论文信息 - EST-PAGE - managing and analyzing EST data

EST-PAGE - managing and analyzing EST data

UNLABELLED EST-PAGE provides a bioinformatics solution for expressed sequence tags (EST) data entry, database management, GenBank submission, process control and data retrieval from a unified web interface that can be easily customized and adapted by groups working on diverse EST sequencing projects. AVAILABILITY The system and source code are available upon request from the authors. SUPPLEMENTARY INFORMATION http://EST-PAGE.binf.gmu.edu

[1] Jennifer Daub,et al. Expressed sequence tags: medium-throughput protocols. , 2004, Methods in molecular biology.

[2] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[3] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.

[4] John W. Keele,et al. Positional candidate gene selection from livestock EST databases using Gene Ontology , 2003, Bioinform..

[5] John Quackenbush,et al. The TIGR Gene Indices: reconstruction and representation of expressed gene sequences , 2000, Nucleic Acids Res..

[6] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[7] A. Kerlavage,et al. Complementary DNA sequencing: expressed sequence tags and human genome project , 1991, Science.

[8] E. Mardis,et al. Generation and analysis of 280,000 human expressed sequence tags. , 1996, Genome research.

[9] G. Schuler. Pieces of the puzzle: expressed sequence tags and the catalog of human genes , 1997, Journal of Molecular Medicine.

[10] M. Boguski,et al. dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.

[11] F F Costa,et al. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. , 2000, Proceedings of the National Academy of Sciences of the United States of America.