Identifying modulators of protein-protein interactions using photonic crystal biosensors.

Inhibitors and activators of protein-protein interactions are valuable as biological probes and medicinal agents but are often difficult to identify. Herein we describe a high-throughput assay, based upon photonic crystal (PC) biosensors, for the identification of modulators of protein-protein interactions. Through the use of a d-biotin-tris-NTA (BTN) hybrid compound, any His6-tagged protein can be immobilized on the surface of a PC biosensor. Binding of the bound protein to its cognate partner is detected via a shift in the peak wavelength value. We demonstrate this assay with three protein-protein pairs (caspase-9-XIAP, caspase-7-XIAP, FKBP12-FRB) and their small molecule modulators.

[1]  M Angela Taipa Immunoassays: biological tools for high throughput screening and characterisation of combinatorial libraries. , 2008, Combinatorial chemistry & high throughput screening.

[2]  Lance G. Laing,et al.  Microplate-based, label-free detection of biomolecular interactions: applications in proteomics , 2006, Expert review of proteomics.

[3]  David C Fry,et al.  Protein-protein interactions as targets for small molecule drug discovery. , 2006, Biopolymers.

[4]  Sara Linse,et al.  Methods for the detection and analysis of protein–protein interactions , 2007, Proteomics.

[5]  Jacob Piehler,et al.  Specific and stable fluorescence labeling of histidine-tagged proteins for dissecting multi-protein complex formation. , 2006, Journal of the American Chemical Society.

[6]  Lance G. Laing,et al.  Label-Free Assays on the BIND System , 2004, Journal of biomolecular screening.

[7]  Emad S. Alnemri,et al.  A conserved XIAP-interaction motif in caspase-9 and Smac/DIABLO regulates caspase activity and apoptosis , 2001, Nature.

[8]  Paul J Hergenrother,et al.  A general method for discovering inhibitors of protein-DNA interactions using photonic crystal biosensors. , 2008, ACS chemical biology.

[9]  Sheng Jiang,et al.  Design, synthesis, and characterization of a potent, nonpeptide, cell-permeable, bivalent Smac mimetic that concurrently targets both the BIR2 and BIR3 domains in XIAP. , 2007, Journal of the American Chemical Society.

[10]  Alexander Dömling,et al.  Small molecular weight protein-protein interaction antagonists: an insurmountable challenge? , 2008, Current opinion in chemical biology.

[11]  Timothy Londergan,et al.  Looking towards label-free biomolecular interaction analysis in a high-throughput format: a review of new surface plasmon resonance technologies. , 2006, Current opinion in biotechnology.

[12]  Stuart L. Schreiber,et al.  Structure of the FKBP12-Rapamycin Complex Interacting with Binding Domain of Human FRAP , 1996, Science.

[13]  Steven Fletcher,et al.  Protein-protein interaction inhibitors: small molecules from screening techniques. , 2007, Current topics in medicinal chemistry.

[14]  S. Lata,et al.  High-affinity adaptors for switchable recognition of histidine-tagged proteins. , 2005, Journal of the American Chemical Society.

[15]  E. Pérez-Payá,et al.  Discovery of inhibitors of protein-protein interactions from combinatorial libraries. , 2007, Current topics in medicinal chemistry.

[16]  Young Chul Park,et al.  Structural Basis of Caspase Inhibition by XIAP Differential Roles of the Linker versus the BIR Domain , 2001, Cell.

[17]  Christian Eggeling,et al.  Highly sensitive fluorescence detection technology currently available for HTS. , 2003, Drug discovery today.