Exudate segmentation using fully convolutional neural networks and inception modules

Diabetic retinopathy is an eye disease associated with diabetes mellitus and also it is the leading cause of preventable blindness in working-age population. Early detection and treatment of DR is essential to prevent vision loss. Exudates are one of the earliest signs of diabetic retinopathy. This paper proposes an automatic method for the detection and segmentation of exudates in fundus photographies. A novel fully convolutional neural network architecture with Inception modules is proposed. Compared to other methods it does not require the removal of other anatomical structures. Furthermore, a transfer learning approach is applied between small datasets of different modalities from the same domain. To the best of authors’ knowledge, it is the first time that such approach has been used in the exudate segmentation domain. The proposed method was evaluated using publicly available E-Ophtha datasets. It achieved better results than the state-of-the-art methods in terms of sensitivity and specificity metrics. The proposed algorithm accomplished better results using a diseased/not diseased evaluation scenario which indicates its applicability for screening purposes. Simplicity, performance, efficiency and robustness of the proposed method demonstrate its suitability for diabetic retinopathy screening applications.

[1]  N. Otsu A threshold selection method from gray level histograms , 1979 .

[2]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[3]  Andrew L. Maas Rectifier Nonlinearities Improve Neural Network Acoustic Models , 2013 .

[4]  Jacques Wainer,et al.  Points of Interest and Visual Dictionaries for Automatic Retinal Lesion Detection , 2012, IEEE Transactions on Biomedical Engineering.

[5]  Guy Cazuguel,et al.  TeleOphta: Machine learning and image processing methods for teleophthalmology , 2013 .

[6]  Roberto Hornero,et al.  Detection of Hard Exudates in Retinal Images Using a Radial Basis Function Classifier , 2009, Annals of Biomedical Engineering.

[7]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[8]  Tien Yin Wong,et al.  Diabetic retinopathy , 2010, The Lancet.

[9]  Hamid Reza Pourreza,et al.  A novel method for retinal exudate segmentation using signal separation algorithm , 2016, Comput. Methods Programs Biomed..

[10]  Huiqi Li,et al.  Automated feature extraction in color retinal images by a model based approach , 2004, IEEE Transactions on Biomedical Engineering.

[11]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[12]  Manuel João Oliveira Ferreira,et al.  Exudate segmentation in fundus images using an ant colony optimization approach , 2015, Inf. Sci..

[13]  J. Shaw,et al.  Global estimates of diabetes prevalence for 2013 and projections for 2035. , 2014, Diabetes Research and Clinical Practice.

[14]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[15]  Trevor Darrell,et al.  Fully Convolutional Networks for Semantic Segmentation , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[16]  Gwénolé Quellec,et al.  Exudate detection in color retinal images for mass screening of diabetic retinopathy , 2014, Medical Image Anal..

[17]  C. Sinthanayothin,et al.  Automated detection of diabetic retinopathy on digital fundus images , 2002, Diabetic medicine : a journal of the British Diabetic Association.

[18]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[19]  Matthijs C. Dorst Distinctive Image Features from Scale-Invariant Keypoints , 2011 .

[20]  B. van Ginneken,et al.  Automated detection and differentiation of drusen, exudates, and cotton-wool spots in digital color fundus photographs for diabetic retinopathy diagnosis. , 2007, Investigative ophthalmology & visual science.

[21]  Martín Abadi,et al.  TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems , 2016, ArXiv.

[22]  Atsuto Maki,et al.  From generic to specific deep representations for visual recognition , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW).

[23]  András Hajdu,et al.  Automatic exudate detection using active contour model and regionwise classification , 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[24]  Luc Van Gool,et al.  Speeded-Up Robust Features (SURF) , 2008, Comput. Vis. Image Underst..