In situ coherent diffractive imaging

Coherent diffractive imaging (CDI) has been widely applied in the physical and biological sciences using synchrotron radiation, X-ray free-electron laser, high harmonic generation, electrons, and optical lasers. One of CDI’s important applications is to probe dynamic phenomena with high spatiotemporal resolution. Here, we report the development of a general in situ CDI method for real-time imaging of dynamic processes in solution. By introducing a time-invariant overlapping region as real-space constraint, we simultaneously reconstructed a time series of complex exit wave of dynamic processes with robust and fast convergence. We validated this method using optical laser experiments and numerical simulations with coherent X-rays. Our numerical simulations further indicated that in situ CDI can potentially reduce radiation dose by more than an order of magnitude relative to conventional CDI. With further development, we envision in situ CDI could be applied to probe a range of dynamic phenomena in the future.Coherent diffractive imaging (CDI) allows for high resolution imaging without lenses. Here, Lo et al. develop in situ CDI with real-time imaging and a corresponding low-dose requirement, with expected applications in the physical and life sciences.

[1]  Y. S. Meng,et al.  Topological defect dynamics in operando battery nanoparticles , 2015, Science.

[2]  S. Marchesini,et al.  Invited article: a [corrected] unified evaluation of iterative projection algorithms for phase retrieval. , 2006, The Review of scientific instruments.

[3]  J. Kirz,et al.  High-Resolution Imaging by Fourier Transform X-ray Holography , 1992, Science.

[4]  M. Newton,et al.  Coherent x-ray diffraction imaging of photo-induced structural changes in BiFeO3 nanocrystals , 2016 .

[5]  S. Marchesini,et al.  Chemical composition mapping with nanometre resolution by soft X-ray microscopy , 2014, Nature Photonics.

[6]  Changyong Song,et al.  Enhancing resolution in coherent x-ray diffraction imaging , 2016, Journal of physics. Condensed matter : an Institute of Physics journal.

[7]  J. Kirz,et al.  Soft X-ray microscopes and their biological applications , 1995, Quarterly Reviews of Biophysics.

[8]  J. Kirz,et al.  An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy. , 2005, Journal of Electron Spectroscopy and Related Phenomena.

[9]  Aydogan Ozcan,et al.  Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy , 2012, Nature Methods.

[10]  H. Graafsma,et al.  X-ray imaging detectors for synchrotron and XFEL sources , 2015, IUCrJ.

[11]  J. Kirz,et al.  High-resolution x-ray diffraction microscopy of specifically labeled yeast cells , 2010, Proceedings of the National Academy of Sciences.

[12]  David J Vine,et al.  Phase-diverse coherent diffractive imaging: high sensitivity with low dose. , 2011, Physical review letters.

[13]  X. Dai,et al.  Preliminary analysis of cellular sociology of co-cultured glioma initiating cells and macrophages in vitro , 2016 .

[14]  Ashish Tripathi,et al.  Dichroic coherent diffractive imaging , 2011, Proceedings of the National Academy of Sciences.

[15]  Garth J. Williams,et al.  Three-dimensional mapping of a deformation field inside a nanocrystal , 2006, Nature.

[16]  D. B. Cline,et al.  A compact x-ray free electron laser , 1988 .

[17]  Takashi Kameshima,et al.  Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging , 2014, Nature Communications.

[18]  Garth J. Williams,et al.  Single mimivirus particles intercepted and imaged with an X-ray laser , 2011, Nature.

[19]  O. Bunk,et al.  Ptychographic X-ray computed tomography at the nanoscale , 2010, Nature.

[20]  D. R. Luke Relaxed averaged alternating reflections for diffraction imaging , 2004, math/0405208.

[21]  R. Harder,et al.  Coherent X-ray diffraction imaging of strain at the nanoscale. , 2009, Nature materials.

[22]  Tetsuya Ishikawa,et al.  Three-dimensional visualization of a human chromosome using coherent X-ray diffraction. , 2009, Physical review letters.

[23]  S. Eisebitt,et al.  Lensless imaging of magnetic nanostructures by X-ray spectro-holography , 2004, Nature.

[24]  H. Johnson,et al.  A comparison of 'traditional' and multimedia information systems development practices , 2003, Inf. Softw. Technol..

[25]  Anton Barty,et al.  Ultrafast soft X-ray scattering and reference-enhanced diffractive imaging of weakly scattering nanoparticles , 2008 .

[26]  Ian McNulty,et al.  Ultrafast Three-Dimensional X-ray Imaging of Deformation Modes in ZnO Nanocrystals. , 2017, Nano letters.

[27]  Takashi Kimura,et al.  Imaging live cell in micro-liquid enclosure by X-ray laser diffraction , 2014, Nature Communications.

[28]  Jingjuan Zhang,et al.  Phase-retrieval algorithms applied in a 4-f system for optical image encryption: a comparison , 2005, SPIE/COS Photonics Asia.

[29]  Joshua W. Shaevitz,et al.  Massively parallel X-ray holography , 2008 .

[30]  Yonina C. Eldar,et al.  Phase Retrieval with Application to Optical Imaging: A contemporary overview , 2015, IEEE Signal Processing Magazine.

[31]  Masaki Yamamoto,et al.  Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses. , 2013, Nature communications.

[32]  S. Hädrich,et al.  Lensless diffractive imaging using tabletop coherent high-harmonic soft-X-ray beams. , 2007, Physical review letters.

[33]  Changyong Song,et al.  Resolution enhancement in coherent x-ray diffraction imaging by overcoming instrumental noise. , 2014, Optics express.

[34]  J. Miao,et al.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy , 2010, Proceedings of the National Academy of Sciences.

[35]  J. Miao,et al.  Beyond crystallography: Diffractive imaging using coherent x-ray light sources , 2015, Science.

[36]  Ronald M. Berndt,et al.  A Contemporary Overview , 1988 .

[37]  J. Miao,et al.  Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens , 1999, Nature.

[38]  Justin S. Wark,et al.  Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals , 2013, Science.

[39]  Yonina C. Eldar,et al.  Sparsity-based single-shot sub-wavelength coherent diffractive imaging , 2011, 2012 IEEE 27th Convention of Electrical and Electronics Engineers in Israel.

[40]  J. Miao,et al.  Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects , 1998 .

[41]  Garth J. Williams,et al.  Keyhole coherent diffractive imaging , 2008 .

[42]  S Marchesini,et al.  Invited article: a [corrected] unified evaluation of iterative projection algorithms for phase retrieval. , 2006, The Review of scientific instruments.

[43]  J. F. Creemer,et al.  Nanoscale chemical imaging of a working catalyst by scanning transmission X-ray microscopy , 2008, Nature.

[44]  J. Miao,et al.  Quantitative imaging of single, unstained viruses with coherent x rays. , 2008, Physical review letters.

[45]  F. Ross Opportunities and challenges in liquid cell electron microscopy , 2015, Science.

[46]  A. G. Cullis,et al.  Hard-x-ray lensless imaging of extended objects. , 2007, Physical review letters.

[47]  J. Kirz,et al.  Biological imaging by soft x-ray diffraction microscopy , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[48]  J. Miao,et al.  Three-dimensional coherent x-ray diffraction imaging of molten iron in mantle olivine at nanoscale resolution. , 2013, Physical review letters.

[49]  Ti-Yen Lan,et al.  Method to enhance the resolution of x-ray coherent diffraction imaging for non-crystalline bio-samples , 2014 .

[50]  D. Ratner,et al.  First lasing and operation of an ångstrom-wavelength free-electron laser , 2010 .

[51]  Henry C. Kapteyn,et al.  Subwavelength coherent imaging of periodic samples using a 13.5 nm tabletop high-harmonic light source , 2017, Nature Photonics.

[52]  Gabriel Aeppli,et al.  High-resolution non-destructive three-dimensional imaging of integrated circuits , 2017, Nature.

[53]  R. Harder,et al.  In Situ Bragg Coherent Diffraction Imaging Study of a Cement Phase Microcrystal during Hydration , 2015 .

[54]  J. Miao,et al.  Oversampling smoothness: an effective algorithm for phase retrieval of noisy diffraction intensities. , 2012, Journal of applied crystallography.

[55]  Ian McNulty,et al.  Nanoscale imaging of buried structures with elemental specificity using resonant x-ray diffraction microscopy. , 2008, Physical review letters.

[56]  S. Marchesini,et al.  High-resolution ab initio three-dimensional x-ray diffraction microscopy. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[57]  Michael F Toney,et al.  In Operando X-ray diffraction and transmission X-ray microscopy of lithium sulfur batteries. , 2012, Journal of the American Chemical Society.

[58]  F. Pfeiffer,et al.  Quantitative biological imaging by ptychographic x-ray diffraction microscopy , 2009, Proceedings of the National Academy of Sciences.

[59]  K. Yonekura,et al.  Signal enhancement and Patterson-search phasing for high-spatial-resolution coherent X-ray diffraction imaging of biological objects , 2015, Scientific Reports.

[60]  J. Rodenburg,et al.  An improved ptychographical phase retrieval algorithm for diffractive imaging. , 2009, Ultramicroscopy.

[61]  Bruce Dunn,et al.  In situ transmission electron microscopy of lead dendrites and lead ions in aqueous solution. , 2012, ACS nano.

[62]  R. Horstmeyer,et al.  Wide-field, high-resolution Fourier ptychographic microscopy , 2013, Nature Photonics.

[63]  H. Kettenmann,et al.  The brain tumor microenvironment , 2011, Glia.

[64]  W. H. Benner,et al.  Femtosecond diffractive imaging with a soft-X-ray free-electron laser , 2006, physics/0610044.

[65]  Yukio Takahashi,et al.  Multiple defocused coherent diffraction imaging: method for simultaneously reconstructing objects and probe using X-ray free-electron lasers. , 2016, Optics express.

[66]  Jean-Marie Tarascon,et al.  Li-O2 and Li-S batteries with high energy storage. , 2011, Nature materials.

[67]  B. L. Henke,et al.  X-Ray Interactions: Photoabsorption, Scattering, Transmission, and Reflection at E = 50-30,000 eV, Z = 1-92 , 1993 .

[68]  O. Bunk,et al.  High-Resolution Scanning X-ray Diffraction Microscopy , 2008, Science.

[69]  M. Murnane,et al.  Bright Coherent Ultrahigh Harmonics in the keV X-ray Regime from Mid-Infrared Femtosecond Lasers , 2012, Science.

[70]  P Zapol,et al.  Avalanching strain dynamics during the hydriding phase transformation in individual palladium nanoparticles , 2015, Nature Communications.