Rare Variant Association Testing for Sequencing Data Using the Sequence Kernel Association Test ( SKAT )
暂无分享,去创建一个
Xihong Lin | M. Boehnke | T. Cai | Yun Li | Seunggeun Lee | Michael C. Wu
[1] Xihong Lin. Variance component testing in generalised linear models with random effects , 1997 .
[2] Tong Zhang,et al. An Introduction to Support Vector Machines and Other Kernel-Based Learning Methods , 2001, AI Mag..
[3] F. Fleuret,et al. Scale-Invariance of Support Vector Machines based on the Triangular Kernel , 2001 .
[4] P. Bork,et al. Human non-synonymous SNPs: server and survey. , 2002, Nucleic acids research.
[5] S. Gabriel,et al. Calibrating a coalescent simulation of human genome sequence variation. , 2005, Genome research.
[6] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[7] D. Reich,et al. Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.
[8] W. Thilly,et al. A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (CAST). , 2007, Mutation research.
[9] Xihong Lin,et al. Semiparametric Regression of Multidimensional Genetic Pathway Data: Least‐Squares Kernel Machines and Linear Mixed Models , 2007, Biometrics.
[10] S. Leal,et al. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. , 2008, American journal of human genetics.
[11] Dawei Liu,et al. Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models , 2008, BMC Bioinformatics.
[12]
R. Durbin,et al.
Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P ,
2022
.
[13]
Xihong Lin,et al.
A powerful and flexible multilocus association test for quantitative traits.
,
2008,
American journal of human genetics.
[14]
Amy E. Hawkins,et al.
DNA sequencing of a cytogenetically normal acute myeloid leukemia genome
,
2008,
Nature.
[15]
E. Mardis.
Next-generation DNA sequencing methods.
,
2008,
Annual review of genomics and human genetics.
[16]
Suzanne M. Leal,et al.
Discovery of Rare Variants via Sequencing: Implications for the Design of Complex Trait Association Studies
,
2009,
PLoS genetics.
[17]
K. Frazer,et al.
Common vs. rare allele hypotheses for complex diseases.
,
2009,
Current opinion in genetics & development.
[18]
Huan Liu,et al.
A new chi-square approximation to the distribution of non-negative definite quadratic forms in non-central normal variables
,
2009,
Comput. Stat. Data Anal..
[19]
S. Browning,et al.
A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic
,
2009,
PLoS genetics.
[20]
W. Ansorge.
Next-generation DNA sequencing techniques.
,
2009,
New biotechnology.
[21]
Huanming Yang,et al.
SNP detection for massively parallel whole-genome resequencing.
,
2009,
Genome research.
[22]
Eric Boerwinkle,et al.
Rare loss-of-function mutations in ANGPTL family members contribute to plasma triglyceride levels in humans.
,
2008,
The Journal of clinical investigation.
[23]
F. Collins,et al.
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
,
2009,
Proceedings of the National Academy of Sciences.
[24]
Wei Pan,et al.
Asymptotic tests of association with multiple SNPs in linkage disequilibrium
,
2009,
Genetic epidemiology.
[25]
S. Henikoff,et al.
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
,
2009,
Nature Protocols.
[26]
Yun Li,et al.
Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes.
,
2010,
American journal of human genetics.
[27]
L. Carvajal-Carmona,et al.
Challenges in the identification and use of rare disease-associated predisposition variants.
,
2010,
Current opinion in genetics & development.
[28]
Shamil R Sunyaev,et al.
Pooled association tests for rare variants in exon-resequencing studies.
,
2010,
American journal of human genetics.
[29]
Jason H. Moore,et al.
Missing heritability and strategies for finding the underlying causes of complex disease
,
2010,
Nature Reviews Genetics.
[30]
Eleftheria Zeggini,et al.
Rare variant association analysis methods for complex traits.
,
2010,
Annual review of genetics.
[31]
E. Zeggini,et al.
An Evaluation of Statistical Approaches to Rare Variant Analysis in Genetic Association Studies
,
2009,
Genetic epidemiology.
[32]
Olivier Harismendy,et al.
Accurate detection and genotyping of SNPs utilizing population sequencing data.
,
2010,
Genome research.
[33]
Pierre Lafaye de Micheaux,et al.
Computing the distribution of quadratic forms: Further comparisons between the Liu-Tang-Zhang approximation and exact methods
,
2010,
Comput. Stat. Data Anal..
[34]
Deanne M. Taylor,et al.
Powerful SNP-set analysis for case-control genome-wide association studies.
,
2010,
American journal of human genetics.
[35]
Wei Pan,et al.
A Data-Adaptive Sum Test for Disease Association with Multiple Common or Rare Variants
,
2010,
Human Heredity.
[36]
Kathryn Roeder,et al.
Testing for an Unusual Distribution of Rare Variants
,
2011,
PLoS genetics.
[37]
Emmanouil Collab.
A map of human genome variation from population-scale sequencing
,
2011,
Nature.
[38]
Power and sample size calculations for designing rare variant sequencing association studies
,
2011
.