Multi-Scalar Data Integration Links Glomerular Angiopoietin-Tie Signaling Pathway Activation With Progression of Diabetic Kidney Disease
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I. D. de Boer | Min Chen | S. Waikar | N. Bansal | W. Ju | Felix Eichinger | V. Nair | M. Bitzer | M. Kretzler | D. Fermin | S. Pennathur | J. Sedor | L. Subramanian | S. Steigerwalt | F. Brosius | K. Bellovich | Z. Bhat | Christine P. Limonte | D. Chang | E. Tanner | Yi Zhao | Jiahao Liu | Emily Tanner | Sylvia E. Rosas | Jennifer J. Hawkins | M. A. Vasquez | C. Limonte | Felix H. Eichinger | Yi-yang Zhao
[1] A. Garg,et al. Angiopoietins as Prognostic Markers for Future Kidney Disease and Heart Failure Events after Acute Kidney Injury , 2022, Journal of the American Society of Nephrology : JASN.
[2] N. Powe,et al. New Creatinine- and Cystatin C-Based Equations to Estimate GFR without Race. , 2021, The New England journal of medicine.
[3] G. Michailidis,et al. Circulating Free Fatty Acid and Phospholipid Signature Predicts Early Rapid Kidney Function Decline in Patients With Type 1 Diabetes , 2021, Diabetes Care.
[4] T. Libermann,et al. Circulating proteins protect against renal decline and progression to end-stage renal disease in patients with diabetes , 2021, Science Translational Medicine.
[5] A. Garg,et al. Urinary EGF and MCP-1 and risk of CKD after cardiac surgery , 2021, JCI insight.
[6] Frank Konietschke,et al. Small sample sizes: A big data problem in high-dimensional data analysis , 2020, Statistical methods in medical research.
[7] Chandra L. Theesfeld,et al. SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease , 2020, Kidney International.
[8] J. Bendell,et al. First-in-human, dose-escalation, phase 1 study of anti-angiopoietin-2 LY3127804 as monotherapy and in combination with ramucirumab in patients with advanced solid tumours , 2020, British Journal of Cancer.
[9] Majid Khan,et al. Targeting Angiopoietin in Retinal Vascular Diseases: A Literature Review and Summary of Clinical Trials Involving Faricimab , 2020, Cells.
[10] Z. Haskova,et al. Efficacy of Every Four Monthly and Quarterly Dosing of Faricimab vs Ranibizumab in Neovascular Age-Related Macular Degeneration , 2020, JAMA ophthalmology.
[11] J. Skupień,et al. A profile of multiple circulating tumor necrosis factor receptors associated with early progressive kidney decline in Type 1 Diabetes is similar to profiles in autoimmune disorders. , 2020, Kidney international.
[12] Leonard D. Goldstein,et al. Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury. , 2020, Journal of the American Society of Nephrology : JASN.
[13] A. Go,et al. Metabolomic Markers of Kidney Function Decline in Patients With Diabetes: Evidence From the Chronic Renal Insufficiency Cohort (CRIC) Study. , 2020, American journal of kidney diseases : the official journal of the National Kidney Foundation.
[14] M. Kretzler,et al. JAK-STAT Activity in Peripheral Blood Cells and Kidney Tissue in IgA Nephropathy. , 2020, Clinical journal of the American Society of Nephrology : CJASN.
[15] Yusuke Suzuki,et al. Circulating Tumor Necrosis Factor Receptors: A Potential Biomarker for the Progression of Diabetic Kidney Disease , 2020, International journal of molecular sciences.
[16] Paul J. Hoover,et al. Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker. , 2020, JCI insight.
[17] G. Michailidis,et al. Increased lipogenesis and impaired β-oxidation predict type 2 diabetic kidney disease progression in American Indians. , 2019, JCI insight.
[18] Zeguo Sun,et al. Comparison of Kidney Transcriptomic Profiles of Early and Advanced Diabetic Nephropathy Reveals Potential New Mechanisms for Disease Progression , 2019, Diabetes.
[19] Chun Zhang,et al. Angiopoietin‐Tie signaling in kidney diseases: an updated review , 2019, FEBS letters.
[20] C. Wykoff,et al. Simultaneous Inhibition of Angiopoietin-2 and Vascular Endothelial Growth Factor-A with Faricimab in Diabetic Macular Edema: BOULEVARD Phase 2 Randomized Trial. , 2019, Ophthalmology.
[21] B. Kasiske,et al. Lifetime benefits of early detection and treatment of diabetic kidney disease , 2019, PloS one.
[22] M. S. Sajib,et al. Role of Angiopoietin-2 in Vascular Physiology and Pathophysiology , 2019, Cells.
[23] Jennifer K. Sun,et al. A Signature of Circulating Inflammatory Proteins and Development of End Stage Renal Disease in Diabetes , 2019, Nature Medicine.
[24] T. Hansen,et al. Soluble Urokinase Plasminogen Activator Receptor Predicts Cardiovascular Events, Kidney Function Decline, and Mortality in Patients With Type 1 Diabetes , 2019, Diabetes Care.
[25] Christoph Hafemeister,et al. Comprehensive integration of single cell data , 2018, bioRxiv.
[26] Douglas A. Lauffenburger,et al. Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics , 2018, Cell reports.
[27] Min Chen,et al. Associations of urinary epidermal growth factor and monocyte chemotactic protein-1 with kidney involvement in patients with diabetic kidney disease. , 2018, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.
[28] B. Satirapoj,et al. Urinary epidermal growth factor, monocyte chemoattractant protein-1 or their ratio as predictors for rapid loss of renal function in type 2 diabetic patients with diabetic kidney disease , 2018, BMC Nephrology.
[29] Haojia Wu,et al. Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response. , 2018, Journal of the American Society of Nephrology : JASN.
[30] Kevin M. Wheelock,et al. Urine metabolites are associated with glomerular lesions in type 2 diabetes , 2018, Metabolomics.
[31] R. Henry,et al. Uromodulin mRNA from Urinary Extracellular Vesicles Correlate to Kidney Function Decline in Type 2 Diabetes Mellitus , 2018, American Journal of Nephrology.
[32] A. Christensson,et al. The Impact of the Glomerular Filtration Rate on the Human Plasma Proteome , 2018, Proteomics. Clinical applications.
[33] M. Kuo,et al. Angiopoietin-2, Renal Deterioration, Major Adverse Cardiovascular Events and All-Cause Mortality in Patients with Diabetic Nephropathy , 2018, Kidney and Blood Pressure Research.
[34] M. Marcovecchio,et al. Biomarkers of diabetic kidney disease , 2018, Diabetologia.
[35] Matthias Kretzler,et al. A molecular morphometric approach to diabetic kidney disease can link structure to function and outcome. , 2017, Kidney international.
[36] Henning Hermjakob,et al. The Reactome pathway knowledgebase , 2013, Nucleic Acids Res..
[37] K. Tuttle,et al. Diabetic Kidney Disease: Challenges, Progress, and Possibilities. , 2017, Clinical journal of the American Society of Nephrology : CJASN.
[38] I. D. de Boer,et al. Identification, Confirmation, and Replication of Novel Urinary MicroRNA Biomarkers in Lupus Nephritis and Diabetic Nephropathy. , 2017, Clinical Chemistry.
[39] David G. Sterling,et al. Discovery and Validation of a Six-Marker Serum Protein Signature for the Diagnosis of Active Pulmonary Tuberculosis , 2017, Journal of Clinical Microbiology.
[40] Hazem Helmy,et al. Role of Angiopoietins and Tie-2 in Diabetic Retinopathy , 2017, Electronic physician.
[41] D. Cui,et al. Interleukin-22 ameliorated renal injury and fibrosis in diabetic nephropathy through inhibition of NLRP3 inflammasome activation , 2017, Cell Death & Disease.
[42] M. Kretzler,et al. Renal biopsy-driven molecular target identification in glomerular disease , 2017, Pflügers Archiv - European Journal of Physiology.
[43] K. Alitalo,et al. Therapeutic targeting of the angiopoietin–TIE pathway , 2017, Nature Reviews Drug Discovery.
[44] L. Fried,et al. Plasma Biomarkers and Kidney Function Decline in Early and Established Diabetic Kidney Disease. , 2017, Journal of the American Society of Nephrology : JASN.
[45] H. Pavenstädt,et al. Endothelial glycocalyx breakdown is mediated by angiopoietin-2 , 2017, Cardiovascular research.
[46] J. Bonventre,et al. Circulating Modified Metabolites and a Risk of ESRD in Patients With Type 1 Diabetes and Chronic Kidney Disease , 2017, Diabetes Care.
[47] H. Parving,et al. Urinary proteomics predict onset of microalbuminuria in normoalbuminuric type 2 diabetic patients, a sub-study of the DIRECT-Protect 2 study , 2016, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.
[48] Kumar Sharma,et al. Tissue-specific metabolic reprogramming drives nutrient flux in diabetic complications. , 2016, JCI insight.
[49] H. Mischak,et al. Proteomics for prediction of disease progression and response to therapy in diabetic kidney disease , 2016, Diabetologia.
[50] Mark R Segal,et al. Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients With Stable Coronary Heart Disease. , 2016, JAMA.
[51] L. Gnudi. Angiopoietins and diabetic nephropathy , 2016, Diabetologia.
[52] Charles H. Yoon,et al. Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq , 2016, Science.
[53] A. Dreher. Modeling Survival Data Extending The Cox Model , 2016 .
[54] K. Shedden,et al. Tissue transcriptome-driven identification of epidermal growth factor as a chronic kidney disease biomarker , 2015, Science Translational Medicine.
[55] A. Woolf,et al. Vascular growth factors play critical roles in kidney glomeruli. , 2015, Clinical science.
[56] Daniel S. Himmelstein,et al. Understanding multicellular function and disease with human tissue-specific networks , 2015, Nature Genetics.
[57] H. Kwon,et al. Clinical utility of serum beta-2-microglobulin as a predictor of diabetic complications in patients with type 2 diabetes without renal impairment. , 2014, Diabetes & metabolism.
[58] A. Pandey,et al. Signaling Network Map of Endothelial TEK Tyrosine Kinase , 2014, Journal of signal transduction.
[59] E. Tsilibary,et al. Association of Angiopoietin-2 with Renal Outcome in Chronic Kidney Disease , 2014, PloS one.
[60] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[61] Luxia Zhang,et al. Chinese cohort study of chronic kidney disease: design and methods , 2014, Chinese medical journal.
[62] Yu-Ting Chang,et al. Angiopoietin-2-induced arterial stiffness in CKD. , 2014, Journal of the American Society of Nephrology : JASN.
[63] Ljubomir J. Buturovic,et al. Cross-validation pitfalls when selecting and assessing regression and classification models , 2014, Journal of Cheminformatics.
[64] Charity W. Law,et al. voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.
[65] Jean-François Dartigues,et al. Estimating and comparing time‐dependent areas under receiver operating characteristic curves for censored event times with competing risks , 2013, Statistics in medicine.
[66] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[67] J. Patel,et al. Identification of Cross-Species Shared Transcriptional Networks of Diabetic Nephropathy in Human and Mouse Glomeruli , 2012, Diabetes.
[68] L. Gnudi,et al. VEGF and angiopoietins in diabetic glomerulopathy: how far for a new treatment? , 2012, Metabolism: clinical and experimental.
[69] H. Haller,et al. Angiopoietin-2 levels predict mortality in CKD patients. , 2012, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.
[70] T. Mayadas,et al. Circulating TNF receptors 1 and 2 predict stage 3 CKD in type 1 diabetes. , 2012, Journal of the American Society of Nephrology : JASN.
[71] T. Mayadas,et al. Circulating TNF receptors 1 and 2 predict ESRD in type 2 diabetes. , 2012, Journal of the American Society of Nephrology : JASN.
[72] M. Pencina,et al. On the C‐statistics for evaluating overall adequacy of risk prediction procedures with censored survival data , 2011, Statistics in medicine.
[73] R. MacIsaac,et al. Diabetic kidney disease with and without albuminuria , 2011, Current opinion in nephrology and hypertension.
[74] Helen E. Lockstone,et al. Exon array data analysis using Affymetrix power tools and R statistical software , 2011, Briefings Bioinform..
[75] Trevor Hastie,et al. Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent. , 2011, Journal of statistical software.
[76] J. Stockman,et al. A New Equation to Estimate Glomerular Filtration Rate , 2011 .
[77] Felix Eichinger,et al. Systematic Analysis of a Novel Human Renal Glomerulus-Enriched Gene Expression Dataset , 2010, PloS one.
[78] Tracy R. Keeney,et al. Aptamer-based multiplexed proteomic technology for biomarker discovery , 2010, PloS one.
[79] Dong Sun Kim,et al. Omi/HtrA2 protease is associated with tubular cell apoptosis and fibrosis induced by unilateral ureteral obstruction. , 2010, American journal of physiology. Renal physiology.
[80] Trevor Hastie,et al. Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.
[81] C. Schmid,et al. A new equation to estimate glomerular filtration rate. , 2009, Annals of internal medicine.
[82] M. Rastaldi,et al. Enhanced Expression of Janus Kinase–Signal Transducer and Activator of Transcription Pathway Members in Human Diabetic Nephropathy , 2009, Diabetes.
[83] Kenneth H. Buetow,et al. PID: the Pathway Interaction Database , 2008, Nucleic Acids Res..
[84] M. Simons,et al. Fibroblast growth factor regulation of neovascularization , 2008, Current opinion in hematology.
[85] G. Lip,et al. Angiopoietin‐2 levels as a biomarker of cardiovascular risk in patients with hypertension , 2008, Annals of medicine.
[86] R. Bilous,et al. Podocyte-specific expression of angiopoietin-2 causes proteinuria and apoptosis of glomerular endothelia. , 2007, Journal of the American Society of Nephrology : JASN.
[87] Arndt F. Siekmann,et al. Notch Signalling and the Regulation of Angiogenesis , 2007, Cell adhesion & migration.
[88] Song-min Huang,et al. Modified glomerular filtration rate estimating equation for Chinese patients with chronic kidney disease. , 2006, Journal of the American Society of Nephrology : JASN.
[89] H. Augustin,et al. Angiopoietin-2 sensitizes endothelial cells to TNF-α and has a crucial role in the induction of inflammation , 2006, Nature Medicine.
[90] R. Myers,et al. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data , 2005, Nucleic acids research.
[91] G. Lip,et al. Plasma Angiopoietin-1, Angiopoietin-2, Angiopoietin Receptor Tie-2, and Vascular Endothelial Growth Factor Levels in Acute Coronary Syndromes , 2004, Circulation.
[92] M. Kretzler,et al. Gene expression analysis of human renal biopsies: recent developments towards molecular diagnosis of kidney disease , 2004, Current opinion in nephrology and hypertension.
[93] H. Augustin,et al. The Tie-2 ligand angiopoietin-2 is stored in and rapidly released upon stimulation from endothelial cell Weibel-Palade bodies. , 2004, Blood.
[94] G. Lip,et al. Plasma angiopoietin-1, angiopoietin-2, and angiopoietin receptor tie-2 levels in congestive heart failure. , 2004, Journal of the American College of Cardiology.
[95] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[96] A. Sanz,et al. Expression of Smac/Diablo in tubular epithelial cells and during acute renal failure. , 2003, Kidney international. Supplement.
[97] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[98] C. Cohen,et al. Quantitative gene expression analysis in renal biopsies: a novel protocol for a high-throughput multicenter application. , 2002, Kidney international.
[99] R. Tibshirani. The lasso method for variable selection in the Cox model. , 1997, Statistics in medicine.
[100] R. Kronmal,et al. The Cardiovascular Health Study: design and rationale. , 1991, Annals of epidemiology.
[101] W. N. Bailey. An expression for , 1953 .