The landscape of inherited and de novo copy number variants in a plasmodium falciparum genetic cross
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Lisa Checkley | Michael T Ferdig | Asako Tan | M. Ferdig | Joseph M. Gonzales | Jigar J. Patel | Upeka Samarakoon | L. Checkley | Upeka Samarakoon | Asako Tan | Jigar J Patel | Joseph M Gonzales | Lisa A. Checkley
[1] Geoffrey H. Siwo,et al. Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum , 2010, BMC Genomics.
[2] Janel O. Johnson,et al. α-Synuclein Locus Triplication Causes Parkinson's Disease , 2003, Science.
[3] W. Kuo,et al. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays , 1998, Nature Genetics.
[4] D. Conway,et al. Gene copy number variation throughout the Plasmodium falciparum genome , 2009, BMC Genomics.
[5] John C. Tan,et al. Chloroquine susceptibility and reversibility in a Plasmodium falciparum genetic cross , 2010, Molecular microbiology.
[6] D. Watkins-Chow,et al. Genomic copy number and expression variation within the C57BL/6J inbred mouse strain. , 2007, Genome research.
[7] N. Day,et al. Plasmodium falciparum pfmdr1 Amplification, Mefloquine Resistance, and Parasite Fitness , 2009, Antimicrobial Agents and Chemotherapy.
[8] Deborah A Nickerson,et al. De novo rates and selection of large copy number variation. , 2010, Genome research.
[9] Zbynek Bozdech,et al. Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates , 2009, PLoS pathogens.
[10] Eileen Kraemer,et al. PlasmoDB: a functional genomic database for malaria parasites , 2008, Nucleic Acids Res..
[11] Asako Tan,et al. Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum. , 2009, Genomics.
[12] P. Cahan,et al. A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome , 2006, PLoS genetics.
[13] F. Nosten,et al. Recurrent gene amplification and soft selective sweeps during evolution of multidrug resistance in malaria parasites. , 2006, Molecular biology and evolution.
[14] A. Scherf,et al. Cloning and characterization of chromosome breakpoints of Plasmodium falciparum: breakage and new telomere formation occurs frequently and randomly in subtelomeric genes. , 1992, Nucleic acids research.
[15] E. Eichler,et al. Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution , 2007, Nature Genetics.
[16] Deepak Gaur,et al. Erythrocyte binding protein PfRH5 polymorphisms determine species-specific pathways of Plasmodium falciparum invasion. , 2008, Cell host & microbe.
[17] Kenny Q. Ye,et al. Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.
[18] Thomas J. Nicholas,et al. The genomic architecture of segmental duplications and copy number variants in dogs , 2009 .
[19] T. Triglia,et al. A chromosome 9 deletion in Plasmodium falciparum results in loss of cytoadherence. , 1992, Memorias do Instituto Oswaldo Cruz.
[20] A. Cowman,et al. Selection for high‐level chloroquine resistance results in deamplification of the pfmdr1 gene and increased sensitivity to mefloquine in Plasmodium falciparum. , 1992, The EMBO journal.
[21] J. Krungkrai,et al. Guanosine triphosphate cyclohydrolase in Plasmodium falciparum and other Plasmodium species. , 1985, Molecular and biochemical parasitology.
[22] Stylianos E. Antonarakis,et al. Chromosome 21 and Down syndrome: from genomics to pathophysiology , 2004, Nature Reviews Genetics.
[23] C. Wilson,et al. Amplification of a gene related to mammalian mdr genes in drug-resistant Plasmodium falciparum. , 1989, Science.
[24] M. Ferdig,et al. Gene copy number and malaria biology. , 2009, Trends in parasitology.
[25] Kenny Q. Ye,et al. Strong Association of De Novo Copy Number Mutations with Autism , 2007, Science.
[26] M. Gatton,et al. Deamplification of pfmdr1-Containing Amplicon on Chromosome 5 in Plasmodium falciparum Is Associated with Reduced Resistance to Artelinic Acid In Vitro , 2010, Antimicrobial Agents and Chemotherapy.
[27] S. Wuchty,et al. Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation , 2008, PLoS biology.
[28] J. Egly,et al. DNA Repair and Transcriptional Deficiencies Caused by Mutations in the Drosophila p52 Subunit of TFIIH Generate Developmental Defects and Chromosome Fragility , 2007, Molecular and Cellular Biology.
[29] J. Lupski,et al. Genomic disorders ten years on , 2009, Genome Medicine.
[30] E. Winzeler,et al. Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays. , 2005, Molecular and biochemical parasitology.
[31] Thomas E. Wellems,et al. Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum , 2000, Nature.
[32] Matthias Frank,et al. Frequent recombination events generate diversity within the multi-copy variant antigen gene families of Plasmodium falciparum. , 2008, International journal for parasitology.
[33] Junjun Zhang,et al. Hotspots for copy number variation in chimpanzees and humans. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[34] D. Bushnell,et al. Genes For Tfb2, Tfb3, and Tfb4 Subunits of Yeast Transcription/Repair Factor IIH , 1997, The Journal of Biological Chemistry.
[35] T. Triglia,et al. Amplification of the multidrug resistance gene pfmdr1 in Plasmodium falciparum has arisen as multiple independent events , 1991, Molecular and cellular biology.
[36] D. Conrad,et al. Global variation in copy number in the human genome , 2006, Nature.
[37] J. Haynes,et al. Culture of human malaria parasites Plasmodium falciparum , 1976, Nature.
[38] Thomas J. Nicholas,et al. The genomic architecture of segmental duplications and associated copy number variants in dogs. , 2008, Genome research.
[39] Ajay N. Jain,et al. Assembly of microarrays for genome-wide measurement of DNA copy number , 2001, Nature Genetics.
[40] Serge Batalov,et al. Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum , 2009, Genome Biology.
[41] Ming Yi,et al. Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray , 2008, BMC Genomics.
[42] A. Cowman,et al. Selection for mefloquine resistance in Plasmodium falciparum is linked to amplification of the pfmdr1 gene and cross-resistance to halofantrine and quinine. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[43] S. Nahashon,et al. An initial map of chromosomal segmental copy number variations in the chicken , 2010, BMC Genomics.
[44] L. Corcoran,et al. Chromosome size polymorphisms in plasmodium falciparum can involve deletions and are frequent in natural parasite populations , 1986, Cell.
[45] A. Singleton,et al. alpha-Synuclein locus triplication causes Parkinson's disease. , 2003, Science.
[46] L. Corcoran,et al. Homologous recombination within subtelomeric repeat sequences generates chromosome size polymorphisms in P. falciparum , 1988, Cell.
[47] John C. Tan,et al. High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum , 2011, BMC Genomics.
[48] D. Tautz,et al. Copy number changes of CNV regions in intersubspecific crosses of the house mouse. , 2010, Molecular biology and evolution.
[49] Tad S Sonstegard,et al. Analysis of copy number variations among diverse cattle breeds. , 2010, Genome research.
[50] J. E. Hyde,et al. Genetic and metabolic analysis of folate salvage in the human malaria parasite Plasmodium falciparum. , 2004, Molecular and biochemical parasitology.
[51] D. Pinkel,et al. Comparative Genomic Hybridization for Molecular Cytogenetic Analysis of Solid Tumors , 2022 .
[52] J. Mullikin,et al. Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains , 2005, Nature Genetics.
[53] W. Trager,et al. Human malaria parasites in continuous culture. , 1976, Science.
[54] S. Kyes,et al. Var gene diversity in Plasmodium falciparum is generated by frequent recombination events. , 2000, Molecular and biochemical parasitology.
[55] D. Kemp,et al. Subtelomeric chromosome deletions in field isolates of Plasmodium falciparum and their relationship to loss of cytoadherence in vitro. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[56] L. Feuk,et al. Detection of large-scale variation in the human genome , 2004, Nature Genetics.
[57] Joanne M. Morrisey,et al. Unidirectional dominance of cytoplasmic inheritance in two genetic crosses of Plasmodium falciparum , 1993, Molecular and cellular biology.
[58] Yingyao Zhou,et al. A Systematic Map of Genetic Variation in Plasmodium falciparum , 2006 .
[59] J. Ravetch,et al. Chromatin structure determines the sites of chromosome breakages in Plasmodium falciparum. , 1994, Nucleic Acids Research.
[60] N. French,et al. Genetic changes during laboratory propagation: copy number At the reticulocyte-binding protein 1 locus of Plasmodium falciparum. , 2010, Molecular and biochemical parasitology.
[61] P. Nilsson,et al. Genome wide gene amplifications and deletions in Plasmodium falciparum. , 2007, Molecular and biochemical parasitology.
[62] X. Su,et al. Dissecting the loci of low‐level quinine resistance in malaria parasites , 2004, Molecular microbiology.
[63] Christina A. Castellani,et al. Ontogenetic De Novo Copy Number Variations (CNVs) as a Source of Genetic Individuality: Studies on Two Families with MZD Twins for Schizophrenia , 2011, PloS one.
[64] Ira M. Hall,et al. Recurrent DNA copy number variation in the laboratory mouse , 2007, Nature Genetics.
[65] L. Feuk,et al. Structural variants: changing the landscape of chromosomes and design of disease studies. , 2006, Human molecular genetics.
[66] S. Foote,et al. Chromosomes of malaria parasites. , 1989, Trends in genetics : TIG.
[67] R. Carter,et al. Gene inactivation of Pf11‐1 of Plasmodium falciparum by chromosome breakage and healing: identification of a gametocyte‐specific protein with a potential role in gametogenesis. , 1992, The EMBO journal.
[68] A. Scherf,et al. Compartmentalization of genes coding for immunodominant antigens to fragile chromosome ends leads to dispersed subtelomeric gene families and rapid gene evolution in Plasmodium falciparum. , 1996, Molecular and biochemical parasitology.
[69] Tomas W. Fitzgerald,et al. Origins and functional impact of copy number variation in the human genome , 2010, Nature.
[70] Matthew Hurles,et al. Gene Duplication: The Genomic Trade in Spare Parts , 2004, PLoS biology.
[71] R. Carter,et al. Characterization of a Plasmodium falciparium mutant that has deleted the majority of the gametocyte-specific Pf11-1 locus. , 1992, Memorias do Instituto Oswaldo Cruz.
[72] Thomas W. Mühleisen,et al. Large recurrent microdeletions associated with schizophrenia , 2008, Nature.
[73] Hongyue Dai,et al. Widespread aneuploidy revealed by DNA microarray expression profiling , 2000, Nature Genetics.
[74] A. Scherf,et al. Subtelomeric chromosome instability in Plasmodium falciparum: short telomere-like sequence motifs found frequently at healed chromosome breakpoints. , 1994, Mutation research.
[75] A. Cowman,et al. Expression of the RESA gene in Plasmodium falciparum isolate FCR3 is prevented by a subtelomeric deletion , 1989, Molecular and cellular biology.
[76] A. Vaidya,et al. A genetic locus on Plasmodium falciparum chromosome 12 linked to a defect in mosquito-infectivity and male gametogenesis. , 1995, Molecular and biochemical parasitology.
[77] J C Wootton,et al. A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. , 1999, Science.
[78] M. Wahlgren,et al. A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number , 2008, Malaria Journal.
[79] Welch Bl. THE GENERALIZATION OF ‘STUDENT'S’ PROBLEM WHEN SEVERAL DIFFERENT POPULATION VARLANCES ARE INVOLVED , 1947 .
[80] C. B. Bridges,et al. THE BAR "GENE" A DUPLICATION. , 1936, Science.
[81] Hans H. Cheng,et al. A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. , 2009, Genome research.
[82] W. Stein,et al. Genetic Predisposition Favors the Acquisition of Stable Artemisinin Resistance in Malaria Parasites , 2010, Antimicrobial Agents and Chemotherapy.
[83] S. Bergmann,et al. Comparative genome hybridization reveals widespread aneuploidy in Candida albicans laboratory strains , 2005, Molecular microbiology.
[84] P. Newton,et al. Adaptive Copy Number Evolution in Malaria Parasites , 2008, PLoS genetics.
[85] T. Richmond,et al. Analysis of chromosome breakpoints in neuroblastoma at sub‐kilobase resolution using fine‐tiling oligonucleotide array CGH , 2005, Genes, chromosomes & cancer.
[86] S. V. Heesch,et al. Distribution and functional impact of DNA copy number variation in the rat , 2008, Nature Genetics.
[87] T. Wellems,et al. Genetic mapping of the chloroquine-resistance locus on Plasmodium falciparum chromosome 7. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[88] Jenn K Thompson,et al. Genes necessary for expression of a virulence determinant and for transmission of Plasmodium falciparum are located on a 0.3-megabase region of chromosome 9. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[89] Vivek Gopalan,et al. High recombination rates and hotspots in a Plasmodium falciparum genetic cross , 2011, Genome Biology.
[90] J. Ravetch,et al. A chromosomal rearrangement in a P. falciparum histidine-rich protein gene is associated with the knobless phenotype , 1986, Nature.
[91] C. Bendixen,et al. Copy number variation in the bovine genome , 2010, BMC Genomics.
[92] Arthur S. Lee,et al. Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies. , 2008, Human molecular genetics.
[93] J. Lupski,et al. Molecular analyses of unrelated Charcot-Marie-Tooth (CMT) disease patients suggest a high frequency of the CMTIA duplication. , 1993, American journal of human genetics.
[94] G. Churchill,et al. A statistical framework for quantitative trait mapping. , 2001, Genetics.
[95] R. Gibbs,et al. Genomic segmental polymorphisms in inbred mouse strains , 2004, Nature Genetics.
[96] J. Wootton,et al. Genetic mapping in the human malaria parasite Plasmodium falciparum , 2004, Molecular microbiology.
[97] C. Bendixen,et al. A Snapshot of CNVs in the Pig Genome , 2008, PloS one.
[98] T. Wellems,et al. Interchromosomal exchange of a large subtelomeric segment in a Plasmodium falciparum cross. , 1994, The EMBO journal.
[99] C. Claudel-Renard,et al. MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters , 2008, BMC Genomics.
[100] Takahito Watanabe,et al. A new approach to species determination for yeast strains: DNA microarray‐based comparative genomic hybridization using a yeast DNA microarray with 6000 genes , 2004, Yeast.
[101] R. Coppel,et al. Size variation in chromosomes from independent cultured isolates of Plasmodium falciparum , 1985, Nature.
[102] Philip M. Kim,et al. The current excitement about copy-number variation: how it relates to gene duplications and protein families. , 2008, Current opinion in structural biology.
[103] X. Su,et al. Disruption of a Plasmodium falciparum gene linked to male sexual development causes early arrest in gametocytogenesis. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[104] M. Pellegrini,et al. Copy number variation influences gene expression and metabolic traits in mice. , 2009, Human molecular genetics.
[105] J. Lupski,et al. Mechanisms of change in gene copy number , 2009, Nature Reviews Genetics.
[106] R. Redon,et al. Copy Number Variation: New Insights in Genome Diversity References , 2006 .