Identification of Lung-Cancer-Related Genes with the Shortest Path Approach in a Protein-Protein Interaction Network
暂无分享,去创建一个
Lei Chen | Tao Huang | Yu-Dong Cai | Ning Zhang | Bi-Qing Li | Xiang-Yin Kong | Jian Zhang | Yu-Dong Cai | Jian Zhang | Xiangyin Kong | Tao Huang | Lei Chen | Ning Zhang | Hai-Peng Li | Bi-Qing Li | Jin You | Jin You | Hai-Peng Li
[1] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[2] S. Lindquist,et al. HSP90 and the chaperoning of cancer , 2005, Nature Reviews Cancer.
[3] Minoru Kanehisa,et al. The KEGG database. , 2002, Novartis Foundation symposium.
[4] A. Cheung,et al. Raf/MEK/MAPK signaling stimulates the nuclear translocation and transactivating activity of FOXM1c , 2005, Journal of Cell Science.
[5] Mona Singh,et al. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps , 2005, ISMB.
[6] Shunpu Zhang,et al. A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance , 2007, BMC Bioinformatics.
[7] Hao Li,et al. Plk1-dependent phosphorylation of FoxM1 regulates a transcriptional programme required for mitotic progression , 2008, Nature Cell Biology.
[8] A. Gregor,et al. Small cell lung cancer. , 1997, Lung cancer.
[9] Damian Szklarczyk,et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored , 2010, Nucleic Acids Res..
[10] Luonan Chen,et al. Network‐Based Prediction of Protein Function , 2009 .
[11] J. Zhao,et al. α4 is highly expressed in carcinogen-transformed human cells and primary human cancers , 2011, Oncogene.
[12] H. Land,et al. Anticancer activity of the cholesterol exporter ABCA1 gene. , 2012, Cell reports.
[13] M. Noguchi,et al. Binding of lactoferrin to IGBP1 triggers apoptosis in a lung adenocarcinoma cell line. , 2011, Anticancer research.
[14] R. Rintoul,et al. ECM overrides DNA damage-induced cell cycle arrest and apoptosis in small-cell lung cancer cells through β1 integrin-dependent activation of PI3-kinase , 2006, Cell Death and Differentiation.
[15] Gábor Csárdi,et al. The igraph software package for complex network research , 2006 .
[16] D. Klionsky,et al. Tap42-associated protein phosphatase type 2A negatively regulates induction of autophagy , 2009, Autophagy.
[17] G. Borisy,et al. Cell Migration: Integrating Signals from Front to Back , 2003, Science.
[18] Ambuj K. Singh,et al. Molecular Function Prediction Using Neighborhood Features , 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[19] G. Giaccone,et al. Targeting the dynamic HSP90 complex in cancer , 2010, Nature Reviews Cancer.
[20] N. Cho,et al. Targeting ILK and β4 integrin abrogates the invasive potential of ovarian cancer. , 2012, Biochemical and biophysical research communications.
[21] M. Tretiakova,et al. The Forkhead Box m1 transcription factor stimulates the proliferation of tumor cells during development of lung cancer. , 2006, Cancer research.
[22] Barry Komm,et al. Profiling of estrogen up- and down-regulated gene expression in human breast cancer cells: insights into gene networks and pathways underlying estrogenic control of proliferation and cell phenotype. , 2003, Endocrinology.
[23] W. Sommergruber,et al. Expression of G Protein-Coupled Receptor 19 in Human Lung Cancer Cells Is Triggered by Entry into S-Phase and Supports G2–M Cell-Cycle Progression , 2012, Molecular Cancer Research.
[24] Yiannis Kourmpetis,et al. Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data , 2010, PloS one.
[25] V. Janssens,et al. Protein phosphatase 2A: a highly regulated family of serine/threonine phosphatases implicated in cell growth and signalling. , 2001, The Biochemical journal.
[26] K. Kinzler,et al. Ferredoxin reductase affects p53-dependent, 5-fluorouracil–induced apoptosis in colorectal cancer cells , 2001, Nature Medicine.
[27] Josef Stoer,et al. Numerische Mathematik 1 , 1989 .
[28] Y. Sakao,et al. Hsp90 inhibitors cause G2/M arrest associated with the reduction of Cdc25C and Cdc2 in lung cancer cell lines , 2006, Journal of Cancer Research and Clinical Oncology.
[29] Ka-Lok Ng,et al. Prediction of protein functions based on function-function correlation relations , 2010, Comput. Biol. Medicine.
[30] R. Costa,et al. Chk2 Mediates Stabilization of the FoxM1 Transcription Factor To Stimulate Expression of DNA Repair Genes , 2006, Molecular and Cellular Biology.
[31] K. Chou,et al. Identification of Colorectal Cancer Related Genes with mRMR and Shortest Path in Protein-Protein Interaction Network , 2012, PloS one.
[32] K. Kinzler,et al. Ferredoxin reductase affects p53-dependent, 5-fluorouracil–induced apoptosis in colorectal cancer cells , 2001, Nature Medicine.
[33] D. Yee,et al. Targeting insulin-like growth factor pathways , 2006, British Journal of Cancer.
[34] Stanley Letovsky,et al. Predicting protein function from protein/protein interaction data: a probabilistic approach , 2003, ISMB.
[35] M. Teh,et al. FOXM1 is a downstream target of Gli1 in basal cell carcinomas. , 2002, Cancer research.
[36] R. Sharan,et al. Network-based prediction of protein function , 2007, Molecular systems biology.
[37] Edsger W. Dijkstra,et al. A note on two problems in connexion with graphs , 1959, Numerische Mathematik.
[38] M. Follettie,et al. Loss of the forkhead transcription factor FoxM1 causes centrosome amplification and mitotic catastrophe. , 2005, Cancer research.
[39] Christopher Haslett,et al. Extracellular matrix proteins protect small cell lung cancer cells against apoptosis: A mechanism for small cell lung cancer growth and drug resistance in vivo , 1999, Nature Medicine.
[40] Jun Wu,et al. B cell receptor-associated protein α4 displays rapamycin-sensitive binding directly to the catalytic subunit of protein phosphatase 2A , 1997 .
[41] C. Pilarsky,et al. Identification and validation of commonly overexpressed genes in solid tumors by comparison of microarray data. , 2004, Neoplasia.
[42] Lei Zhang,et al. Identification of retinoblastoma related genes with shortest path in a protein-protein interaction network. , 2012, Biochimie.
[43] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[44] Yusuke Nakamura,et al. Genome‐wide analysis of gene expression in human intrahepatic cholangiocarcinoma , 2005, Hepatology.
[45] W. Hahn,et al. Involvement of PP2A in viral and cellular transformation , 2005, Oncogene.
[46] Y. Chang,et al. Clinical significance of insulin receptor substrate-I down-regulation in non-small cell lung cancer. , 2006, Oncology reports.
[47] Philippe Dessen,et al. Atlas of Genetics and Cytogenetics in Oncology and Haematology, year 2003 , 2003, Nucleic Acids Res..
[48] R. Costa,et al. Increased levels of the FoxM1 transcription factor accelerate development and progression of prostate carcinomas in both TRAMP and LADY transgenic mice. , 2006, Cancer research.
[49] N. Dubrawsky. Cancer statistics , 1989, CA: a cancer journal for clinicians.
[50] C. Thompson,et al. Alpha4 is an essential regulator of PP2A phosphatase activity. , 2009, Molecular cell.
[51] J. Sasaki,et al. Quantitation by 1H‐NMR of dolichol, cholesterol and choline‐containing lipids in extracts of normal and phathological thyroid tissue , 2000, NMR in biomedicine.
[52] Xinbin Chen,et al. The ferredoxin reductase gene is regulated by the p53 family and sensitizes cells to oxidative stress-induced apoptosis , 2002, Oncogene.
[53] Antonio Reverter,et al. A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer , 2011, BMC Systems Biology.
[54] A. M. Houghton,et al. Neutrophil Elastase-Mediated Degradation of IRS-1 Accelerates Lung Tumor Growth , 2010, Nature Medicine.
[55] C. R. Ramachandran,et al. Biochemical changes in tumor tissues of oral cancer patients. , 2003, Clinical biochemistry.
[56] M. Noguchi,et al. Overexpression of immunoglobulin (CD79a) binding protein1 (IGBP‐1) in small lung adenocarcinomas and its clinicopathological significance , 2011, Pathology international.
[57] A. Jemal,et al. Cancer statistics, 2012 , 2012, CA: a cancer journal for clinicians.
[58] Ya‐Wen Cheng,et al. Gender difference in estrogen receptor alpha promoter hypermethylation and its prognostic value in non‐small cell lung cancer , 2005, International journal of cancer.
[59] Sandhya Rani,et al. Human Protein Reference Database—2009 update , 2008, Nucleic Acids Res..
[60] M. Teh,et al. FOXM 1 Is a Downstream Target of Gli 1 in Basal Cell Carcinomas 1 , 2002 .
[61] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[62] Y. Benjamini,et al. THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY , 2001 .
[63] Jan P van Meerbeeck,et al. Small-cell lung cancer , 1980, The Lancet.
[64] S. Kasif,et al. Whole-genome annotation by using evidence integration in functional-linkage networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[65] R. Costa,et al. New and unexpected: forkhead meets ARF. , 2005, Current opinion in genetics & development.