A systematic approach to orient the human protein–protein interaction network
暂无分享,去创建一个
[1] Benjamin J. Raphael,et al. Network propagation: a universal amplifier of genetic associations , 2017, Nature Reviews Genetics.
[2] J. Fisher,et al. Cell-Specific Computational Modeling of the PIM Pathway in Acute Myeloid Leukemia. , 2017, Cancer research.
[3] R. Sharan,et al. Elucidation of Signaling Pathways from Large-Scale Phosphoproteomic Data Using Protein Interaction Networks. , 2016, Cell systems.
[4] Sourav Bandyopadhyay,et al. Challenges in identifying cancer genes by analysis of exome sequencing data , 2016, Nature Communications.
[5] Anna Ritz,et al. Pathways on demand: automated reconstruction of human signaling networks , 2016, npj Systems Biology and Applications.
[6] Apostolos Malatras,et al. CellWhere: graphical display of interaction networks organized on subcellular localizations , 2015, Nucleic Acids Res..
[7] Janos X. Binder,et al. DISEASES: Text mining and data integration of disease–gene associations , 2014, bioRxiv.
[8] María Martín,et al. UniProt: A hub for protein information , 2015 .
[9] Benjamin J. Raphael,et al. Pan-Cancer Network Analysis Identifies Combinations of Rare Somatic Mutations across Pathways and Protein Complexes , 2014, Nature Genetics.
[10] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[11] Lenore Cowen,et al. New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence , 2014, Bioinform..
[12] Roded Sharan,et al. Network orientation via shortest paths , 2014, Bioinform..
[13] R. Sharan,et al. A Method for Predicting Protein-Protein Interaction Types , 2014, PloS one.
[14] David Haussler,et al. Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE) , 2013, Bioinform..
[15] R. Sharan. Toward a role model , 2013, EMBO reports.
[16] Benjamin J. Raphael,et al. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. , 2013, The New England journal of medicine.
[17] Steven J. M. Jones,et al. Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.
[18] Steven J. M. Jones,et al. Comprehensive molecular portraits of human breast tumors , 2012, Nature.
[19] Roded Sharan,et al. Reconstructing Boolean Models of Signaling , 2012, RECOMB.
[20] Ming Lu,et al. hUbiquitome: a database of experimentally verified ubiquitination cascades in humans , 2011, Database J. Biol. Databases Curation.
[21] Roded Sharan,et al. ANAT: A Tool for Constructing and Analyzing Functional Protein Networks , 2011, Science Signaling.
[22] A. Vinayagam,et al. A Directed Protein Interaction Network for Investigating Intracellular Signal Transduction , 2011, Science Signaling.
[23] Mehmet Koyutürk,et al. DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization , 2011, BioData Mining.
[24] Benjamin J. Raphael,et al. Integrated Genomic Analyses of Ovarian Carcinoma , 2011, Nature.
[25] Roded Sharan,et al. Optimally Orienting Physical Networks , 2011, RECOMB.
[26] Anupam Gupta,et al. Discovering pathways by orienting edges in protein interaction networks , 2010, Nucleic acids research.
[27] Mingming Jia,et al. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer , 2010, Nucleic Acids Res..
[28] Avi Ma'ayan,et al. ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments , 2010, Bioinform..
[29] Peer Bork,et al. Drug-Induced Regulation of Target Expression , 2010, PLoS Comput. Biol..
[30] Xin Chen,et al. DCDB: Drug combination database , 2010, Bioinform..
[31] Gary D Bader,et al. NetPath: a public resource of curated signal transduction pathways , 2010, Genome Biology.
[32] D. Lauffenburger,et al. Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction , 2009, Molecular systems biology.
[33] R. Aebersold,et al. Applying mass spectrometry-based proteomics to genetics, genomics and network biology , 2009, Nature Reviews Genetics.
[34] Steffen Klamt,et al. The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data , 2009, PLoS Comput. Biol..
[35] R. Sharan,et al. Toward accurate reconstruction of functional protein networks , 2009, Molecular systems biology.
[36] D. Karger,et al. Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity , 2009, Nature Genetics.
[37] David S. Wishart,et al. DrugBank: a knowledgebase for drugs, drug actions and drug targets , 2007, Nucleic Acids Res..
[38] Hans-Werner Mewes,et al. CORUM: the comprehensive resource of mammalian protein complexes , 2007, Nucleic Acids Res..
[39] Roded Sharan,et al. SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments , 2007, ISMB/ECCB.
[40] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[41] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[42] H. Lehrach,et al. A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.
[43] Péter Csermely,et al. The efficiency of multi-target drugs: the network approach might help drug design. , 2004, Trends in pharmacological sciences.
[44] P. Dessen,et al. An Atlas on genes and chromosomes in oncology and haematology. , 2004, Cellular and molecular biology.
[45] E. Kunkel. Systems biology in drug discovery , 2004, Nature Biotechnology.
[46] Tommi S. Jaakkola,et al. Physical Network Models , 2004, J. Comput. Biol..
[47] A. Kansal. Modeling approaches to type 2 diabetes. , 2004, Diabetes technology & therapeutics.
[48] J. Kornhauser,et al. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation , 2004, Proteomics.
[49] R. Christopher,et al. Data‐Driven Computer Simulation of Human Cancer Cell , 2004, Annals of the New York Academy of Sciences.
[50] U. Bhalla,et al. Emergent properties of networks of biological signaling pathways. , 1999, Science.
[51] S. Fields,et al. A novel genetic system to detect proteinprotein interactions , 1989, Nature.
[52] Roded Sharan,et al. Inference of Personalized Drug Targets via Network Propagation , 2016, PSB.
[53] Steven J. M. Jones,et al. Comprehensive molecular portraits of human breast tumours , 2013 .
[54] Justin Lamb,et al. The Connectivity Map: a new tool for biomedical research , 2007, Nature Reviews Cancer.
[55] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..