Home and away- the evolutionary dynamics of homing endonucleases
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Uri Obolski | Martin Kupiec | Lilach Hadany | Johann Peter Gogarten | M. Kupiec | J. Gogarten | U. Obolski | L. Hadany | Adi Barzel | A. Barzel
[1] Francine B. Perler,et al. InBase: the Intein Database , 2002, Nucleic Acids Res..
[2] J. Wang,et al. Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing. , 1996, Journal of molecular biology.
[3] E. Levanon,et al. Human housekeeping genes are compact. , 2003, Trends in genetics : TIG.
[4] O. Nosjean,et al. Meganuclease-Driven Targeted Integration in CHO-K1 Cells for the Fast Generation of HTS-Compatible Cell-Based Assays , 2010, Journal of biomolecular screening.
[5] Z. Hu,et al. A DnaB intein in Rhodothermus marinus: indication of recent intein homing across remotely related organisms. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[6] J. Cabaniols,et al. Robust cell line development using meganucleases. , 2008, Methods in molecular biology.
[7] D. Penny,et al. The biology of intron gain and loss. , 2006, Trends in genetics : TIG.
[8] T. Ohama,et al. Adaptation of intronic homing endonuclease for successful horizontal transmission , 2005, The FEBS journal.
[9] J. M. Smith,et al. The Logic of Animal Conflict , 1973, Nature.
[10] Austin Burt,et al. Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species. , 2004, Nucleic acids research.
[11] L. Derr,et al. A role for reverse transcripts in gene conversion , 1993, Nature.
[12] N. Neff,et al. Protein splicing elements: inteins and exteins--a definition of terms and recommended nomenclature. , 1994, Nucleic acids research.
[13] Frédéric Pâques,et al. Meganucleases and DNA double-strand break-induced recombination: perspectives for gene therapy. , 2007, Current gene therapy.
[14] G J Olsen,et al. Compilation and analysis of intein sequences. , 1997, Nucleic acids research.
[15] Yangrae Cho,et al. Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[16] A. Burt,et al. Adaptation for horizontal transfer in a homing endonuclease. , 2002, Molecular biology and evolution.
[17] C. W. Birky,et al. The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models. , 2001, Annual review of genetics.
[18] M. Lynch,et al. The Origins of Genome Complexity , 2003, Science.
[19] J. Palmer,et al. Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family. , 1999, Molecular biology and evolution.
[20] X. Didelot,et al. A comparison of homologous recombination rates in bacteria and archaea , 2009, The ISME Journal.
[21] M. Lynch,et al. Large global effective population sizes in Paramecium. , 2006, Molecular biology and evolution.
[22] Akira Sasaki,et al. Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer , 2009, Proceedings of the National Academy of Sciences.
[23] The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models. , 2001 .
[24] C. Fuqua,et al. Bacterial competition: surviving and thriving in the microbial jungle , 2010, Nature Reviews Microbiology.
[25] Olga Zhaxybayeva,et al. Inteins: structure, function, and evolution. , 2002, Annual review of microbiology.
[26] M. Lynch. Streamlining and simplification of microbial genome architecture. , 2006, Annual review of microbiology.
[27] T. Goodwin,et al. A nuclear‐encoded intein in the fungal pathogen Cryptococcus neoformans , 2001, Yeast.
[28] H. Goodrich-Blair,et al. Beyond Homing: Competition between Intron Endonucleases Confers a Selective Advantage on Flanking Genetic Markers , 1996, Cell.
[29] M. Neiman,et al. Inheritance and recombination of mitochondrial genomes in plants, fungi and animals. , 2005, The New phytologist.
[30] W. Doolittle,et al. Selfish DNA: The best defense is a good offense , 1996, Current Biology.
[31] S. Pietrokovski,et al. Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins , 1994, Protein science : a publication of the Protein Society.
[32] M. Kay,et al. Increased maintenance and persistence of transgenes by excision of expression cassettes from plasmid sequences in vivo. , 2005, Human gene therapy.
[33] Daniel G. Miller,et al. Frequent endonuclease cleavage at off-target locations in vivo. , 2010, Molecular therapy : the journal of the American Society of Gene Therapy.
[34] M. Feldman,et al. Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors , 2002, Nature.
[35] Maider Villate,et al. Efficient targeting of a SCID gene by an engineered single-chain homing endonuclease , 2009, Nucleic acids research.
[36] K. Ineichen,et al. Evolutionary dynamics of introns and homing endonuclease ORFs in a region of the large subunit of the mitochondrial rRNA in Glomus species (arbuscular mycorrhizal fungi, Glomeromycota). , 2010, Molecular phylogenetics and evolution.
[37] J. Haber. Mating-type gene switching in Saccharomyces cerevisiae. , 2015, Annual review of genetics.
[38] O. Schueler‐Furman,et al. Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family , 2009, Nucleic acids research.
[39] A. Burt,et al. Recurrent invasion and extinction of a selfish gene. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[40] J. Haber. Mating-type gene switching in Saccharomyces cerevisiae. , 1992, Trends in genetics : TIG.
[41] J. Gogarten,et al. Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements , 2006, BMC Evolutionary Biology.
[42] Tal Pupko,et al. Native homing endonucleases can target conserved genes in humans and in animal models , 2011, Nucleic acids research.
[43] J. Gogarten,et al. Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements , 2009, BMC Evolutionary Biology.
[44] S. Johansen,et al. Short-term sequence evolution and vertical inheritance of the Naegleria twin-ribozyme group I intron , 2006, BMC Evolutionary Biology.
[45] Y. Kashi,et al. Molecular-Genetic Biodiversity in a Natural Population of the Yeast Saccharomyces cerevisiae From “Evolution Canyon”: Microsatellite Polymorphism, Ploidy and Controversial Sexual Status , 2006, Genetics.
[46] A. Burt,et al. Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle , 2008, Proceedings of the National Academy of Sciences.
[47] R. P. Bonocora,et al. A Free-Standing Homing Endonuclease Targets an Intron Insertion Site in the psbA Gene of Cyanophages , 2009, Current Biology.
[48] P. Duchateau,et al. Engineered I-CreI derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells. , 2007, Journal of molecular biology.
[49] L Alexander Lyznik,et al. Heritable targeted mutagenesis in maize using a designed endonuclease. , 2010, The Plant journal : for cell and molecular biology.
[50] Hang Yang. In plants , expression breadth and expression level distinctly and non-linearly correlate with gene structure , 2009 .
[51] M. Hirsch,et al. Differential Equations, Dynamical Systems, and Linear Algebra , 1974 .
[52] J. Masson,et al. Inteins of Thermococcus fumicolans DNA Polymerase Are Endonucleases with Distinct Enzymatic Behaviors* , 2000, The Journal of Biological Chemistry.
[53] Martin Kupiec,et al. Homing endonucleases residing within inteins: evolutionary puzzles awaiting genetic solutions. , 2011, Biochemical Society transactions.
[54] B. Stoddard. Homing endonuclease structure and function , 2005, Quarterly Reviews of Biophysics.
[55] Cristian I. Castillo-Davis,et al. Selection for short introns in highly expressed genes , 2002, Nature Genetics.
[56] B. Stoddard,et al. Coevolution of a homing endonuclease and its host target sequence. , 2007, Journal of molecular biology.