Redundant phenazine operons in Pseudomonas aeruginosa exhibit environment-dependent expression and differential roles in pathogenicity

Evolutionary biologists have postulated that several fitness advantages may be conferred by the maintenance of duplicate genes, including environmental adaptation resulting from differential regulation. We examined the expression and physiological contributions of two redundant operons in the adaptable bacterium Pseudomonas aeruginosa PA14. These operons, phzA1-G1 (phz1) and phzA2-G2 (phz2), encode nearly identical sets of proteins that catalyze the synthesis of phenazine-1-carboxylic acid, the precursor for several phenazine derivatives. Phenazines perform diverse roles in P. aeruginosa physiology and act as virulence factors during opportunistic infections of plant and animal hosts. Although reports have indicated that phz1 is regulated by the Pseudomonas quinolone signal, factors controlling phz2 expression have not been identified, and the relative contributions of these redundant operons to phenazine biosynthesis have not been evaluated. We found that in liquid cultures, phz1 was expressed at higher levels than phz2, although phz2 showed a greater contribution to phenazine production. In colony biofilms, phz2 was expressed at high levels, whereas phz1 expression was not detectable, and phz2 was responsible for virtually all phenazine production. Analysis of mutants defective in quinolone signal synthesis revealed a critical role for 4-hydroxy-2-heptylquinoline in phz2 induction. Finally, deletion of phz2, but not of phz1, decreased lung colonization in a murine model of infection. These results suggest that differential regulation of the redundant phz operons allows P. aeruginosa to adapt to diverse environments.

[1]  D. Spring,et al.  2-Heptyl-4-Quinolone, a Precursor of the Pseudomonas Quinolone Signal Molecule, Modulates Swarming Motility in Pseudomonas aeruginosa , 2011, Journal of bacteriology.

[2]  D. Newman,et al.  Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition , 2011, Journal of bacteriology.

[3]  Z. Lu,et al.  Regulatory Feedback Loop of Two phz Gene Clusters through 5′-Untranslated Regions in Pseudomonas sp. M18 , 2011, PloS one.

[4]  M. Whiteley,et al.  Oxygen levels rapidly modulate Pseudomonas aeruginosa social behaviours via substrate limitation of PqsH , 2010, Molecular microbiology.

[5]  Dianne K. Newman,et al.  Phenazines affect biofilm formation by Pseudomonas aeruginosa in similar ways at various scales. , 2010, Research in microbiology.

[6]  W. Blankenfeldt,et al.  Diversity and Evolution of the Phenazine Biosynthesis Pathway , 2009, Applied and Environmental Microbiology.

[7]  D. Hassett,et al.  Pseudomonas aeruginosa exotoxin pyocyanin causes cystic fibrosis airway pathogenesis. , 2009, The American journal of pathology.

[8]  Xuehong Zhang,et al.  Temperature-Dependent Expression of phzM and Its Regulatory Genes lasI and ptsP in Rhizosphere Isolate Pseudomonas sp. Strain M18 , 2009, Applied and Environmental Microbiology.

[9]  Ran Kafri,et al.  Genetic Redundancy: New Tricks for Old Genes , 2009, Cell.

[10]  L. Rahme,et al.  Modeling Pseudomonas aeruginosa pathogenesis in plant hosts , 2009, Nature Protocols.

[11]  T. Leto,et al.  The Pseudomonas Toxin Pyocyanin Inhibits the Dual Oxidase-Based Antimicrobial System as It Imposes Oxidative Stress on Airway Epithelial Cells1 , 2008, The Journal of Immunology.

[12]  E. Pesci,et al.  PqsE Functions Independently of PqsR-Pseudomonas Quinolone Signal and Enhances the rhl Quorum-Sensing System , 2008, Journal of bacteriology.

[13]  Tracy K. Teal,et al.  Redox-Active Antibiotics Control Gene Expression and Community Behavior in Divergent Bacteria , 2008, Science.

[14]  E. Pesci,et al.  Pseudomonas aeruginosa PqsA Is an Anthranilate-Coenzyme A Ligase , 2007, Journal of bacteriology.

[15]  Dianne K. Newman,et al.  Pyocyanin Alters Redox Homeostasis and Carbon Flux through Central Metabolic Pathways in Pseudomonas aeruginosa PA14 , 2007, Journal of bacteriology.

[16]  N. Barkai,et al.  Comparative analysis indicates regulatory neofunctionalization of yeast duplicates , 2007, Genome Biology.

[17]  L. Rahme,et al.  MvfR, a key Pseudomonas aeruginosa pathogenicity LTTR‐class regulatory protein, has dual ligands , 2006, Molecular microbiology.

[18]  D. Newman,et al.  The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa , 2006, Molecular microbiology.

[19]  Ran Kafri,et al.  The regulatory utilization of genetic redundancy through responsive backup circuits. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[20]  G. O’Toole,et al.  Saccharomyces cerevisiae-Based Molecular Tool Kit for Manipulation of Genes from Gram-Negative Bacteria , 2006, Applied and Environmental Microbiology.

[21]  E. Greenberg,et al.  A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum-Sensing Circuit , 2006, Journal of bacteriology.

[22]  D. Hassett,et al.  Modulation of lung epithelial functions by Pseudomonas aeruginosa. , 2005, Trends in microbiology.

[23]  X. Gu,et al.  Rapid evolution of expression and regulatory divergences after yeast gene duplication. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[24]  E. Greenberg,et al.  Timing and Localization of Rhamnolipid Synthesis Gene Expression in Pseudomonas aeruginosa Biofilms , 2005, Journal of bacteriology.

[25]  Eric Déziel,et al.  The contribution of MvfR to Pseudomonas aeruginosa pathogenesis and quorum sensing circuitry regulation: multiple quorum sensing‐regulated genes are modulated without affecting lasRI, rhlRI or the production of N‐acyl‐ l‐homoserine lactones , 2004, Molecular microbiology.

[26]  E. Greenberg,et al.  Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[27]  Lotte Lambertsen,et al.  Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. , 2004, Environmental microbiology.

[28]  D. Hassett,et al.  Pseudomonas aeruginosa Pyocyanin Is Critical for Lung Infection in Mice , 2004, Infection and Immunity.

[29]  L. Rahme,et al.  Electrospray/mass spectrometric identification and analysis of 4-hydroxy-2-alkylquinolines (HAQs) produced by Pseudomonas aeruginosa , 2004, Journal of the American Society for Mass Spectrometry.

[30]  D. Gevers,et al.  Gene duplication and biased functional retention of paralogs in bacterial genomes. , 2004, Trends in microbiology.

[31]  R. Tompkins,et al.  Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[32]  D. Hassett,et al.  Human targets of Pseudomonas aeruginosa pyocyanin , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[33]  Marina S. Kuznetsova,et al.  Functions Required for Extracellular Quinolone Signaling by Pseudomonas aeruginosa , 2002, Journal of bacteriology.

[34]  David A. D'Argenio,et al.  Autolysis and Autoaggregation in Pseudomonas aeruginosa Colony Morphology Mutants , 2002, Journal of bacteriology.

[35]  Richard C Boucher,et al.  Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. , 2002, The Journal of clinical investigation.

[36]  L. Thomashow,et al.  Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas aeruginosa PAO1 , 2001, Journal of bacteriology.

[37]  Emile Zuckerkandl,et al.  Intrinsically Driven Changes in Gene Interaction Complexity. I. Growth of Regulatory Complexes and Increase in Number of Genes , 2001, Journal of Molecular Evolution.

[38]  E. Greenberg,et al.  Promoter Specificity Elements in Pseudomonas aeruginosa Quorum-Sensing-Controlled Genes , 2001, Journal of bacteriology.

[39]  K. M. Lee,et al.  QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[40]  A F Bennett,et al.  Genetic architecture of thermal adaptation in Escherichia coli. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Nagel,et al.  Contact line deposits in an evaporating drop , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[42]  K. M. Lee,et al.  Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[43]  R. Levesque,et al.  ASD-GFP vectors for in vivo expression technology in Pseudomonas aeruginosa and other gram-negative bacteria. , 1998, BioTechniques.

[44]  F. Ausubel,et al.  Common virulence factors for bacterial pathogenicity in plants and animals. , 1995, Science.

[45]  J. Thomas,et al.  Thinking about genetic redundancy. , 1993, Trends in genetics : TIG.

[46]  D. Hassett,et al.  Response of Pseudomonas aeruginosa to pyocyanin: mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase , 1992, Infection and immunity.

[47]  R. Jensen,et al.  Biosynthesis of phenazine pigments in mutant and wild-type cultures of Pseudomonas aeruginosa , 1979, Journal of bacteriology.

[48]  Dr. Susumu Ohno Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[49]  E. Pérez-Rueda,et al.  New insights into the regulatory networks of paralogous genes in bacteria. , 2010, Microbiology.

[50]  L. Rahme,et al.  Drosophila melanogaster as a model host for studying Pseudomonas aeruginosa infection , 2009, Nature Protocols.

[51]  H. Schweizer,et al.  mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa , 2006, Nature Protocols.

[52]  X. Gu,et al.  Testing the parsimony test of genome duplications: a counterexample. , 2002, Genome research.

[53]  H. Schweizer,et al.  Integration-proficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains. , 2000, Plasmid.

[54]  A. Force,et al.  The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.

[55]  H. Schweizer,et al.  Escherichia-Pseudomonas shuttle vectors derived from pUC18/19. , 1991, Gene.

[56]  R. Herbert,et al.  Pigments of Pseudomonas species. IV. In vitro and in vivo conversion of 5-methylphenazinium-1-carboxylate into aeruginosin A. , 1972, Journal of the Chemical Society. Perkin transactions 1.