Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain

Nervous systems contain sensory neurons, local neurons, projection neurons and motor neurons. To understand how these building blocks form whole circuits, we must distil these broad classes into neuronal cell types and describe their network connectivity. Using an electron micrograph dataset for an entire Drosophila melanogaster brain, we reconstruct the first complete inventory of olfactory projections connecting the antennal lobe, the insect analogue of the mammalian olfactory bulb, to higher-order brain regions in an adult animal brain. We then connect this inventory to extant data in the literature, providing synaptic-resolution ‘holotypes’ both for heavily investigated and previously unknown cell types. Projection neurons are approximately twice as numerous as reported by light level studies; cell types are stereotyped, but not identical, in cell and synapse numbers between brain hemispheres. The lateral horn, the insect analogue of the mammalian cortical amygdala, is the main target for this olfactory information and has been shown to guide innate behaviour. Here, we find new connectivity motifs, including: axo-axonic connectivity between projection neurons; feedback and lateral inhibition of these axons by local neurons; and the convergence of different inputs, including non-olfactory inputs and memory-related feedback onto lateral horn neurons. This differs from the configuration of the second most prominent target for olfactory projection neurons: the mushroom body calyx, the insect analogue of the mammalian piriform cortex and a centre for associative memory. Our work provides a complete neuroanatomical platform for future studies of the adult Drosophila olfactory system. Highlights First complete parts list for second-order neurons of an adult olfactory system Quantification of left-right stereotypy in cell and synapse number Axo-axonic connections form hierarchical communities in the lateral horn Local neurons and memory-related feedback target projection neuron axons

[1]  Markus Knaden,et al.  Pheromones mediating copulation and attraction in Drosophila , 2015, Proceedings of the National Academy of Sciences.

[2]  Gilles Laurent,et al.  Transformation of Olfactory Representations in the Drosophila Antennal Lobe , 2004, Science.

[3]  Q. Gaudry,et al.  Identified Serotonergic Modulatory Neurons Have Heterogeneous Synaptic Connectivity within the Olfactory System of Drosophila , 2017, The Journal of Neuroscience.

[4]  Marie P. Suver,et al.  Encoding of Wind Direction by Central Neurons in Drosophila , 2018, Neuron.

[5]  Glenn C. Turner,et al.  Idiosyncratic neural coding and neuromodulation of olfactory individuality in Drosophila , 2019, Proceedings of the National Academy of Sciences.

[6]  James D. Manton,et al.  The natverse: a versatile computational toolbox to combine and analyse neuroanatomical data , 2014, bioRxiv.

[7]  Hokto Kazama,et al.  Decoding of Context-Dependent Olfactory Behavior in Drosophila , 2016, Neuron.

[8]  D. Cully,et al.  Identification of a Drosophila melanogaster Glutamate-gated Chloride Channel Sensitive to the Antiparasitic Agent Avermectin* , 1996, The Journal of Biological Chemistry.

[9]  Aravinthan D. T. Samuel,et al.  The wiring diagram of a glomerular olfactory system , 2016, bioRxiv.

[10]  Kei Ito,et al.  Organization of antennal lobe‐associated neurons in adult Drosophila melanogaster brain , 2012, The Journal of comparative neurology.

[11]  Richard Axel,et al.  Spatial Representation of the Glomerular Map in the Drosophila Protocerebrum , 2002, Cell.

[12]  Vincent A. Traag,et al.  From Louvain to Leiden: guaranteeing well-connected communities , 2018, Scientific Reports.

[13]  L. Luo,et al.  Comprehensive Maps of Drosophila Higher Olfactory Centers: Spatially Segregated Fruit and Pheromone Representation , 2007, Cell.

[14]  G. Technau,et al.  Gene expression profiles uncover individual identities of gnathal neuroblasts and serial homologies in the embryonic CNS of Drosophila , 2016, Development.

[15]  Eric T. Trautman,et al.  A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster , 2017, Cell.

[16]  Nélia Varela,et al.  Avoidance response to CO2 in the lateral horn , 2018, bioRxiv.

[17]  E. J. Clowney,et al.  Presynaptic developmental plasticity allows robust sparse wiring of the Drosophila mushroom body , 2019, bioRxiv.

[18]  R. Benton,et al.  Acid sensing by the Drosophila olfactory system , 2010, Nature.

[19]  Paola Patella,et al.  Functional Maps of Mechanosensory Features in the Drosophila Brain , 2018, Current Biology.

[20]  Jaison J. Omoto,et al.  Postembryonic lineages of the Drosophila brain: I. Development of the lineage-associated fiber tracts. , 2013, Developmental biology.

[21]  G. Laurent,et al.  Role of GABAergic Inhibition in Shaping Odor-Evoked Spatiotemporal Patterns in the Drosophila Antennal Lobe , 2005, The Journal of Neuroscience.

[22]  L. Abbott,et al.  Random Convergence of Olfactory Inputs in the Drosophila Mushroom Body , 2013, Nature.

[23]  Liang Liang,et al.  GABAergic Projection Neurons Route Selective Olfactory Inputs to Specific Higher-Order Neurons , 2013, Neuron.

[24]  Ilona C. Grunwald Kadow,et al.  A Neural Circuit Arbitrates between Persistence and Withdrawal in Hungry Drosophila , 2019, Neuron.

[25]  M. Stensmyr,et al.  The chemical ecology of the fly , 2015, Current Opinion in Neurobiology.

[26]  Giorgio A. Ascoli,et al.  Weighing the Evidence in Peters’ Rule: Does Neuronal Morphology Predict Connectivity? , 2017, Trends in Neurosciences.

[27]  Michael B. Reiser,et al.  Mapping the Neural Substrates of Behavior , 2017, Cell.

[28]  G. Rubin,et al.  The neuronal architecture of the mushroom body provides a logic for associative learning , 2014, eLife.

[29]  Kei Ito,et al.  Integration of Chemosensory Pathways in the Drosophila Second-Order Olfactory Centers , 2004, Current Biology.

[30]  Robert H Singer,et al.  Neurotransmitter identity is acquired in a lineage-restricted manner in the Drosophila CNS , 2019, eLife.

[31]  James M. Jeanne,et al.  The Organization of Projections from Olfactory Glomeruli onto Higher-Order Neurons , 2018, Neuron.

[32]  Paola Cognigni,et al.  Do the right thing: neural network mechanisms of memory formation, expression and update in Drosophila , 2018, Current Opinion in Neurobiology.

[33]  Yang Yu,et al.  Author response: The neuronal architecture of the mushroom body provides a logic for associative learning , 2014 .

[34]  D. Tolhurst,et al.  Characterizing the sparseness of neural codes , 2001 .

[35]  D. Chklovskii,et al.  Class-Specific Features of Neuronal Wiring , 2004, Neuron.

[36]  Gero Miesenböck,et al.  Mechanisms of Sensory Discrimination: Insights from Drosophila Olfaction. , 2019, Annual review of biophysics.

[37]  Gregory S.X.E. Jefferis,et al.  Neural circuit basis of aversive odour processing in Drosophila from sensory input to descending output , 2018 .

[38]  L. Abbott,et al.  Representations of Novelty and Familiarity in a Mushroom Body Compartment , 2017, Cell.

[39]  Ben Sutcliffe,et al.  Neurogenetic dissection of the Drosophila lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body , 2019, eLife.

[40]  Markus Knaden,et al.  Odor mixtures of opposing valence unveil inter-glomerular crosstalk in the Drosophila antennal lobe , 2019, Nature Communications.

[41]  Kristin Branson,et al.  A multilevel multimodal circuit enhances action selection in Drosophila , 2015, Nature.

[42]  G. Laurent,et al.  Synaptic potentials in the central terminals of locust proprioceptive afferents generated by other afferents from the same sense organ , 1993, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[43]  Rachel I. Wilson,et al.  Stereotyped connectivity and computations in higher-order olfactory neurons , 2013, Nature Neuroscience.

[44]  M. Stopfer,et al.  Dye fills reveal additional olfactory tracts in the protocerebrum of wild‐type Drosophila , 2012, The Journal of comparative neurology.

[45]  Kei Ito,et al.  Systematic Analysis of Neural Projections Reveals Clonal Composition of the Drosophila Brain , 2013, Current Biology.

[46]  Gregory S.X.E. Jefferis,et al.  Functional and Anatomical Specificity in a Higher Olfactory Centre , 2018 .

[47]  G. Jefferis,et al.  Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics , 2019, Current Opinion in Neurobiology.

[48]  Shawn R. Olsen,et al.  Sensory processing in the Drosophila antennal lobe increases reliability and separability of ensemble odor representations , 2007, Nature Neuroscience.

[49]  G. Rubin,et al.  Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila , 2014, eLife.

[50]  Kei Ito,et al.  Clonal analysis of Drosophila antennal lobe neurons: diverse neuronal architectures in the lateral neuroblast lineage , 2008, Development.

[51]  I. Meinertzhagen,et al.  Development and structure of synaptic contacts in Drosophila. , 2006, Seminars in cell & developmental biology.

[52]  William F Tobin,et al.  Wiring variations that enable and constrain neural computation in a sensory microcircuit , 2017, bioRxiv.

[53]  Yisheng He,et al.  A Complete Developmental Sequence of a Drosophila Neuronal Lineage as Revealed by Twin-Spot MARCM , 2010, PLoS biology.

[54]  Casey M. Schneider-Mizell,et al.  Quantitative neuroanatomy for connectomics in Drosophila , 2015, bioRxiv.

[55]  Gregory S.X.E. Jefferis,et al.  NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases , 2016, Neuron.

[56]  Andrew C. Lin,et al.  Sparse, Decorrelated Odor Coding in the Mushroom Body Enhances Learned Odor Discrimination , 2014, Nature Neuroscience.

[57]  L. Luo,et al.  Diversity and Wiring Variability of Olfactory Local Interneurons in the Drosophila Antennal Lobe , 2010, Nature Neuroscience.

[58]  S. Siegelbaum,et al.  Recurrent Circuitry Dynamically Shapes the Activation of Piriform Cortex , 2011, Neuron.

[59]  James M. Jeanne,et al.  Convergence, Divergence, and Reconvergence in a Feedforward Network Improves Neural Speed and Accuracy , 2015, Neuron.

[60]  Louis K. Scheffer,et al.  A resource for the Drosophila antennal lobe provided by the connectome of glomerulus VA1v , 2018, eLife.

[61]  Rachel I. Wilson,et al.  Glutamate is an inhibitory neurotransmitter in the Drosophila olfactory system , 2013, Proceedings of the National Academy of Sciences.

[62]  Nicolas Y. Masse,et al.  Olfactory Information Processing in Drosophila , 2009, Current Biology.

[63]  Guan-Yu Chen,et al.  Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution , 2011, Current Biology.

[64]  Gregory S.X.E. Jefferis,et al.  A Bidirectional Circuit Switch Reroutes Pheromone Signals in Male and Female Brains , 2013, Cell.

[65]  Y. Zhong,et al.  Long-term memory is formed immediately without the need for protein synthesis-dependent consolidation in Drosophila , 2019, Nature Communications.

[66]  Volker Hartenstein,et al.  Postembryonic lineages of the Drosophila brain: II. Identification of lineage projection patterns based on MARCM clones. , 2013, Developmental biology.

[67]  Kei Ito,et al.  A map of octopaminergic neurons in the Drosophila brain , 2009, The Journal of comparative neurology.

[68]  Hanchuan Peng,et al.  Clonal Development and Organization of the Adult Drosophila Central Brain , 2013, Current Biology.

[69]  Volker Hartenstein,et al.  Structure and development of the subesophageal zone of the Drosophila brain. I. Segmental architecture, compartmentalization, and lineage anatomy , 2018, The Journal of comparative neurology.

[70]  D. Bergles,et al.  Hair Cell Mechanotransduction Regulates Spontaneous Activity and Spiral Ganglion Subtype Specification in the Auditory System , 2018, Cell.

[71]  Casey M. Schneider-Mizell,et al.  Synaptic transmission parallels neuromodulation in a central food-intake circuit , 2016, bioRxiv.

[72]  Kei Ito,et al.  Gamma‐aminobutyric acid (GABA)‐mediated neural connections in the Drosophila antennal lobe , 2009, The Journal of comparative neurology.

[73]  I. Meinertzhagen,et al.  Synaptic organization of columnar elements in the lamina of the wild type in Drosophila melanogaster , 1991, The Journal of comparative neurology.

[74]  G. Rubin,et al.  Mushroom body efferent neurons responsible for aversive olfactory memory retrieval in Drosophila , 2011, Nature Neuroscience.

[75]  Martin Strauch,et al.  Integrating Heterogeneous Odor Response Data into a Common Response Model: A DoOR to the Complete Olfactome , 2010, Chemical senses.

[76]  M. Burrows,et al.  A presynaptic gain control mechanism among sensory neurons of a locust leg proprioceptor , 1994, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[77]  Dan D. Stettler,et al.  Driving Opposing Behaviors with Ensembles of Piriform Neurons , 2011, Cell.

[78]  Yoshinori Aso,et al.  Essential Role of the Mushroom Body in Context-Dependent CO2 Avoidance in Drosophila , 2013, Current Biology.

[79]  G. Rubin,et al.  Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila , 2018, Neuron.

[80]  Shawn R. Olsen,et al.  Lateral presynaptic inhibition mediates gain control in an olfactory circuit , 2008, Nature.

[81]  Rachel I. Wilson Early olfactory processing in Drosophila: mechanisms and principles. , 2013, Annual review of neuroscience.

[82]  Feng Li,et al.  Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment , 2019 .

[83]  Markus Knaden,et al.  Decoding odor quality and intensity in the Drosophila brain , 2014, eLife.

[84]  Enys Mones,et al.  Hierarchy Measure for Complex Networks , 2012, PloS one.

[85]  Stephan Saalfeld,et al.  CATMAID: collaborative annotation toolkit for massive amounts of image data , 2009, Bioinform..

[86]  I. G. Kadow,et al.  State-dependent plasticity of innate behavior in fruit flies , 2019, Current Opinion in Neurobiology.

[87]  Gero Miesenböck,et al.  Odor Discrimination in Drosophila: From Neural Population Codes to Behavior , 2013, Neuron.

[88]  Diego A. Pacheco,et al.  Auditory activity is diverse and widespread throughout the central brain of Drosophila , 2019, Nature Neuroscience.

[89]  Bill S Hansson,et al.  Elucidating the Neuronal Architecture of Olfactory Glomeruli in the Drosophila Antennal Lobe. , 2016, Cell reports.

[90]  Andrew C. Lin,et al.  Neuronal mechanisms underlying innate and learned olfactory processing in Drosophila. , 2019, Current opinion in insect science.

[91]  L. Luo,et al.  Representation of the Glomerular Olfactory Map in the Drosophila Brain , 2002, Cell.

[92]  Ariane Ramaekers,et al.  Developmental origin of wiring specificity in the olfactory system of Drosophila , 2004, Development.