A Single-Objective Light-Sheet Microscope with 200 nm-Scale Resolution.

We present a single-objective light-sheet microscope, also known as an oblique-plane microscope, that uses a bespoke glass-tipped tertiary objective and improves the resolution, field of view, usability, and stability over previous variants. Owing to its high numerical aperture optics, this microscope achieves the highest lateral resolution in light-sheet fluorescence microscopy, and its axial resolution is similar to that of Lattice Light-Sheet Microscopy. Given this performance, we demonstrate high-resolution imaging of clathrin-mediated endocytosis, vimentin, the endoplasmic reticulum, membrane dynamics, and natural killer cell-mediated cell death. Furthermore, we image biological phenomena that would be otherwise challenging or impossible to perform in a traditional light-sheet microscope geometry, including cell migration through a confined space within a microfluidic device, photoactivation of PI3K, and diffusion of cytoplasmic rheological tracers at a volumetric rate of 14 Hz.

[1]  J. Orange,et al.  Nanoscale Dynamism of Actin Enables Secretory Function in Cytolytic Cells , 2018, Current Biology.

[2]  Martin Weigert,et al.  Removing Structured Noise with Self-Supervised Blind-Spot Networks , 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[3]  M. Beck,et al.  Fourier ring correlation as a resolution criterion for super-resolution microscopy. , 2013, Journal of structural biology.

[4]  H. Roderick,et al.  Calcium Signaling in Cardiomyocyte Function. , 2019, Cold Spring Harbor perspectives in biology.

[5]  Gaudenz Danuser,et al.  Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy , 2015, Biophysical journal.

[6]  O. Paulsen,et al.  Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates , 2012, Proceedings of the National Academy of Sciences.

[7]  Jennifer A Zallen,et al.  Multicellular rosette formation links planar cell polarity to tissue morphogenesis. , 2006, Developmental cell.

[8]  K. Flaherty,et al.  An organometallic protein kinase inhibitor pharmacologically activates p53 and induces apoptosis in human melanoma cells. , 2007, Cancer research.

[9]  Erik S. Welf,et al.  Migrating fibroblasts reorient directionality by a metastable, PI3K-dependent mechanism , 2012, The Journal of cell biology.

[10]  G. Whitesides,et al.  Soft lithography for micro- and nanoscale patterning , 2010, Nature Protocols.

[11]  M. Piel,et al.  Reconstitution of cell migration at a glance , 2019, Journal of Cell Science.

[12]  Daniel Kirschenbaum,et al.  The mesoSPIM initiative – open-source light-sheet microscopes for imaging cleared tissue , 2019, Nature Methods.

[13]  Philipp J. Keller,et al.  Three-dimensional preparation and imaging reveal intrinsic microtubule properties , 2007, Nature Methods.

[14]  K. Jaqaman,et al.  Robust single particle tracking in live cell time-lapse sequences , 2008, Nature Methods.

[15]  Wieland B Huttner,et al.  A tunable refractive index matching medium for live imaging cells, tissues and model organisms , 2017, eLife.

[16]  Dean Wilding,et al.  High-speed 2D and 3D fluorescence microscopy of cardiac myocytes. , 2011, Optics express.

[17]  Lisle W. Blackbourn,et al.  A Simple and Efficient System for Regulating Gene Expression in Human Pluripotent Stem Cells and Derivatives , 2014, Stem cells.

[18]  Joachim Herz,et al.  Reelin Activates Src Family Tyrosine Kinases in Neurons , 2003, Current Biology.

[19]  D. Stainier,et al.  Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM). , 2007, Optics letters.

[20]  Tobias Pietzsch,et al.  BigDataViewer: visualization and processing for large image data sets , 2015, Nature Methods.

[21]  K. Flaherty,et al.  Ki67 expression levels are a better marker of reduced melanoma growth following MEK inhibitor treatment than phospho-ERK levels , 2007, British Journal of Cancer.

[22]  Erik S. Welf,et al.  A unified role for membrane-cortex detachment during cell protrusion initiation , 2019, bioRxiv.

[23]  J. Orange,et al.  Lytic immune synapse function requires filamentous actin deconstruction by Coronin 1A , 2014, Proceedings of the National Academy of Sciences.

[24]  C Dunsby,et al.  Optically sectioned imaging by oblique plane microscopy. , 2008, Optics express.

[25]  Philippe Roudot,et al.  Universal light-sheet generation with field synthesis , 2019, Nature Methods.

[26]  Nico Stuurman,et al.  Epi-illumination SPIM for Volumetric Imaging with High Spatial-temporal Resolution , 2019, Nature Methods.

[27]  David S. Fischer,et al.  Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells , 2020, bioRxiv.

[28]  C. Heisenberg,et al.  Mechanochemical Feedback Loops in Development and Disease , 2019, Cell.

[29]  Erik S. Welf,et al.  Enhanced Dendritic Actin Network Formation in Extended Lamellipodia Drives Proliferation in Growth-Challenged Rac1P29S Melanoma Cells. , 2019, Developmental cell.

[30]  M. Neil,et al.  Remodelling of Cortical Actin Where Lytic Granules Dock at Natural Killer Cell Immune Synapses Revealed by Super-Resolution Microscopy , 2011, PLoS biology.

[31]  M. Postma,et al.  Robust and Bright Genetically Encoded Fluorescent Markers for Highlighting Structures and Compartments in Mammalian Cells , 2017, bioRxiv.

[32]  A. Descloux,et al.  Parameter-free image resolution estimation based on decorrelation analysis , 2019, Nature Methods.

[33]  F. Del Bene,et al.  Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy , 2004, Science.

[34]  Gaudenz Danuser,et al.  Profiling cellular morphodynamics by spatiotemporal spectrum decomposition , 2018, PLoS Comput. Biol..

[35]  Y. Saga,et al.  Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors. , 2016, Cell reports.

[36]  Christopher J. Obara,et al.  Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER , 2016, Science.

[37]  Robert M. Hoffman,et al.  Physical limits of cell migration: Control by ECM space and nuclear deformation and tuning by proteolysis and traction force , 2013, The Journal of cell biology.

[38]  D. Irvine,et al.  Cytoskeletal tension actively sustains the migratory T‐cell synaptic contact , 2020, The EMBO journal.

[39]  Gaël Varoquaux,et al.  The NumPy Array: A Structure for Efficient Numerical Computation , 2011, Computing in Science & Engineering.

[40]  Huafeng Liu,et al.  Rapid image deconvolution and multiview fusion for optical microscopy , 2020, Nature Biotechnology.

[41]  C. James,et al.  Single objective light-sheet microscopy for high-speed whole-cell 3D super-resolution. , 2016, Biomedical optics express.

[42]  Vincent Studer,et al.  3D high- and super-resolution imaging using single-objective SPIM , 2015, Nature Methods.

[43]  H. Rugo,et al.  Alpelisib for PIK3CA‐Mutated, Hormone Receptor–Positive Advanced Breast Cancer , 2019, The New England journal of medicine.

[44]  Michael W. Davidson,et al.  Actin Depletion Initiates Events Leading to Granule Secretion at the Immunological Synapse , 2015, Immunity.

[45]  X. Zhuang,et al.  Spatially resolved, highly multiplexed RNA profiling in single cells , 2015, Science.

[46]  Kevin M. Dean,et al.  Light-Sheet Microscopy of Cleared Tissues with Isotropic, Subcellular Resolution , 2019, Nature Methods.

[47]  Philipp J. Keller,et al.  Whole-animal functional and developmental imaging with isotropic spatial resolution , 2015, Nature Methods.

[48]  R. Voituriez,et al.  ESCRT III repairs nuclear envelope ruptures during cell migration to limit DNA damage and cell death , 2016, Science.

[49]  G. Mills,et al.  Hyperactivation of phosphatidylinositol-3 kinase promotes escape from hormone dependence in estrogen receptor-positive human breast cancer. , 2010, The Journal of clinical investigation.

[50]  M. Speekenbrink,et al.  depmixS4: An R Package for Hidden Markov Models , 2010 .

[51]  J. Flannery,et al.  Publisher Correction: Oblique-plane single-molecule localization microscopy for tissues and small intact animals , 2019, Nature Methods.

[52]  V. Maioli High-speed 3-D fluorescence imaging by oblique plane microscopy : multi-well plate-reader development, biological applications and image analysis , 2016 .

[53]  Sergey Kasparov,et al.  Efficient large-scale production and concentration of HIV-1-based lentiviral vectors for use in vivo. , 2003, Physiological genomics.

[54]  S. Jacques,et al.  Measurement of single cell refractive index, dry mass, volume, and density using a transillumination microscope. , 2012, Physical review letters.

[55]  Eric F. Wieschaus,et al.  Integration of contractile forces during tissue invagination , 2010, The Journal of cell biology.

[56]  Daniel Kirschenbaum,et al.  The mesoSPIM initiative: open-source light-sheet mesoscopes for imaging in cleared tissue , 2019, bioRxiv.

[57]  Jeremy A Pike,et al.  CRISPR-Cas9 Mediated Labelling Allows for Single Molecule Imaging and Resolution , 2017, Scientific Reports.

[58]  Jordan Nasenbeny,et al.  Integrated one- and two-photon scanned oblique plane illumination (SOPi) microscopy for rapid volumetric imaging. , 2018, Optics express.

[59]  Sandra L Schmid,et al.  Advances in analysis of low signal-to-noise images link dynamin and AP2 to the functions of an endocytic checkpoint. , 2013, Developmental cell.

[60]  Andrew G. York,et al.  High NA single-objective lightsheet , 2019 .

[61]  Zhuo Gan,et al.  Vimentin Intermediate Filaments Template Microtubule Networks to Enhance Persistence in Cell Polarity and Directed Migration. , 2016, Cell systems.

[62]  Philipp J. Keller,et al.  Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy , 2008, Science.

[63]  Wesley R. Legant,et al.  Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution , 2014, Science.

[64]  Kevin M. Dean,et al.  Systematic and quantitative comparison of lattice and Gaussian light-sheets. , 2020, Optics express.

[65]  Rainer Heintzmann,et al.  Estimating missing information by maximum likelihood deconvolution. , 2007, Micron.

[66]  M. van Heel,et al.  Fourier shell correlation threshold criteria. , 2005, Journal of structural biology.

[67]  Gerald M. Rubin,et al.  Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution , 2019, Science.

[68]  Marten Postma,et al.  mScarlet: a bright monomeric red fluorescent protein for cellular imaging , 2016, Nature Methods.

[69]  X. Xie,et al.  Single Molecule Imaging of Transcription Factor Binding to DNA in Live Mammalian Cells , 2013, Nature Methods.

[70]  P. De Camilli,et al.  Optogenetic control of phosphoinositide metabolism , 2012, Proceedings of the National Academy of Sciences.

[71]  B. Kuhlman,et al.  A genetically-encoded photoactivatable Rac controls the motility of living cells , 2009, Nature.

[72]  Justin Senseney,et al.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy , 2013, Nature Biotechnology.

[73]  Bob Goldstein,et al.  LITE microscopy: Tilted light-sheet excitation of model organisms offers high resolution and low photobleaching , 2018, The Journal of cell biology.

[74]  Hang Yu,et al.  Real-time volumetric microscopy of in-vivo dynamics and large-scale samples with SCAPE 2.0 , 2019, Nature Methods.

[75]  Cathrine A. Miner,et al.  Acquisition of Activation Receptor Ligand by Trogocytosis Renders NK Cells Hyporesponsive , 2015, The Journal of Immunology.

[76]  Stephan Preibisch,et al.  BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples , 2018 .

[77]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.

[78]  Jan Lammerding,et al.  Nuclear envelope rupture and repair during cancer cell migration , 2016, Science.

[79]  J. Orange,et al.  Cell biological steps and checkpoints in accessing NK cell cytotoxicity , 2014, Immunology and cell biology.

[80]  Florian Jug,et al.  Noise2Void - Learning Denoising From Single Noisy Images , 2018, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[81]  Erik S. Welf,et al.  Imaging Subcellular Dynamics with Fast and Light-Efficient Volumetrically Parallelized Microscopy. , 2017, Optica.

[82]  Herman I. May,et al.  Inhibition of class I histone deacetylases blunts cardiac hypertrophy through TSC2-dependent mTOR repression , 2016, Science Signaling.

[83]  D. Beebe,et al.  PDMS bonding by means of a portable, low-cost corona system. , 2006, Lab on a chip.

[84]  J. Groves,et al.  mTORC1 Controls Phase Separation and the Biophysical Properties of the Cytoplasm by Tuning Crowding , 2018, Cell.

[85]  Jeffrey R Moffitt,et al.  High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing , 2016, Proceedings of the National Academy of Sciences.

[86]  M. Davidson,et al.  Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics , 2015, Science.

[87]  Nassir Navab,et al.  A BaSiC tool for background and shading correction of optical microscopy images , 2017, Nature Communications.

[88]  Michael W. Davidson,et al.  Applying systems-level spectral imaging and analysis to reveal the organelle interactome , 2017, Nature.

[89]  R. Mann,et al.  Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms , 2014, Nature Photonics.