Toward a more complete view of tRNA biology
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[1] Zaida Luthey-Schulten,et al. Dynamics of Recognition between tRNA and elongation factor Tu. , 2008, Journal of molecular biology.
[2] R. L. Gonzalez,et al. Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. , 2008, Molecular cell.
[3] N. Seeman,et al. Sequence-specific Recognition of Double Helical Nucleic Acids by Proteins (base Pairs/hydrogen Bonding/recognition Fidelity/ion Binding) , 2022 .
[4] R. Giegé,et al. A minimalist glutamyl-tRNA synthetase dedicated to aminoacylation of the tRNAAsp QUC anticodon. , 2004, Nucleic acids research.
[5] Paul Schimmel,et al. A simple structural feature is a major determinant of the identity of a transfer RNA , 1988, Nature.
[6] C. Florentz,et al. Novel features in the tRNA-like world of plant viral RNAs , 2001, Cellular and Molecular Life Sciences CMLS.
[7] G. Caetano-Anollés,et al. The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure , 2007, Journal of Molecular Evolution.
[8] Eva Freyhult,et al. Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos , 2006, Nucleic acids research.
[9] G. Eriani,et al. Yeast aspartyl-tRNA synthetase residues interacting with tRNA(Asp) identity bases connectively contribute to tRNA(Asp) binding in the ground and transition-state complex and discriminate against non-cognate tRNAs. , 1999, Journal of molecular biology.
[10] O. Nureki,et al. Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme , 2003, Cell.
[11] W. McClain,et al. Rules that govern tRNA identity in protein synthesis. , 1993, Journal of molecular biology.
[12] Jean-Marie Lehn,et al. Supramolecular chemistry: from molecular information towards self-organization and complex matter , 2004 .
[13] G. Varani,et al. Correlation of deformability at a tRNA recognition site and aminoacylation specificity. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[14] K. Jacobson. Reaction of aminoacyl-tRNA synthetases with heterologous tRNA's. , 1971, Progress in nucleic acid research and molecular biology.
[15] A. Yakhnin. A Model for the Origin of Protein Synthesis as Coreplicational Scanning of Nascent RNA , 2007, Origins of Life and Evolution of Biospheres.
[16] M. Deutscher,et al. A channeled tRNA cycle during mammalian protein synthesis. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[17] J. Puglisi,et al. Additive, cooperative and anti‐cooperative effects between identity nucleotides of a tRNA. , 1993, The EMBO journal.
[18] J. Karle,et al. The transition state for formation of the peptide bond in the ribosome , 2006, Proceedings of the National Academy of Sciences.
[19] P. Schimmel,et al. Functional compensation of a recognition-defective transfer RNA by a distal base pair substitution. , 1992, Biochemistry.
[20] R. Green,et al. An Active Role for tRNA in Decoding Beyond Codon:Anticodon Pairing , 2005, Science.
[21] A. Hopper,et al. tRNA transfers to the limelight. , 2003, Genes & development.
[22] C. Florentz,et al. Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase , 1991, Science.
[23] M. Safro,et al. Electrostatic potential of aminoacyl-tRNA synthetase navigates tRNA on its pathway to the binding site. , 2005, Journal of molecular biology.
[24] S Rodin,et al. The presence of codon-anticodon pairs in the acceptor stem of tRNAs. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[25] An intricate RNA structure with two tRNA-derived motifs directs complex formation between yeast aspartyl-tRNA synthetase and its mRNA. , 2005, Journal of molecular biology.
[26] Dieter Söll,et al. From one amino acid to another: tRNA-dependent amino acid biosynthesis , 2008, Nucleic acids research.
[27] B. Lorber,et al. Crystal structure of human mitochondrial tyrosyl-tRNA synthetase reveals common and idiosyncratic features. , 2007, Structure.
[28] Shigeyuki Yokoyama,et al. Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA , 2007, Proceedings of the National Academy of Sciences.
[29] R. Giegé,et al. Yeast tRNAAsp Charging Accuracy Is Threatened by the N-terminal Extension of Aspartyl-tRNA Synthetase* , 2003, The Journal of Biological Chemistry.
[30] Frank Schluenzen,et al. High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.
[31] O. Nureki,et al. Complete crystallographic analysis of the dynamics of CCA sequence addition , 2006, Nature.
[32] R. Sauer,et al. The tmRNA system for translational surveillance and ribosome rescue. , 2007, Annual review of biochemistry.
[33] R Giegé,et al. Universal rules and idiosyncratic features in tRNA identity. , 1998, Nucleic acids research.
[34] A. Weiner,et al. Phylogeny from function: evidence from the molecular fossil record that tRNA originated in replication, not translation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[35] R Giegé,et al. A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. , 1999, Biochemistry.
[36] D. Hirsh. Tryptophan transfer RNA as the UGA suppressor. , 1971, Journal of molecular biology.
[37] S Cusack. Aminoacyl-tRNA synthetases. , 1997, Current opinion in structural biology.
[38] R. Giegé,et al. Evolution of the tRNA(Tyr)/TyrRS aminoacylation systems. , 2005, Biochimie.
[39] D. Söll,et al. A truncated aminoacyl-tRNA synthetase modifies RNA. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[40] R. Giegé,et al. Identity of tRNA for yeast tyrosyl-tRNA synthetase: tyrosylation is more sensitive to identity nucleotides than to structural features. , 2000, Biochemistry.
[41] C. Florentz,et al. Human mitochondrial tRNAs in health and disease , 2003, Cellular and Molecular Life Sciences CMLS.
[42] K. Musier-Forsyth,et al. Species-specific differences in the operational RNA code for aminoacylation of tRNAPro. , 1998, Biochemistry.
[43] R Giegé,et al. An operational RNA code for amino acids and possible relationship to genetic code. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[44] P. Schimmel,et al. Atomic Determinants for Aminoacylation of RNA Minihelices and Relationship to Genetic Code , 1999 .
[45] M. Selmer,et al. Structure of the 70S Ribosome Complexed with mRNA and tRNA , 2006, Science.
[46] P. Romby,et al. Bacterial translational control at atomic resolution. , 2003, Trends in genetics : TIG.
[47] K. Randerath,et al. tRNA alterations in cancer. , 1983, Recent results in cancer research. Fortschritte der Krebsforschung. Progres dans les recherches sur le cancer.
[48] H. Himeno,et al. Escherichia coli tRNA(Asp) recognition mechanism differing from that of the yeast system. , 1992, Biochemical and biophysical research communications.
[49] R Giegé,et al. Search for characteristic structural features of mammalian mitochondrial tRNAs. , 2000, RNA.
[50] Jacquelyn S Fetrow,et al. Using molecular dynamics to map interaction networks in an aminoacyl‐tRNA synthetase , 2007, Proteins.
[51] S. Yokoyama,et al. The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer–editing conformation , 2005, Nature Structural &Molecular Biology.
[52] Susumu,et al. Changes of post-transcriptional modification of wye base in tumor-specific tRNAPhe. , 1982, Nucleic acids research.
[53] Hubert Dominique Becker,et al. The transamidosome: a dynamic ribonucleoprotein particle dedicated to prokaryotic tRNA-dependent asparagine biosynthesis. , 2007, Molecular cell.
[54] Harry F. Noller,et al. Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements , 2014, Cell.
[55] A. Feig,et al. The RNA binding protein Hfq interacts specifically with tRNAs. , 2008, RNA.
[56] W. McClain,et al. Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end. , 1988, Science.
[57] S. Yokoyama,et al. The crystal structure of leucyl-tRNA synthetase complexed with tRNA Leu in the post-transfer-editing , 2005 .
[58] D. Söll,et al. Glutamyl-transfer RNA: a precursor of heme and chlorophyll biosynthesis. , 1992, Trends in biochemical sciences.
[59] L. Delage,et al. The voltage-dependent anion channel, a major component of the tRNA import machinery in plant mitochondria , 2006, Proceedings of the National Academy of Sciences.
[60] M. Brännvall,et al. The exocyclic amine at the RNase P cleavage site contributes to substrate binding and catalysis. , 2006, Journal of molecular biology.
[61] J. A. Wahleithner,et al. Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[62] O. Uhlenbeck,et al. Nucleotides in yeast tRNAPhe required for the specific recognition by its cognate synthetase. , 1989, Science.
[63] R. Green,et al. Specificity for aminoacylation of an RNA helix: an unpaired, exocyclic amino group in the minor groove. , 1991, Science.
[64] E. Szathmáry,et al. In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership , 2007, Nucleic acids research.
[65] Alain Van Dorsselaer,et al. Proteomic Consequences of a Human Mitochondrial tRNA Mutation beyond the Frame of Mitochondrial Translation* , 2003, Journal of Biological Chemistry.
[66] G. Eriani,et al. The structure of an AspRS—tRNAAsp complex reveals a tRNA‐dependent control mechanism , 2001, The EMBO journal.
[67] Marty C. Brandon,et al. Mitochondrial mutations in cancer , 2006, Oncogene.
[68] B. Felden,et al. Sequences Outside Recognition Sets Are Not Neutral for tRNA Aminoacylation , 1998, The Journal of Biological Chemistry.
[69] Paul F Agris,et al. tRNA's wobble decoding of the genome: 40 years of modification. , 2007, Journal of molecular biology.
[70] C. Florentz,et al. Efficient aminoacylation of resected RNA helices by class II aspartyl‐tRNA synthetase dependent on a single nucleotide. , 1994, The EMBO journal.
[71] R. Roberts,et al. Novel Species of tRNA , 1971, Nature.
[72] Marcin Feder,et al. MODOMICS: a database of RNA modification pathways , 2005, Nucleic Acids Res..
[73] Joachim Frank,et al. The process of mRNA–tRNA translocation , 2007, Proceedings of the National Academy of Sciences.