation of acesulfame: Transformation products identification and embryotoxicity study. , 2016, Water research.

[50]  M. Ibáñez,et al.  UHPLC-QTOF MS screening of pharmaceuticals and their metabolites in treated wastewater samples from Athens. , 2017, Journal of hazardous materials.

[51]  D. Barceló,et al.  Transformation of tamoxifen and its major metabolites during water chlorination: Identification and in silico toxicity assessment of their disinfection byproducts. , 2015, Water research.

[52]  T. Schmidt,et al.  Suspect screening of micropollutants and their transformation products in advanced wastewater treatment. , 2017, The Science of the total environment.

[53]  Lynda B. M. Ellis,et al.  The University of Minnesota Pathway Prediction System: multi-level prediction and visualization , 2011, Nucleic Acids Res..

[54]  L. Mamy,et al.  Identification and characterization of tebuconazole transformation products in soil by combining suspect screening and molecular typology. , 2016, Environmental pollution.

[55]  Yuqi Feng,et al.  Derivatization for liquid chromatography-electrospray ionization-mass spectrometry analysis of small-molecular weight compounds , 2019, TrAC Trends in Analytical Chemistry.

[56]  J. Pawliszyn,et al.  Structure/reaction directed analysis for LC-MS based untargeted analysis. , 2019, Analytica chimica acta.

[57]  M. Radke,et al.  Screening for pharmaceutical transformation products formed in river sediment by combining ultrahigh performance liquid chromatography/high resolution mass spectrometry with a rapid data-processing method. , 2014, Analytica chimica acta.

[58]  M. G. Gómez Ramos,et al.  Development of sample extraction and clean-up strategies for target and non-target analysis of environmental contaminants in biological matrices. , 2015, Journal of chromatography. A.

[59]  G. Jiang,et al.  Recognition and Prioritization of Chemical Mixtures and Transformation Products in Chinese Estuarine Waters by Suspect Screening Analysis. , 2021, Environmental science & technology.

[60]  F. Borrull,et al.  Hydrophilic interaction liquid chromatography coupled to mass spectrometry-based detection to determine emerging organic contaminants in environmental samples , 2017 .

[61]  A. Z. Aris,et al.  Endocrine disrupting compounds (EDCs) in environmental matrices: Review of analytical strategies for pharmaceuticals, estrogenic hormones, and alkylphenol compounds , 2016 .

[62]  A. Joss,et al.  Trends in Micropollutant Biotransformation along a Solids Retention Time Gradient. , 2018, Environmental science & technology.

[63]  Annemarie P van Wezel,et al.  Tracing nitrogenous disinfection byproducts after medium pressure UV water treatment by stable isotope labeling and high resolution mass spectrometry. , 2015, Environmental science & technology.

[64]  N. Rousis,et al.  An integrated approach to MS-based identification and risk assessment of pharmaceutical biotransformation in wastewater. , 2021, The Science of the total environment.

[65]  Damià Barceló,et al.  Advances in liquid chromatography–high-resolution mass spectrometry for quantitative and qualitative environmental analysis , 2015, Analytical and Bioanalytical Chemistry.

[66]  Nikolaos S. Thomaidis,et al.  Targeted and non-targeted liquid chromatography-mass spectrometric workflows for identification of transformation products of emerging pollutants in the aquatic environment , 2015 .

[67]  G. Jiang,et al.  Identification of N-nitrosamines and nitrogenous heterocyclic byproducts during chloramination of aromatic secondary amine precursors. , 2020, Environmental science & technology.

[68]  P. Nomngongo,et al.  Current sample preparation methodologies for analysis of emerging pollutants in different environmental matrices , 2016 .

[69]  J. Schnoor,et al.  Multiple Metabolic Pathways of 2,4,6-Tribromophenol in Rice Plants. , 2019, Environmental science & technology.

[70]  Kathleen Rousseau,et al.  Data acquisition workflows in liquid chromatography coupled to high resolution mass spectrometry-based metabolomics: Where do we stand? , 2017, Journal of chromatography. A.

[71]  Ma Qian,et al.  Nontarget Mass Spectrometry Reveals New Perfluoroalkyl Substances in Fish from the Yangtze River and Tangxun Lake, China. , 2018, Environmental science & technology.

[72]  Jinghua Wang,et al.  Analysis of emerging per- and polyfluoroalkyl substances: Progress and current issues , 2020 .

[73]  Y. Hadar,et al.  Electrochemistry Combined with LC-HRMS: Elucidating Transformation Products of the Recalcitrant Pharmaceutical Compound Carbamazepine Generated by the White-Rot Fungus Pleurotus ostreatus. , 2015, Environmental science & technology.

[74]  Martin Scheringer,et al.  A framework for evaluating the contribution of transformation products to chemical persistence in the environment. , 2011, Environmental science & technology.

[75]  J. M. Patel,et al.  Prediction of Hydrolysis Products of Organic Chemicals under Environmental pH Conditions. , 2017, Environmental science & technology.

[76]  Leah Chibwe,et al.  Integrated Framework for Identifying Toxic Transformation Products in Complex Environmental Mixtures. , 2017, Environmental science & technology letters.