Biological, Chemical, and Omics Research of Taxus Medicinal Resources

Preclinical Research

[1]  Ling Yang,et al.  Bacterial diversity of Taxus rhizosphere: culture-independent and culture-dependent approaches. , 2008, FEMS microbiology letters.

[2]  Peigen Xiao,et al.  The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing , 2011, PloS one.

[3]  The Emperor's Four Treasuries: Scholars and the State in the Late Ch'ien-Lung Era , 1987, The China Quarterly.

[4]  G. Loake,et al.  Cultured cambial meristematic cells as a source of plant natural products , 2010, Nature Biotechnology.

[5]  R. Croteau,et al.  Genomic organization of plant terpene synthases and molecular evolutionary implications. , 2001, Genetics.

[6]  Damon P. Little,et al.  DNA Barcode Sequence Identification Incorporating Taxonomic Hierarchy and within Taxon Variability , 2011, PloS one.

[7]  D. Spooner,et al.  All biological disciplines that depend on DNA sequence data have been fundamentally changed in the last few years, driven by the development and emergence of next-generation sequenc- , 2012 .

[8]  Poonam,et al.  Constituents of the yew trees. , 1999, Phytochemistry.

[9]  Ziheng Yang,et al.  Positive Darwinian selection in the evolution of mammalian female reproductive proteins , 2001 .

[10]  S. Schuster.  Next-generation sequencing transforms today's biology , 2008, Nature Methods.

[11]  Yingjin Yuan,et al.  Lipidomic analysis reveals activation of phospholipid signaling in mechanotransduction of Taxus cuspidata cells in response to shear stress , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[12]  James B. Y. H. Behrendorff,et al.  Facile production of minor metabolites for drug development using a CYP3A shuffled library. , 2011, Metabolic engineering.

[13]  Hanxiang Gong,et al.  [Identification and antibacterial activity of secondary metabolites from Taxus endophytic fungus]. , 2009, Sheng wu gong cheng xue bao = Chinese journal of biotechnology.

[14]  Yi-Zeng Liang,et al.  Development of high-performance liquid chromatographic fingerprints for distinguishing Chinese Angelica from related umbelliferae herbs. , 2005, Journal of chromatography. A.

[15]  M. Möller,et al.  Delimitation of Taxus fuana Nan Li & R.R. Mill (Taxaceae) based on morphological and molecular data , 2008 .

[16]  P. Zhu,et al.  [Recent advances in the biosynthesis of Taxol]. , 2007, Yao xue xue bao = Acta pharmaceutica Sinica.

[17]  Bennett Daviss,et al.  Growing pains for metabolomics: the newest 'omic science is producing results--and more data than researchers know what to do with , 2005 .

[18]  T. A. Beek,et al.  Chemotaxonomy of Taxus , 1999 .

[19]  Yingjin Yuan,et al.  Metabolic profiling as a tool for understanding defense response of Taxus Cuspidata cells to shear stress , 2009, Biotechnology progress.

[20]  Neil Hall,et al.  Advanced sequencing technologies and their wider impact in microbiology , 2007, Journal of Experimental Biology.

[21]  Dana J Morrone,et al.  Increasing diterpene yield with a modular metabolic engineering system in E. coli: comparison of MEV and MEP isoprenoid precursor pathway engineering , 2009, Applied Microbiology and Biotechnology.

[22]  Zheng-Tao Wang,et al.  Taxane's Substituents at C3′ Affect Its Regioselective Metabolism: Different in Vitro Metabolism of Cephalomannine and Paclitaxel , 2008, Drug Metabolism and Disposition.

[23]  Nuclear DNA C-values Complete Familial Representation in Gymnosperms , 2001 .

[24]  J. X. Becerra.  Synchronous coadaptation in an ancient case of herbivory , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[25]  J. Geiger,et al.  Mechanistic, mutational, and structural evaluation of a Taxus phenylalanine aminomutase. , 2011, Biochemistry.

[26]  Ziheng Yang,et al.  Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[27]  P. Xiao,et al.  Application of High‐Throughput Sequencing in Medicinal Plant Transcriptome Studies , 2012 .

[28]  Patrick J Biggs,et al.  An approach to transcriptome analysis of non-model organisms using short-read sequences. , 2008, Genome informatics. International Conference on Genome Informatics.

[29]  郝大程,et al.  Phylogenetic relationship within the genus Taxus inferred from protein-coding genes and non-protein-coding DNA sequences , 2008 .

[30]  Yi-zeng Liang,et al.  Chromatographic fingerprint analysis--a rational approach for quality assessment of traditional Chinese herbal medicine. , 2006, Journal of chromatography. A.

[31]  Desmond O'Connor,et al.  Ultra-performance liquid chromatography coupled to time-of-flight mass spectrometry for robust, high-throughput quantitative analysis of an automated metabolic stability assay, with simultaneous determination of metabolic data. , 2006, Rapid communications in mass spectrometry : RCM.

[32]  Hiromasa Kiyota,et al.  Natural taxanes: developments since 1828. , 2011, Chemical reviews.

[33]  S. Kuduk,et al.  A common pharmacophore for cytotoxic natural products that stabilize microtubules. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Aiping Lu,et al.  Transcriptome analysis of Taxus cuspidata needles based on 454 pyrosequencing. , 2011, Planta medica.

[35]  P. Xiao,et al.  [Industrialization of medicinal plant tissue culture]. , 2003, Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica.

[36]  M. Wink.  Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective. , 2003, Phytochemistry.

[37]  Y. Yukimune,et al.  Methyl jasmonate-induced overproduction of paclitaxel and baccatin III in Taxus cell suspension cultures , 1996, Nature Biotechnology.

[38]  M. Navascués,et al.  Recent population decline and selection shape diversity of taxol‐related genes , 2012, Molecular ecology.

[39]  Aljos Farjon,et al.  A new classification and linear sequence of extant gymnosperms , 2011 .

[40]  M. O'Neil-Johnson,et al.  High-throughput method for the production and analysis of large natural product libraries for drug discovery. , 2002, Analytical chemistry.

[41]  M. Donoghue,et al.  Phylogeny and Biogeography of Taxus (Taxaceae) Inferred from Sequences of the Internal Transcribed Spacer Region of Nuclear Ribosomal DNA , 2001 .

[42]  P. Xiao,et al.  Interspecific relationships and origins of Taxaceae and Cephalotaxaceae revealed by partitioned Bayesian analyses of chloroplast and nuclear DNA sequences , 2008, Plant Systematics and Evolution.

[43]  T. V. van Beek,et al.  Screening of the needles of different yew species and cultivars for paclitaxel and related taxoids. , 2000, Phytochemistry.

[44]  S. O’Leary,et al.  Identification of two thaumatin-like proteins (TLPs) in the pollination drop of hybrid yew that may play a role in pathogen defence during pollen collection. , 2007, Tree physiology.

[45]  Keith E. J. Tyo,et al.  Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.

[46]  B. Daviss.  Growing pains for metabolomics , 2005 .

[47]  R. Spjut.  TAXONOMY AND NOMENCLATURE OF TAXUS (TAXACEAE) , 2007 .

[48]  M. Luo,et al.  Medicinal chemistry of paclitaxel and its analogues. , 2009, Current medicinal chemistry.

[49]  B. Neilan,et al.  Development of Taxol and other endophyte produced anti-cancer agents. , 2008, Recent patents on anti-cancer drug discovery.

[50]  P. Xiao,et al.  Molecular evolution and positive Darwinian selection of the chloroplast maturase matK , 2010, Journal of Plant Research.

[51]  Q. Shi,et al.  A New Metabolite with a New Substitution Pattern from the Seeds of the Chinese Yew, Taxus mairei , 2007, Chemistry & biodiversity.

[52]  A. Goossens,et al.  The relationship between TXS, DBAT, BAPT and DBTNBT gene expression and taxane production during the development of Taxus baccata plantlets. , 2011, Plant science : an international journal of experimental plant biology.

[53]  Yan-Yan Zhang,et al.  Quantitative structure-retention relationship studies for taxanes including epimers and isomeric metabolites in ultra fast liquid chromatography. , 2009, Journal of chromatography. A.

[54]  A. Stierle,et al.  Taxol and taxane production by Taxomyces andreanae, an endophytic fungus of Pacific yew. , 1993, Science.

[55]  N. Lewis,et al.  Cyclization of Geranylgeranyl Diphosphate to Taxa-4 (5), 11 (12) -diene Is the Committed Step of Taxol Biosynthesis in Pacific Yew (*) , 1995, The Journal of Biological Chemistry.

[56]  Molecular Evolution and Positive Darwinian Selection of the Gymnosperm Photosynthetic Rubisco Enzyme , 2010 .

[57]  M. Möller,et al.  DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species , 2011, Molecular ecology resources.

[58]  Zheng-Tao Wang,et al.  Profiling of yew hair roots from various species using ultra-performance liquid chromatography/electrospray ionization mass spectrometry. , 2008, Rapid communications in mass spectrometry : RCM.

[59]  Yan-Yan Zhang,et al.  Rapid qualitative and quantitative determination of seven valuable taxanes from various Taxus species by UFLC-ESI-MS and UFLC-DAD. , 2010, Planta medica.

[60]  C. Shilin,et al.  Authentication of medicinal plants by DNA-based markers and genomics. , 2010 .

[61]  R. F. Vieira,et al.  Chemical profiling of Ocimum americanum using external flavonoids. , 2003, Phytochemistry.

[62]  B. Zimmermann,et al.  Characterization of Pollen by Vibrational Spectroscopy , 2010, Applied spectroscopy.

[63]  W. Eisenreich,et al.  Studies on the biosynthesis of taxol: the taxane carbon skeleton is not of mevalonoid origin. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[64]  David W. Christianson,et al.  Taxadiene Synthase Structure and Evolution of Modular Architecture in Terpene Biosynthesis , 2010, Nature.

[65]  Zheng-Tao Wang,et al.  Stereochemical differentiation of C-7 hydroxyltaxane isomers by electrospray ionization mass spectrometry. , 2009, Rapid communications in mass spectrometry : RCM.

[66]  D. Janzen,et al.  Use of DNA barcodes to identify flowering plants. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[67]  R. Piredda,et al.  Taxus baccata in the Azores: a relict form at risk of imminent extinction , 2010, Biodiversity and Conservation.

[68]  D. Kingston,et al.  The taxane diterpenoids. , 1994, Fortschritte der Chemie organischer Naturstoffe = Progress in the chemistry of organic natural products. Progres dans la chimie des substances organiques naturelles.

[69]  V. Stella,et al.  Degradation of paclitaxel and related compounds in aqueous solutions I: epimerization. , 2008, Journal of pharmaceutical sciences.

[70]  S. A. Wilson,et al.  Recent advances towards development and commercialization of plant cell culture processes for the synthesis of biomolecules. , 2012, Plant biotechnology journal.

[71]  M. Möller,et al.  Species separation of Taxus baccata, T. canadensis, and T. cuspidata (Taxaceae) and origins of their reputed hybrids inferred from RAPD and cpDNA data. , 2003, American journal of botany.

[72]  A. McPhail,et al.  Plant antitumor agents. VI. The isolation and structure of taxol, a novel antileukemic and antitumor agent from Taxus brevifolia. , 1971, Journal of the American Chemical Society.

[73]  Robert M. Long,et al.  Taxol Biosynthesis and Molecular Genetics , 2006, Phytochemistry Reviews.

[74]  D. Hao,et al.  Evolution of the Chloroplast trnL-trnF Region in the Gymnosperm Lineages Taxaceae and Cephalotaxaceae , 2009, Biochemical Genetics.

[75]  P. Solich,et al.  Advantages of application of UPLC in pharmaceutical analysis. , 2006, Talanta.

[76]  Robert M. Williams,et al.  Taxus metabolomics: methyl jasmonate preferentially induces production of taxoids oxygenated at C-13 in Taxus x media cell cultures. , 2003, Phytochemistry.

[77]  A. Rehder.  Manual Of Cultivated Trees And Shrubs , 1940 .

[78]  P. Xiao,et al.  The first insight into the Taxus genome via fosmid library construction and end sequencing , 2011, Molecular Genetics and Genomics.

[79]  S. Kadota,et al.  Analysis of biosynthetic fluctuations of cultured Taxus seedlings using a metabolomic approach. , 2011, Phytochemistry.

[80]  D. Guénard,et al.  Taxol and Taxotere: Discovery, Chemistry, and Structure‐Activity Relationships , 1993 .

[81]  Zheng-Tao Wang,et al.  Chemotaxonomic study of medicinal Taxus species with fingerprint and multivariate analysis. , 2008, Planta medica.

[82]  Ling Yang,et al.  Phylogenetic relationships of the genus Taxus inferred from chloroplast intergenic spacer and nuclear coding DNA. , 2008, Biological & pharmaceutical bulletin.

[83]  Baohong Zhang,et al.  High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). , 2009, Gene.

[84]  Y. Konishi,et al.  Efficient purification of paclitaxel from yews using high-performance displacement chromatography technique. , 2011, Journal of chromatography. A.

[85]  T. Stimpfl,et al.  Application of direct PCR in a forensic case of yew poisoning , 2012, International Journal of Legal Medicine.

[86]  P. Xiao,et al.  Physicochemical evolution and positive selection of the gymnosperm matK proteins , 2010, Journal of Genetics.

[87]  Peigen Xiao,et al.  Sequence characteristics and divergent evolution of the chloroplastpsbA-trnH noncoding region in gymnosperms , 2011, Journal of Applied Genetics.

[88]  Digital Gene Expression by Tag Sequencing on the Illumina Genome Analyzer , 2010, Current protocols in human genetics.

[89]  M. Shuler,et al.  The kinetics of taxoid accumulation in cell suspension cultures of Taxus following elicitation with methyl jasmonate. , 1999, Biotechnology and bioengineering.

[90]  Ling Yang,et al.  Molecular evolution of paclitaxel biosynthetic genes TS and DBAT of Taxus species , 2009, Genetica.

[91]  R. Marsch,et al.  Molecular phylogeny and paclitaxel screening of fungal endophytes from Taxus globosa. , 2011, Fungal biology.

[92]  Yingjin Yuan,et al.  Proteomic analysis reveals the spatial heterogeneity of immobilized Taxus cuspidata cells in support matrices , 2006, Proteomics.