Rapid diagnosis and comprehensive bacteria profiling of sepsis based on cell-free DNA

[1]  T. Blauwkamp,et al.  Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious disease , 2019, Nature Microbiology.

[2]  E. Wang,et al.  eTumorRisk, an algorithm predicts cancer risk based on comutated gene networks in an individual’s germline genome , 2018, bioRxiv.

[3]  Frank Alber,et al.  CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data , 2018, Nucleic acids research.

[4]  Yinfeng Wang,et al.  Sepsis after uterine artery embolization-assisted termination of pregnancy with complete placenta previa: A case report , 2017, The Journal of international medical research.

[5]  David K. Stevenson,et al.  Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA , 2017, Proceedings of the National Academy of Sciences.

[6]  Edwin Wang,et al.  eTumorType, An Algorithm of Discriminating Cancer Types for Circulating Tumor Cells or Cell-free DNAs in Blood , 2017, Genom. Proteom. Bioinform..

[7]  Fengzhu Sun,et al.  CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA , 2017, Genome Biology.

[8]  Brian J. McGill,et al.  A network approach for inferring species associations from co-occurrence data , 2016 .

[9]  Yaozong Gao,et al.  Longitudinal clinical score prediction in Alzheimer's disease with soft-split sparse regression based random forest , 2016, Neurobiology of Aging.

[10]  A. von Haeseler,et al.  Next-generation sequencing diagnostics of bacteremia in septic patients , 2016, Genome Medicine.

[11]  Honglong Wu,et al.  Diagnosis of Sepsis with Cell-free DNA by Next-Generation Sequencing Technology in ICU Patients. , 2016, Archives of medical research.

[12]  S. Salzberg,et al.  Centrifuge: rapid and sensitive classification of metagenomic sequences , 2016, bioRxiv.

[13]  Karl Kashofer,et al.  Inferring expressed genes by whole-genome sequencing of plasma DNA , 2016, Nature Genetics.

[14]  M. Speicher,et al.  Co-occurrence of MYC amplification and TP53 mutations in human cancer , 2016, Nature Genetics.

[15]  T. Dunnebacke,et al.  Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing , 2016, Genome Medicine.

[16]  D. Ecker,et al.  Rapid Diagnosis of Infection in the Critically Ill, a Multicenter Study of Molecular Detection in Bloodstream Infections, Pneumonia, and Sterile Site Infections* , 2015, Critical care medicine.

[17]  Lance R. Martin,et al.  Noninvasive monitoring of infection and rejection after lung transplantation , 2015, Proceedings of the National Academy of Sciences.

[18]  V. Wong,et al.  Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients , 2015, Proceedings of the National Academy of Sciences.

[19]  C. Quince,et al.  Fluvial network organization imprints on microbial co-occurrence networks , 2014, Proceedings of the National Academy of Sciences.

[20]  Daniel Bernstein,et al.  Circulating Cell-Free DNA Enables Noninvasive Diagnosis of Heart Transplant Rejection , 2014, Science Translational Medicine.

[21]  T. Marshall,et al.  Inflammatory disease and the human microbiome. , 2014, Discovery medicine.

[22]  D. Angus,et al.  Epidemiology of severe sepsis , 2013, Virulence.

[23]  Z. Szallasi,et al.  Complete Genes May Pass from Food to Human Blood , 2013, PloS one.

[24]  R. Wiener,et al.  Utilization Patterns and Outcomes Associated With Central Venous Catheter in Septic Shock: A Population-Based Study* , 2013, Critical care medicine.

[25]  C. Sprung,et al.  Surviving Sepsis Campaign: International Guidelines for Management of Severe Sepsis and Septic Shock 2012 , 2013, Critical care medicine.

[26]  Fernand Gobet,et al.  Cognitive modelling of language acquisition with complex networks , 2012 .

[27]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[28]  Noah Fierer,et al.  Using network analysis to explore co-occurrence patterns in soil microbial communities , 2011, The ISME Journal.

[29]  J. Schrenzel,et al.  Comparative Analysis of PCR–Electrospray Ionization/Mass Spectrometry (MS) and MALDI-TOF/MS for the Identification of Bacteria and Yeast from Positive Blood Culture Bottles , 2011, Clinical chemistry.

[30]  Klaus Pantel,et al.  Cell-free nucleic acids as biomarkers in cancer patients , 2011, Nature Reviews Cancer.

[31]  E. Faist,et al.  Neutrophil-derived circulating free DNA (cf-DNA/NETs), a potential prognostic marker for mortality in patients with severe burn injury , 2010, European Journal of Trauma and Emergency Surgery.

[32]  Susan E. Sefers,et al.  Detection and Identification of Ehrlichia Species in Blood by Use of PCR and Electrospray Ionization Mass Spectrometry , 2009, Journal of Clinical Microbiology.

[33]  R. Sharan,et al.  Metabolic-network-driven analysis of bacterial ecological strategies , 2009, Genome Biology.

[34]  Derek C. Angus,et al.  National estimates of severe sepsis in United States emergency departments , 2007, Critical care medicine.

[35]  Eduardo P C Rocha,et al.  Replication‐associated gene dosage effects shape the genomes of fast‐growing bacteria but only for transcription and translation genes , 2006, Molecular microbiology.

[36]  E. Rocha.  Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. , 2004, Genome research.

[37]  Robert P. Sheridan,et al.  Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling , 2003, J. Chem. Inf. Comput. Sci..

[38]  P. Pickkers,et al.  Antibacterial therapy of adult patients with Sepsis , 2010 .

[39]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..