Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
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Norman E. Davey | L. Steinmetz | M. Hentze | T. Preiss | Alfredo Castello | Bernd Fischer | Katrin Eichelbaum | R. Horos | B. Beckmann | Claudia Strein | N. Davey | D. Humphreys | J. Krijgsveld
[1] Y. Levy. Intrinsically disordered regions as affinity tuners in protein–DNA interactions , 2012 .
[2] Mihaela Zavolan,et al. PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif. , 2011, RNA.
[3] L. Twyffels,et al. Shuttling SR proteins: more than splicing factors , 2011, The FEBS journal.
[4] P. Gallay,et al. Cyclophilin A Interacts with Domain II of Hepatitis C Virus NS5A and Stimulates RNA Binding in an Isomerase-Dependent Manner , 2011, Journal of Virology.
[5] J. Darnell,et al. Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction , 2011, Nature Structural &Molecular Biology.
[6] Yaakov Levy,et al. DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail , 2010, Proceedings of the National Academy of Sciences.
[7] Sarath Chandra Janga,et al. A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes , 2010, PloS one.
[8] R. Russell,et al. WD40 proteins propel cellular networks. , 2010, Trends in biochemical sciences.
[9] Robert B Darnell,et al. RNA regulation in neurologic disease and cancer. , 2010, Cancer research and treatment : official journal of Korean Cancer Association.
[10] Julia Salzman,et al. Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae , 2010, PloS one.
[11] M. Hentze,et al. The REM phase of gene regulation. , 2010, Trends in biochemical sciences.
[12] Matthias W. Hentze,et al. Two to Tango: Regulation of Mammalian Iron Metabolism , 2010, Cell.
[13] Mohsen Khorshid,et al. PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins , 2010, Journal of visualized experiments : JoVE.
[14] Scott B. Dewell,et al. Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP , 2010, Cell.
[15] J. Hansen,et al. Multifunctionality of the linker histones: an emerging role for protein-protein interactions , 2010, Cell Research.
[16] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[17] L. Lessard,et al. The two faces of PTP1B in cancer. , 2010, Biochimica et biophysica acta.
[18] Y. Levy,et al. Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tails. , 2010, Journal of molecular biology.
[19] Matthias Mann,et al. Unbiased RNA–protein interaction screen by quantitative proteomics , 2009, Proceedings of the National Academy of Sciences.
[20] Jennifer L. Bachorik,et al. Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains , 2009, Nature Structural &Molecular Biology.
[21] R. Aebersold,et al. Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes , 2009, PLoS biology.
[22] Lili Wan,et al. RNA and Disease , 2009, Cell.
[23] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[24] Steven P Gygi,et al. The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry , 2008, Nature Protocols.
[25] V. Tiranti,et al. FASTKD2 nonsense mutation in an infantile mitochondrial encephalomyopathy associated with cytochrome c oxidase deficiency. , 2008, American journal of human genetics.
[26] Kai-Wei Chang,et al. RNA-binding proteins in human genetic disease. , 2008, Trends in genetics : TIG.
[27] T. Glisovic,et al. RNA‐binding proteins and post‐transcriptional gene regulation , 2008, FEBS letters.
[28] M. Cristina Cardoso,et al. A Versatile Nanotrap for Biochemical and Functional Studies with Fluorescent Fusion Proteins*S , 2008, Molecular & Cellular Proteomics.
[29] Jingwu Z. Zhang,et al. Cyclophilin A Is Required for CXCR4-mediated Nuclear Export of Heterogeneous Nuclear Ribonucleoprotein A2, Activation and Nuclear Translocation of ERK1/2, and Chemotactic Cell Migration* , 2008, Journal of Biological Chemistry.
[30] Gabriele Varani,et al. RNA is rarely at a loss for companions; as soon as RNA , 2008 .
[31] Patrick G. A. Pedrioli,et al. A high-quality catalog of the Drosophila melanogaster proteome , 2007, Nature Biotechnology.
[32] Christopher J. Oldfield,et al. Intrinsic disorder and functional proteomics. , 2007, Biophysical journal.
[33] Z. Dominski,et al. Characterization of 3′hExo, a 3′ Exonuclease Specifically Interacting with the 3′ End of Histone mRNA* , 2006, Journal of Biological Chemistry.
[34] J. Ebert,et al. The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA , 2006, Cell.
[35] Joachim M. Buhmann,et al. Semi-supervised LC/MS alignment for differential proteomics , 2006, ISMB.
[36] A. Pastore,et al. Fragile X Mental Retardation Protein (FMRP) Binds Specifically to the Brain Cytoplasmic RNAs BC1/BC200 via a Novel RNA-binding Motif* , 2005, Journal of Biological Chemistry.
[37] P. Tompa,et al. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. , 2005, Journal of molecular biology.
[38] C. Thiele,et al. Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells , 2005, Nature Methods.
[39] H. Dyson,et al. Intrinsically unstructured proteins and their functions , 2005, Nature Reviews Molecular Cell Biology.
[40] Lincoln Stein,et al. Reactome: a knowledgebase of biological pathways , 2004, Nucleic Acids Res..
[41] S. Burley,et al. She2p Is a Novel RNA Binding Protein with a Basic Helical Hairpin Motif , 2004, Cell.
[42] Ian Lee,et al. RAP--a putative RNA-binding domain. , 2004, Trends in biochemical sciences.
[43] Peter Tompa,et al. The role of structural disorder in the function of RNA and protein chaperones , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[44] S. Shetty,et al. Regulation of urokinase receptor expression by phosphoglycerate kinase. , 2004, American journal of respiratory cell and molecular biology.
[45] Gordon K Smyth,et al. Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .
[46] Jernej Ule,et al. CLIP Identifies Nova-Regulated RNA Networks in the Brain , 2003, Science.
[47] Gary Brewer,et al. Lactate Dehydrogenase Is an AU-rich Element-binding Protein That Directly Interacts with AUF1* , 2002, The Journal of Biological Chemistry.
[48] J. Xu,et al. Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain , 2002, Cytogenetic and Genome Research.
[49] Eugene V Koonin,et al. Comparative genomics and evolution of proteins involved in RNA metabolism. , 2002, Nucleic acids research.
[50] D. Thiel,et al. Lack of catalytic activity of a murine mRNA cytoplasmic serine hydroxymethyltransferase splice variant: evidence against alternative splicing as a regulatory mechanism. , 2001, Biochemistry.
[51] L. Grivell,et al. Isolation and RNA-binding analysis of NAD+-isocitrate dehydrogenases from Kluyveromyces lactis and Schizosaccharomyces pombe , 2000, Current Genetics.
[52] O. Kops,et al. A nuclear RNA‐binding cyclophilin in human T cells , 1996, FEBS letters.
[53] J. Hofsteenge,et al. AUH, a gene encoding an AU-specific RNA binding protein with intrinsic enoyl-CoA hydratase activity. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[54] Eszter Nagy,et al. Glyceraldehyde-3-phosphate Dehydrogenase Selectively Binds AU-rich RNA in the NAD+-binding Region (Rossmann Fold) (*) , 1995, The Journal of Biological Chemistry.
[55] M. Hentze,et al. Enzymes as RNA-binding proteins: a role for (di)nucleotide-binding domains? , 1994, Trends in biochemical sciences.
[56] L. Grivell,et al. Yeast mitochondrial NAD(+)-dependent isocitrate dehydrogenase is an RNA-binding protein. , 1993, Nucleic acids research.
[57] P. Argos,et al. Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase. , 1991, Nucleic acids research.
[58] R. Klausner,et al. Structural relationship between an iron-regulated RNA-binding protein (IRE-BP) and aconitase: Functional implications , 1991, Cell.
[59] P. V. von Hippel,et al. Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system. , 1986, The Journal of biological chemistry.
[60] G. Dreyfuss,et al. Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies , 1984, Molecular and cellular biology.
[61] J R Greenberg,et al. Ultraviolet light-induced crosslinking of mRNA to proteins. , 1979, Nucleic acids research.
[62] D. Söll,et al. Analogs of methionyl-tRNA synthetase substrates containing photolabile groups. , 1977, Nucleic acids research.
[63] M. Sternberg,et al. Protein structure prediction on the Web: a case study using the Phyre server , 2009, Nature Protocols.
[64] J. Somarelli,et al. Spliceosomal immunophilins , 2008, FEBS letters.
[65] M. Mann,et al. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips , 2007, Nature Protocols.
[66] J. Cieśla. Metabolic enzymes that bind RNA: yet another level of cellular regulatory network? , 2006, Acta biochimica Polonica.
[67] G. Goldspink,et al. RNA–protein interactions of the 3′ untranslated regions of myosin heavy chain transcripts , 2004, Journal of Muscle Research & Cell Motility.
[68] Ingrid Lönnstedt. Replicated microarray data , 2001 .
[69] D. Angelov,et al. Crosslinking proteins to nucleic acids by ultraviolet laser irradiation. , 1991, Trends in biochemical sciences.
[70] R. Brimacombe,et al. [19] Intra-RNA and RNA—protein cross-linking techniques in Escherichia coli ribosomes , 1988 .
[71] R. Brimacombe,et al. Intra-RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes. , 1988, Methods in enzymology.