Antisense Long Non-Coding RNAs Are Deregulated in Skin Tissue of Patients with Systemic Sclerosis.

[1]  Alex Kuo,et al.  Integrated, multicohort analysis of systemic sclerosis identifies robust transcriptional signature of disease severity. , 2016, JCI insight.

[2]  T. Sellers,et al.  Long non-coding RNAs (LncRNA) regulated by transforming growth factor (TGF) β. LncRNA-HIT-MEDIATED TGF-INDUCED EPITHELIAL TO MESENCHYMAL TRANSITION IN MAMMARY EPITHELIA. , 2016, The Journal of Biological Chemistry.

[3]  J. Rinn,et al.  "Cat's Cradling" the 3D Genome by the Act of LncRNA Transcription. , 2016, Molecular cell.

[4]  Shinichi Sato,et al.  CX3CR1 deficiency attenuates imiquimod-induced psoriasis-like skin inflammation with decreased M1 macrophages. , 2016, Journal of dermatological science.

[5]  J. Taube,et al.  To Control Site-Specific Skin Gene Expression, Autocrine Mimics Paracrine Canonical Wnt Signaling and Is Activated Ectopically in Skin Disease. , 2016, The American journal of pathology.

[6]  Z. Huang,et al.  Upregulated long non-coding RNA AGAP2-AS1 represses LATS2 and KLF2 expression through interacting with EZH2 and LSD1 in non-small-cell lung cancer cells , 2016, Cell Death and Disease.

[7]  S. Arron,et al.  Landscape of Long Noncoding RNAs in Psoriatic and Healthy Skin. , 2016, The Journal of investigative dermatology.

[8]  A. Sanders,et al.  Phosphoinositide-3-Kinase Enhancers, PIKEs: Their Biological Functions and Roles in Cancer. , 2016, Anticancer Research.

[9]  Huaxi Xu,et al.  The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto’s Thyroiditis , 2015, Scientific Reports.

[10]  Jeffrey T. Chang,et al.  Dissecting the Heterogeneity of Skin Gene Expression Patterns in Systemic Sclerosis , 2015, Arthritis & rheumatology.

[11]  T. Huizinga,et al.  Immunogenetics of rheumatoid arthritis: Understanding functional implications. , 2015, Journal of autoimmunity.

[12]  Daniel R. Caffrey,et al.  Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α , 2015, The Journal of Immunology.

[13]  V. Villegas,et al.  Neighboring Gene Regulation by Antisense Long Non-Coding RNAs , 2015, International journal of molecular sciences.

[14]  Jaclyn N. Taroni,et al.  Experimentally-Derived Fibroblast Gene Signatures Identify Molecular Pathways Associated with Distinct Subsets of Systemic Sclerosis Patients in Three Independent Cohorts , 2015, PloS one.

[15]  T. Sellers,et al.  Long Non-coding RNAs (LncRNA) Regulated by Transforming Growth Factor (TGF) β , 2015, The Journal of Biological Chemistry.

[16]  Derek W Wright,et al.  Gateways to the FANTOM5 promoter level mammalian expression atlas , 2015, Genome Biology.

[17]  Viktor Martyanov,et al.  Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms , 2015, PLoS Comput. Biol..

[18]  X. Corbella,et al.  Mortality and survival in systemic sclerosis: systematic review and meta-analysis. , 2014, Seminars in arthritis and rheumatism.

[19]  P. Khavari,et al.  ZNF750 interacts with KLF4 and RCOR1, KDM1A, and CTBP1/2 chromatin regulators to repress epidermal progenitor genes and induce differentiation genes , 2014, Genes & development.

[20]  Yoshihide Hayashizaki,et al.  Interactive visualization and analysis of large-scale sequencing datasets using ZENBU , 2014, Nature Biotechnology.

[21]  L. Joosten,et al.  Proteome-wide analysis and CXCL4 as a biomarker in systemic sclerosis. , 2014, The New England journal of medicine.

[22]  Xiao‐Jing Wang,et al.  CtBP1 over-expression in keratinocytes perturbs skin homeostasis , 2013, The Journal of investigative dermatology.

[23]  L. Steinmetz,et al.  Gene regulation by antisense transcription , 2013, Nature Reviews Genetics.

[24]  J. McGrath,et al.  Keratin 9 Is Required for the Structural Integrity and Terminal Differentiation of the Palmoplantar Epidermis , 2013, The Journal of investigative dermatology.

[25]  T. Radstake,et al.  Global chemokine expression in systemic sclerosis (SSc): CCL19 expression correlates with vascular inflammation in SSc skin , 2013, Annals of the rheumatic diseases.

[26]  Andrea Rau,et al.  Differential meta-analysis of RNA-seq data from multiple studies , 2013, BMC Bioinformatics.

[27]  Howard Y. Chang,et al.  Long Noncoding RNAs: Cellular Address Codes in Development and Disease , 2013, Cell.

[28]  M. Nishizawa,et al.  Stabilization of human interferon-α1 mRNA by its antisense RNA , 2012, Cellular and Molecular Life Sciences.

[29]  David G. Knowles,et al.  The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.

[30]  Bronwen L. Aken,et al.  GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.

[31]  Howard Y. Chang,et al.  Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.

[32]  M. Whitfield,et al.  Interspecies comparison of human and murine scleroderma reveals IL-13 and CCL2 as disease subset-specific targets. , 2012, The American journal of pathology.

[33]  S. Pendergrass,et al.  Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies , 2012, The Journal of investigative dermatology.

[34]  M. Esteller.  Non-coding RNAs in human disease , 2011, Nature Reviews Genetics.

[35]  C. Boileau,et al.  Insights into the pathogenesis of systemic sclerosis based on the gene expression profile of progenitor-derived endothelial cells. , 2011, Arthritis and rheumatism.

[36]  Ann Richmond,et al.  Chemokines in health and disease. , 2011, Experimental cell research.

[37]  Li Yang,et al.  Genomewide characterization of non-polyadenylated RNAs , 2011, Genome Biology.

[38]  Xiangyin Kong,et al.  Evidence for OTUD-6B Participation in B Lymphocytes Cell Cycle after Cytokine Stimulation , 2011, PloS one.

[39]  J. Cracowski,et al.  Association of the TNFAIP3 rs5029939 variant with systemic sclerosis in the European Caucasian population , 2010, Annals of the rheumatic diseases.

[40]  C. Wahlestedt,et al.  Regulatory roles of natural antisense transcripts , 2009, Nature Reviews Molecular Cell Biology.

[41]  Y. Daaka,et al.  Arf GTPase-activating Protein AGAP2 Regulates Focal Adhesion Kinase Activity and Focal Adhesion Remodeling* , 2009, Journal of Biological Chemistry.

[42]  L. Hummers,et al.  Abnormalities in the Regulators of Angiogenesis in Patients with Scleroderma , 2009, The Journal of Rheumatology.

[43]  Sarah A. Pendergrass,et al.  Molecular Subsets in the Gene Expression Signatures of Scleroderma Skin , 2008, PloS one.

[44]  R. Lafyatis,et al.  Cartilage oligomeric matrix protein expression in systemic sclerosis reveals heterogeneity of dermal fibroblast responses to transforming growth factor β , 2008, Annals of the rheumatic diseases.

[45]  Howard Y. Chang,et al.  A systems biology approach to anatomic diversity of skin. , 2008, The Journal of investigative dermatology.

[46]  Yong Zhang,et al.  CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine , 2007, Nucleic Acids Res..

[47]  M. Mayes,et al.  Gene profiling of scleroderma skin reveals robust signatures of disease that are imperfectly reflected in the transcript profiles of explanted fibroblasts. , 2006, Arthritis and rheumatism.

[48]  S. Batalov,et al.  Antisense Transcription in the Mammalian Transcriptome , 2005, Science.

[49]  David Botstein,et al.  Systemic and cell type-specific gene expression patterns in scleroderma skin , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[50]  S. Bombardieri,et al.  Anti‐collagen antibodies in systemic sclerosis and in primary Raynaud's phenomenon , 1995, Clinical and experimental immunology.

[51]  F. Bosch,et al.  Extensive changes in cytokeratin expression patterns in pathologically affected human gingiva , 1989, Virchows Archiv. B, Cell pathology including molecular pathology.

[52]  O. Braun-falco,et al.  Levels of type IV collagen and laminin fragments in serum from patients with progressive systemic sclerosis. , 1988, Journal of Rheumatology.

[53]  A. Masi.  Preliminary criteria for the classification of systemic sclerosis (scleroderma). , 1980, Bulletin on the rheumatic diseases.

[54]  I. Makałowska,et al.  Biological functions of natural antisense transcripts. , 2016, Acta biochimica Polonica.

[55]  R. Kurokawa,et al.  Long Noncoding RNAs , 2015, Springer Japan.