Feedback control of pluripotency in embryonic stem cells: Signaling, transcription and epigenetics.
暂无分享,去创建一个
Dmitri Papatsenko | Avinash Waghray | D. Papatsenko | I. Lemischka | Avinash Waghray | Ihor R Lemischka | Dmitri A. Papatsenko
[1] K. Jung,et al. Feedback networks between microRNAs and epigenetic modifications in urological tumors , 2012, Epigenetics.
[2] Patrick S. Stumpf,et al. Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity , 2012, Nature Cell Biology.
[3] Hitoshi Niwa,et al. A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells , 2009, Nature.
[4] Ben D. MacArthur,et al. Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal , 2015, Stem cell reports.
[5] W. V. van IJcken,et al. Endogenous WNT Signals Mediate BMP-Induced and Spontaneous Differentiation of Epiblast Stem Cells and Human Embryonic Stem Cells , 2014, Stem cell reports.
[6] Yi-Wei Chen,et al. Lin28B/Let-7 Regulates Expression of Oct4 and Sox2 and Reprograms Oral Squamous Cell Carcinoma Cells to a Stem-like State. , 2015, Cancer research.
[7] Jennifer Nichols,et al. Promotion of Reprogramming to Ground State Pluripotency by Signal Inhibition , 2008, PLoS biology.
[8] J. Nichols,et al. The NuRD component Mbd3 is required for pluripotency of embryonic stem cells , 2006, Nature Cell Biology.
[9] Sandy L. Klemm,et al. Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase , 2012, Cell.
[10] A. Hao,et al. Oct4 is expressed in human gliomas and promotes colony formation in glioma cells , 2009, Glia.
[11] Ingo Roeder,et al. A Model-Based Analysis of Culture-Dependent Phenotypes of mESCs , 2014, PloS one.
[12] N. Mongan,et al. Regulation of stem cell pluripotency and differentiation involves a mutual regulatory circuit of the NANOG, OCT4, and SOX2 pluripotency transcription factors with polycomb repressive complexes and stem cell microRNAs. , 2009, Stem cells and development.
[13] S. Yamanaka,et al. Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[14] J. Nichols,et al. The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification , 2014, Nature Cell Biology.
[15] Alexei A. Sharov,et al. Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells , 2007, Nature Cell Biology.
[16] R. Bellazzi,et al. Gatekeeper of pluripotency: A common Oct4 transcriptional network operates in mouse eggs and embryonic stem cells , 2011, BMC Genomics.
[17] T. Yokota,et al. STAT3 and Oct-3/4 Control Histone Modification through Induction of Eed in Embryonic Stem Cells* , 2008, Journal of Biological Chemistry.
[18] Gene W. Yeo,et al. LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance. , 2012, Molecular cell.
[19] U. Bhalla,et al. Emergent properties of networks of biological signaling pathways. , 1999, Science.
[20] D. Pei,et al. EMT and MET as paradigms for cell fate switching. , 2012, Journal of molecular cell biology.
[21] M. Pera,et al. The pluripotent state in mouse and human , 2015, Development.
[22] K. Miyazono,et al. Roles of TGF-β family signaling in stem cell renewal and differentiation , 2009, Cell Research.
[23] Richard A Young,et al. Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. , 2010, Cell stem cell.
[24] J. Gingold,et al. A genome-wide RNAi screen identifies opposing functions of Snai1 and Snai2 on the Nanog dependency in reprogramming. , 2014, Molecular cell.
[25] Andras Czirok,et al. Autocrine FGF feedback can establish distinct states of Nanog expression in pluripotent stem cells: a computational analysis , 2014, BMC Systems Biology.
[26] P. Tam,et al. Extrinsic regulation of pluripotent stem cells , 2010, Nature.
[27] S. Yamanaka,et al. A developmental framework for induced pluripotency , 2015, Development.
[28] Alexei A. Sharov,et al. Systematic repression of transcription factors reveals limited patterns of gene expression changes in ES cells , 2013, Scientific Reports.
[29] L. Morey,et al. Pluripotency and Epigenetic Factors in Mouse Embryonic Stem Cell Fate Regulation , 2015, Molecular and Cellular Biology.
[30] Zohar Mukamel,et al. Deterministic direct reprogramming of somatic cells to pluripotency , 2013, Nature.
[31] A. Hadjantonakis,et al. GATA6 levels modulate primitive endoderm cell fate choice and timing in the mouse blastocyst. , 2014, Developmental cell.
[32] Jianlong Wang,et al. The SIN3A/HDAC Corepressor Complex Functionally Cooperates with NANOG to Promote Pluripotency. , 2017, Cell reports.
[33] P. Menéndez,et al. The miR-302-367 cluster as a potential stemness regulator in ESCs , 2009, Cell cycle.
[34] Radu Dobrin,et al. Dissecting self-renewal in stem cells with RNA interference , 2006, Nature.
[35] Danielle S. Bassett,et al. Learning, Memory, and the Role of Neural Network Architecture , 2011, PLoS Comput. Biol..
[36] Austin G Smith,et al. FGF stimulation of the Erk1/2 signalling cascade triggers transition of pluripotent embryonic stem cells from self-renewal to lineage commitment , 2007, Development.
[37] Samantha A. Morris,et al. Developmental Plasticity Is Bound by Pluripotency and the Fgf and Wnt Signaling Pathways , 2012, Cell reports.
[38] Jun Qin,et al. Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells , 2008, Nature Cell Biology.
[39] Janet Rossant,et al. Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse , 2009, Development.
[40] Austin G Smith,et al. JAK/STAT3 signalling is sufficient and dominant over antagonistic cues for the establishment of naive pluripotency , 2012, Nature Communications.
[41] S. Sokol. Maintaining embryonic stem cell pluripotency with Wnt signaling , 2011, Development.
[42] D. Papatsenko,et al. Quantitative Approaches to Model Pluripotency and Differentiation in Stem Cells , 2013 .
[43] G. Blin,et al. Bone morphogenic protein signalling suppresses differentiation of pluripotent cells by maintaining expression of E-Cadherin , 2013, eLife.
[44] A. Cooney,et al. Role of LIN28A in Mouse and Human Trophoblast Cell Differentiation1 , 2013, Biology of reproduction.
[45] Anagha Joshi,et al. Esrrb Is a Pivotal Target of the Gsk3/Tcf3 Axis Regulating Embryonic Stem Cell Self-Renewal , 2012, Cell stem cell.
[46] Hiroshi Kobayashi,et al. Epigenetic regulation of open chromatin in pluripotent stem cells. , 2015, Translational research : the journal of laboratory and clinical medicine.
[47] K. Miyazono,et al. Roles of TGF-β family signals in the fate determination of pluripotent stem cells. , 2014, Seminars in cell & developmental biology.
[48] P. Hájková,et al. DNA demethylation, Tet proteins and 5-hydroxymethylcytosine in epigenetic reprogramming: an emerging complex story. , 2014, Genomics.
[49] H. Lehrach,et al. Analysis of Oct4‐Dependent Transcriptional Networks Regulating Self‐Renewal and Pluripotency in Human Embryonic Stem Cells , 2007, Stem cells.
[50] T. Zwaka,et al. Development: Sketch for a Theory of Oct4 , 2013, Current Biology.
[51] L. Smirnova,et al. A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment , 2008, Nature Cell Biology.
[52] Alexei A. Sharov,et al. Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data , 2008, BMC Genomics.
[53] C. Tamm,et al. Regulation of mouse embryonic stem cell self-renewal by a Yes–YAP–TEAD2 signaling pathway downstream of LIF , 2011, Journal of Cell Science.
[54] Peter A. Jones,et al. OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes , 2011, Proceedings of the National Academy of Sciences.
[55] M. Araúzo-Bravo,et al. Epiblast Stem Cell Subpopulations Represent Mouse Embryos of Distinct Pregastrulation Stages , 2010, Cell.
[56] Julian Gingold,et al. Zfp281 mediates Nanog autorepression through recruitment of the NuRD complex and inhibits somatic cell reprogramming , 2012, Proceedings of the National Academy of Sciences.
[57] Jennifer Nichols,et al. The Transcriptional and Epigenomic Foundations of Ground State Pluripotency , 2012, Cell.
[58] Janet Rossant,et al. The role of FGF/Erk signaling in pluripotent cells , 2010, Development.
[59] Ingo Roeder,et al. Computational modelling of embryonic stem-cell fate control , 2015, Development.
[60] C. Eberhart,et al. DNMT-dependent suppression of microRNA regulates the induction of GBM tumor-propagating phenotype by Oct4 and Sox2 , 2014, Oncogene.
[61] R. Margueron,et al. Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation , 2015, Molecular cell.
[62] Jonathan M. Monk,et al. Wdr5 Mediates Self-Renewal and Reprogramming via the Embryonic Stem Cell Core Transcriptional Network , 2011, Cell.
[63] Michael Weber,et al. Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse , 2014, Genome Biology.
[64] M. Kaufman,et al. Establishment in culture of pluripotential cells from mouse embryos , 1981, Nature.
[65] J. Nichols,et al. Oct4 is required for lineage priming in the developing inner cell mass of the mouse blastocyst , 2014, Development.
[66] Megan F. Cole,et al. Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells , 2005, Cell.
[67] Kelsey E. Pierson,et al. TGF‐β‐Superfamily Signaling Regulates Embryonic Stem Cell Heterogeneity: Self‐Renewal as a Dynamic and Regulated Equilibrium , 2013, Stem cells.
[68] H. Aburatani,et al. BMP Sustains Embryonic Stem Cell Self-Renewal through Distinct Functions of Different Krüppel-like Factors , 2016, Stem cell reports.
[69] Ping Li,et al. Embryonic stem cell self‐renewal pathways converge on the transcription factor Tfcp2l1 , 2013, The EMBO journal.
[70] Y. Mishina,et al. BMP signalling inhibits premature neural differentiation in the mouse embryo , 2007, Development.
[71] H. Schöler,et al. Formation of Pluripotent Stem Cells in the Mammalian Embryo Depends on the POU Transcription Factor Oct4 , 1998, Cell.
[72] S. Kook,et al. Fibroblast Growth Factor-4 Enhances Proliferation of Mouse Embryonic Stem Cells via Activation of c-Jun Signaling , 2013, PloS one.
[73] S. Emmott,et al. Defining an essential transcription factor program for naïve pluripotency , 2014, Science.
[74] Manuel Serrano,et al. Epigenetic regulation of Nanog expression by Ezh2 in pluripotent stem cells , 2011, Cell cycle.
[75] J. Nichols,et al. BMP Induction of Id Proteins Suppresses Differentiation and Sustains Embryonic Stem Cell Self-Renewal in Collaboration with STAT3 , 2003, Cell.
[76] Efrat Oron,et al. Cell fate regulation in early mammalian development , 2012, Physical biology.
[77] J. Nichols,et al. Complementary tissue-specific expression of LIF and LIF-receptor mRNAs in early mouse embryogenesis , 1996, Mechanisms of Development.
[78] The many faces of Pluripotency: in vitro adaptations of a continuum of in vivo states , 2017, BMC Developmental Biology.
[79] H. Hirai,et al. Regulation of embryonic stem cell self-renewal and pluripotency by leukaemia inhibitory factor. , 2011, The Biochemical journal.
[80] D. Gao,et al. Coexpression of gene Oct4 and Nanog initiates stem cell characteristics in hepatocellular carcinoma and promotes epithelial-mesenchymal transition through activation of Stat3/Snail signaling , 2015, Journal of Hematology & Oncology.
[81] A. Hmadcha,et al. Transient Downregulation of Nanog and Oct4 Induced by DETA/NO Exposure in Mouse Embryonic Stem Cells Leads to Mesodermal/Endodermal Lineage Differentiation , 2014, Stem cells international.
[82] Yi Zhang,et al. SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex. , 2004, Molecular cell.
[83] W. Birchmeier,et al. E‐cadherin is crucial for embryonic stem cell pluripotency and can replace OCT4 during somatic cell reprogramming , 2011, EMBO reports.
[84] M. Zavolan,et al. MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells , 2008, Nature Structural &Molecular Biology.
[85] Avi Ma'ayan,et al. Construction and Validation of a Regulatory Network for Pluripotency and Self-Renewal of Mouse Embryonic Stem Cells , 2014, PLoS Comput. Biol..
[86] Y. Zhang,et al. H3K27me3 may be associated with Oct4 and Sox2 in mouse preimplantation embryos. , 2014, Genetics and molecular research : GMR.
[87] J. Zeitlinger,et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells , 2006, Nature.
[88] Debbie L C van den Berg,et al. An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells , 2010, Cell stem cell.
[89] A. Radzisheuskaya,et al. MBD3/NuRD Facilitates Induction of Pluripotency in a Context-Dependent Manner , 2014, Cell stem cell.
[90] Wing H Wong,et al. An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo , 2013, Molecular systems biology.
[91] S. Hung,et al. Oct4 and Nanog directly regulate Dnmt1 to maintain self-renewal and undifferentiated state in mesenchymal stem cells. , 2012, Molecular cell.
[92] Guoji Guo,et al. A genetic and developmental pathway from STAT3 to the OCT4-NANOG circuit is essential for maintenance of ICM lineages in vivo. , 2013, Genes & development.
[93] Jordi Garcia-Ojalvo,et al. A competitive protein interaction network buffers Oct4-mediated differentiation to promote pluripotency in embryonic stem cells , 2013, Molecular systems biology.
[94] Qi-Long Ying,et al. Gbx2, a LIF/Stat3 target, promotes reprogramming to and retention of the pluripotent ground state , 2013, Journal of Cell Science.
[95] Giulia Basile,et al. Intragenic DNA methylation prevents spurious transcription initiation , 2017, Nature.
[96] R. Kingston,et al. Transcriptional regulation by trithorax-group proteins. , 2014, Cold Spring Harbor perspectives in biology.
[97] B. Doble,et al. The ground state of embryonic stem cell self-renewal , 2008, Nature.
[98] Aviv Regev,et al. Deconstructing transcriptional heterogeneity in pluripotent stem cells , 2014, Nature.
[99] W. Reik,et al. Nanog-dependent function of Tet1 and Tet2 in establishment of pluripotency , 2013, Nature.
[100] T. Shimazaki,et al. Transient inhibition of BMP signaling by Noggin induces cardiomyocyte differentiation of mouse embryonic stem cells , 2005, Nature Biotechnology.
[101] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[102] Dongxin Zhao,et al. WNT/β-catenin pathway up-regulates Stat3 and converges on LIF to prevent differentiation of mouse embryonic stem cells , 2006 .
[103] M. Jaritz,et al. Polycomb complexes act redundantly to repress genomic repeats and genes. , 2010, Genes & development.
[104] R. Gregory,et al. Molecular Basis for Interaction of let-7 MicroRNAs with Lin28 , 2011, Cell.
[105] S. Yamanaka,et al. Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors , 2006, Cell.
[106] H. Aburatani,et al. Sall4 Is Essential for Stabilization, But Not for Pluripotency, of Embryonic Stem Cells by Repressing Aberrant Trophectoderm Gene Expression , 2009, Stem cells.
[107] Kim Sneppen,et al. Nanog, Oct4 and Tet1 interplay in establishing pluripotency , 2016, Scientific Reports.
[108] A. Radzisheuskaya,et al. Do all roads lead to Oct4? The emerging concepts of induced pluripotency , 2014, Trends in cell biology.
[109] A. Fatica,et al. Long non-coding RNAs: new players in cell differentiation and development , 2013, Nature Reviews Genetics.
[110] V. Vega,et al. Transcriptional regulatory networks in embryonic stem cells. , 2008, Cold Spring Harbor symposia on quantitative biology.
[111] Paul Bertone,et al. Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor , 2013, The EMBO journal.
[112] G. Hannon,et al. A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases , 2008, Nature Structural &Molecular Biology.