Preparing semisynthetic and fully synthetic histones h3 and h4 to modify the nucleosome core.

The purpose of this chapter is to provide practical chemical ligation procedures to prepare histone proteins suitable for the reconstitution of nucleosomes with specific posttranslational modifications in the nucleosome core. Detailed methods are described for the efficient preparation of semisynthetic histones H3 and H4 with modifications near the C-terminus of the proteins by expressed protein ligation and desulfurization. Additionally, we present optimized protocols for solid phase peptide synthesis combined with sequential native chemical ligation to generate fully synthetic modified histone H3, here in the context of H3 lysine 56 acetylation (H3K56ac).

[1]  C. Hackenberger The reduction of oxidized methionine residues in peptide thioesters with NH4I-Me2S. , 2006, Organic & biomolecular chemistry.

[2]  Michael G. Poirier,et al.  Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling , 2011, Nucleic acids research.

[3]  Stephen B. H. Kent,et al.  In situ Neutralization in Boc‐Chemistry ‐ Solid Phase Peptide Synthesis. , 1993 .

[4]  Stephen B. H. Kent,et al.  In situ neutralization in Boc-chemistry solid phase peptide synthesis. Rapid, high yield assembly of difficult sequences. , 2009 .

[5]  T. Richmond,et al.  Expression and purification of recombinant histones and nucleosome reconstitution. , 1999, Methods in molecular biology.

[6]  R. Kornberg,et al.  Chromatin structure; oligomers of the histones. , 1974, Science.

[7]  Yongxin Han,et al.  Occurrence and Minimization of Cysteine Racemization during Stepwise Solid-Phase Peptide Synthesis(1)(,)(2). , 1997, The Journal of organic chemistry.

[8]  J. W. Picking,et al.  Acetylation of Histone H3 at the Nucleosome Dyad Alters DNA-Histone Binding* , 2009, The Journal of Biological Chemistry.

[9]  S. Danishefsky,et al.  Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptides. , 2007, Angewandte Chemie.

[10]  Erica L. Mersfelder,et al.  The tale beyond the tail: histone core domain modifications and the regulation of chromatin structure , 2006, Nucleic acids research.

[11]  Sarah Javaid,et al.  Nucleosome remodeling by hMSH2-hMSH6. , 2009, Molecular cell.

[12]  T. Muir,et al.  Chemical Approaches for Studying Histone Modifications* , 2010, The Journal of Biological Chemistry.

[13]  T. Muir,et al.  Native Chemical Ligation of Polypeptides , 1999, Current protocols in protein science.

[14]  M. Poirier,et al.  Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes. , 2011, Journal of molecular biology.

[15]  Robert A. Forties,et al.  Histone fold modifications control nucleosome unwrapping and disassembly , 2011, Proceedings of the National Academy of Sciences.

[16]  C. Allis,et al.  Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis". , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[17]  P. Dawson,et al.  An efficient Fmoc-SPPS approach for the generation of thioester peptide precursors for use in native chemical ligation. , 2008, Angewandte Chemie.

[18]  T. Richmond,et al.  Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.

[19]  J. Griffin,et al.  Protein synthesis by native chemical ligation: expanded scope by using straightforward methodology. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[20]  J. Ottesen,et al.  A Reversible Protection Strategy To Improve Fmoc‐SPPS of Peptide Thioesters by the N‐Acylurea Approach , 2011, Chembiochem : a European journal of chemical biology.