Searching for iron nanoparticles with a general-purpose Gaussian approximation potential

We present a general-purpose machine learning Gaussian approximation potential (GAP) for iron that is applicable to all bulk crystal structures found experimentally under diverse thermodynamic conditions, as well as surfaces and nanoparticles (NPs). By studying its phase diagram, we show that our GAP remains stable at extreme conditions, including those found in the Earth's core. The new GAP is particularly accurate for the description of NPs. We use it to identify new low-energy NPs, whose stability is verified by performing density functional theory calculations on the GAP structures. Many of these NPs are lower in energy than those previously available in the literature up to $N_\text{atoms}=100$. We further extend the convex hull of available stable structures to $N_\text{atoms}=200$. For these NPs, we study characteristic surface atomic motifs using data clustering and low-dimensional embedding techniques. With a few exceptions, e.g., at magic numbers $N_\text{atoms}=59$, $65$, $76$ and $78$, we find that iron tends to form irregularly shaped NPs without a dominant surface character or characteristic atomic motif, and no reminiscence of crystalline features. We hypothesize that the observed disorder stems from an intricate balance and competition between the stable bulk motif formation, with bcc structure, and the stable surface motif formation, with fcc structure. We expect these results to improve our understanding of the fundamental properties and structure of low-dimensional forms of iron, and to facilitate future work in the field of iron-based catalysis.

[1]  M. Caro,et al.  A general-purpose machine learning Pt interatomic potential for an accurate description of bulk, surfaces, and nanoparticles. , 2023, The Journal of chemical physics.

[2]  K. Ho,et al.  Ab Initio Melting Temperatures of Bcc and Hcp Iron Under the Earth’s Inner Core Condition , 2022, Geophysical Research Letters.

[3]  James P. Darby,et al.  Tensor-reduced atomic density representations , 2022, Physical review letters.

[4]  M. Caro,et al.  Cluster-based multidimensional scaling embedding tool for data visualization , 2022, Physica Scripta.

[5]  Gábor Csányi,et al.  Atomistic fracture in bcc iron revealed by active learning of Gaussian approximation potential , 2022, npj Computational Materials.

[6]  James P. Darby,et al.  Compressing local atomic neighbourhood descriptors , 2021, npj Computational Materials.

[7]  H. Mori,et al.  General-purpose neural network interatomic potential for the α -iron and hydrogen binary system: Toward atomic-scale understanding of hydrogen embrittlement , 2021, Physical Review Materials.

[8]  G. Serra,et al.  Atomistic Graph Neural Networks for metals: Application to bcc iron , 2021, 2109.14012.

[9]  Volker L. Deringer,et al.  Gaussian Process Regression for Materials and Molecules , 2021, Chemical reviews.

[10]  K. Thygesen,et al.  Atomic Simulation Recipes – A Python framework and library for automated workflows , 2021, 2104.13431.

[11]  Anna L. Garden,et al.  Development of a Structural Comparison Method to Promote Exploration of the Potential Energy Surface in the Global Optimization of Nanoclusters , 2021, J. Chem. Inf. Model..

[12]  Md Ariful Ahsan,et al.  Biomass-derived ultrathin carbon-shell coated iron nanoparticles as high-performance tri-functional HER, ORR and Fenton-like catalysts , 2020 .

[13]  Cheng Zhou,et al.  Size and promoter effects on iron nanoparticles confined in carbon nanotubes and their catalytic performance in light olefin synthesis from syngas , 2020 .

[14]  M. Marinica,et al.  Interatomic potentials for irradiation-induced defects in iron , 2020 .

[15]  James R Kermode,et al.  f90wrap: an automated tool for constructing deep Python interfaces to modern Fortran codes , 2020, Journal of physics. Condensed matter : an Institute of Physics journal.

[16]  Volker L. Deringer,et al.  Machine Learning Interatomic Potentials as Emerging Tools for Materials Science , 2019, Advanced materials.

[17]  K. Laasonen,et al.  Hydrogen Evolution Reaction on the Single-Shell Carbon-Encapsulated Iron Nanoparticle: A Density Functional Theory Insight , 2019, The Journal of Physical Chemistry C.

[18]  Miguel A. Caro,et al.  Optimizing many-body atomic descriptors for enhanced computational performance of machine learning based interatomic potentials , 2019, Physical Review B.

[19]  G. Morard,et al.  Solving Controversies on the Iron Phase Diagram Under High Pressure , 2018, Geophysical Research Letters.

[20]  Tomi Laurila,et al.  Reactivity of Amorphous Carbon Surfaces: Rationalizing the Role of Structural Motifs in Functionalization Using Machine Learning , 2018, Chemistry of materials : a publication of the American Chemical Society.

[21]  L. Pártay On the performance of interatomic potential models of iron: Comparison of the phase diagrams , 2018, Computational Materials Science.

[22]  N. Marzari,et al.  Vibrational and thermoelastic properties of bcc iron from selected EAM potentials , 2016, Computational Materials Science.

[23]  T. Laurila,et al.  Redox Potentials from Ab Initio Molecular Dynamics and Explicit Entropy Calculations: Application to Transition Metals in Aqueous Solution. , 2017, Journal of chemical theory and computation.

[24]  Michael Walter,et al.  The atomic simulation environment-a Python library for working with atoms. , 2017, Journal of physics. Condensed matter : an Institute of Physics journal.

[25]  Gabor Csanyi,et al.  Achieving DFT accuracy with a machine-learning interatomic potential: thermomechanics and defects in bcc ferromagnetic iron , 2017, 1706.10229.

[26]  Volker L. Deringer,et al.  Machine learning based interatomic potential for amorphous carbon , 2016, 1611.03277.

[27]  T. Laurila,et al.  Accurate schemes for calculation of thermodynamic properties of liquid mixtures from molecular dynamics simulations. , 2016, The Journal of chemical physics.

[28]  A. Sebetci,et al.  BH-DFTB/DFT calculations for iron clusters , 2016 .

[29]  Qiao Sun,et al.  Structural optimization of Fe nanoclusters based on multi-populations differential evolution algorithm , 2016, Journal of Nanoparticle Research.

[30]  Gábor Csányi,et al.  Gaussian approximation potentials: A brief tutorial introduction , 2015, 1502.01366.

[31]  K. Hirose,et al.  Composition and State of the Core , 2013 .

[32]  R. Kondor,et al.  On representing chemical environments , 2012, 1209.3140.

[33]  J. Bitter,et al.  Supported Iron Nanoparticles as Catalysts for Sustainable Production of Lower Olefins , 2012, Science.

[34]  D. Nguyen-Manh,et al.  Magnetic bond-order potential for iron. , 2011, Physical review letters.

[35]  P. Erhart,et al.  Analytic bond-order potential for bcc and fcc iron—comparison with established embedded-atom method potentials , 2007 .

[36]  Youcheng Li,et al.  Structures, binding energies and magnetic moments of small iron clusters: A study based on all-electron DFT , 2007 .

[37]  M. Parrinello,et al.  Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.

[38]  Noam Bernstein,et al.  Expressive Programming for Computational Physics in Fortran 950 , 2007 .

[39]  G. Seifert,et al.  Density functional based calculations for Fen (n ≤ 32) , 2005 .

[40]  Seungwu Han,et al.  Development of new interatomic potentials appropriate for crystalline and liquid iron , 2003 .

[41]  Xueyu Song,et al.  The melting lines of model systems calculated from coexistence simulations , 2002 .

[42]  G. Seifert,et al.  Scanning the potential energy surface of iron clusters: A novel search strategy , 2002 .

[43]  Melchionna Constrained systems and statistical distribution , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[44]  P. Entel,et al.  AB INITIO FULL-POTENTIAL STUDY OF THE STRUCTURAL AND MAGNETIC PHASE STABILITY OF IRON , 1999 .

[45]  G. Kresse,et al.  From ultrasoft pseudopotentials to the projector augmented-wave method , 1999 .

[46]  H. Jónsson,et al.  Nudged elastic band method for finding minimum energy paths of transitions , 1998 .

[47]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[48]  Kresse,et al.  Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set. , 1996, Physical review. B, Condensed matter.

[49]  G. Kresse,et al.  Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set , 1996 .

[50]  Walker,et al.  Site-specific Mössbauer evidence of structure-induced magnetic phase transition in fcc Fe(100) thin films. , 1995, Physical review letters.

[51]  Blöchl,et al.  Projector augmented-wave method. , 1994, Physical review. B, Condensed matter.

[52]  Li,et al.  Magnetic phases of ultrathin Fe grown on Cu(100) as epitaxial wedges. , 1994, Physical review letters.

[53]  Wang,et al.  Melting line of aluminum from simulations of coexisting phases. , 1994, Physical review. B, Condensed matter.

[54]  Hafner,et al.  Ab initio molecular dynamics for liquid metals. , 1995, Physical review. B, Condensed matter.

[55]  Di Tolla FD,et al.  Applicability of Nosé isothermal reversible dynamics. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[56]  Steve Plimpton,et al.  Fast parallel algorithms for short-range molecular dynamics , 1993 .

[57]  G. Ciccotti,et al.  Hoover NPT dynamics for systems varying in shape and size , 1993 .

[58]  Hoover,et al.  Time-reversible equilibrium and nonequilibrium isothermal-isobaric simulations with centered-difference Stoermer algorithms. , 1990, Physical review. A, Atomic, molecular, and optical physics.

[59]  A. Sutton,et al.  Long-range Finnis–Sinclair potentials , 1990 .

[60]  Hoover,et al.  Canonical dynamics: Equilibrium phase-space distributions. , 1985, Physical review. A, General physics.

[61]  H. Berendsen,et al.  Molecular dynamics with coupling to an external bath , 1984 .

[62]  M. Finnis,et al.  A simple empirical N-body potential for transition metals , 1984 .

[63]  S. Nosé A unified formulation of the constant temperature molecular dynamics methods , 1984 .

[64]  P. Steinhardt,et al.  Bond-orientational order in liquids and glasses , 1983 .

[65]  N. Ridley,et al.  Lattice parameter anomalies at the Curie point of pure iron , 1968 .

[66]  W. Hume-rothery,et al.  The lattice expansion of iron , 1955, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.