Pediatric surgery and the human microbiome.

[1]  E. Quigley Prebiotics and probiotics: their role in the management of gastrointestinal disorders in adults. , 2012, Nutrition in clinical practice : official publication of the American Society for Parenteral and Enteral Nutrition.

[2]  D. Gevers,et al.  Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis , 2011, Inflammatory bowel diseases.

[3]  P. Ciclitira,et al.  The bacterial pathogenesis and treatment of pouchitis , 2010, Therapeutic advances in gastroenterology.

[4]  A. Hofman,et al.  Prolonged and Exclusive Breastfeeding Reduces the Risk of Infectious Diseases in Infancy , 2010, Pediatrics.

[5]  Matthew W. Johnson,et al.  The Bacteriology of Pouchitis: A Molecular Phylogenetic Analysis Using 16S rRNA Gene Cloning and Sequencing , 2010, Annals of surgery.

[6]  R. Xavier,et al.  Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine , 2010, Cell.

[7]  G. Di Nardo,et al.  A distinctive 'microbial signature' in celiac pediatric patients , 2010, BMC Microbiology.

[8]  Forest Rohwer,et al.  Viruses in the fecal microbiota of monozygotic twins and their mothers , 2010, Nature.

[9]  M. Hornef,et al.  Cesarean Delivery Is Associated With Celiac Disease but Not Inflammatory Bowel Disease in Children , 2010, Pediatrics.

[10]  J. Derisi,et al.  Achalasia and Viral Infection: New Insights from Veterinary Medicine , 2010, Science Translational Medicine.

[11]  U. Das,et al.  Obesity: genes, brain, gut, and environment. , 2010, Nutrition.

[12]  Bee Wah Lee,et al.  Comparative Analysis of Fecal Microbiota in Infants with and without Eczema , 2010, PloS one.

[13]  P. Bork,et al.  A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.

[14]  E. Quigley Prebiotics and probiotics; modifying and mining the microbiota. , 2010, Pharmacological research.

[15]  S. Dowd,et al.  Stressor Exposure Disrupts Commensal Microbial Populations in the Intestines and Leads to Increased Colonization by Citrobacter rodentium , 2010, Infection and Immunity.

[16]  A. Walker Breast milk as the gold standard for protective nutrients. , 2010, The Journal of pediatrics.

[17]  N. Stenseth,et al.  Convergent temporal dynamics of the human infant gut microbiota , 2010, The ISME Journal.

[18]  Lior Pachter,et al.  Disordered Microbial Communities in Asthmatic Airways , 2010, PloS one.

[19]  S. Guandalini Update on the role of probiotics in the therapy of pediatric inflammatory bowel disease , 2010, Expert review of clinical immunology.

[20]  Lu Wang,et al.  The NIH Human Microbiome Project. , 2009, Genome research.

[21]  S. Ikramuddin,et al.  The surgical approach to management of pediatric obesity: When to refer and what to expect , 2009, Reviews in Endocrine and Metabolic Disorders.

[22]  B. Finlay,et al.  The role of the intestinal microbiota in enteric infection , 2009, The Journal of physiology.

[23]  R. Knight,et al.  Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. , 2009, Genome research.

[24]  Chaochun Wei,et al.  More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body , 2009, PloS one.

[25]  R. Sartor,et al.  Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases , 2009, Current opinion in infectious diseases.

[26]  S. Cucchiara,et al.  Dominant genotypes in mucosa‐associated Escherichia coli strains from pediatric patients with inflammatory bowel disease , 2009, Inflammatory bowel diseases.

[27]  Patrice D Cani,et al.  The role of the gut microbiota in energy metabolism and metabolic disease. , 2009, Current pharmaceutical design.

[28]  Bernard Henrissat,et al.  Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla , 2009, Proceedings of the National Academy of Sciences.

[29]  D. Antonopoulos,et al.  16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis , 2009, The ISME Journal.

[30]  M. Crowell,et al.  Human gut microbiota in obesity and after gastric bypass , 2009, Proceedings of the National Academy of Sciences.

[31]  K. Slim,et al.  Updated Systematic Review and Meta-Analysis of Randomized Clinical Trials on the Role of Mechanical Bowel Preparation Before Colorectal Surgery , 2009, Annals of surgery.

[32]  James R. Cole,et al.  The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..

[33]  Les Dethlefsen,et al.  The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.

[34]  J. Doré,et al.  Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.

[35]  E. Zoetendal,et al.  High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota , 2008, Gut.

[36]  J. Kelsen,et al.  Inflammatory bowel disease: the difference between children and adults. , 2008, Inflammatory bowel diseases.

[37]  E. Mardis Next-generation DNA sequencing methods. , 2008, Annual review of genomics and human genetics.

[38]  A. Vestri,et al.  Probiotic administration in patients with ileal pouch–anal anastomosis for ulcerative colitis is associated with expansion of mucosal regulatory cells , 2008, Inflammatory bowel diseases.

[39]  Rick L. Stevens,et al.  Functional metagenomic profiling of nine biomes , 2008, Nature.

[40]  J. Wohlfahrt,et al.  Caesarean delivery and risk of atopy and allergic disesase: meta‐analyses , 2008, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[41]  Mario Vaneechoutte,et al.  Active Crohn's disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora , 2008, Inflammatory bowel diseases.

[42]  R Balfour Sartor,et al.  Microbial influences in inflammatory bowel diseases. , 2008, Gastroenterology.

[43]  N. Barnich,et al.  Role of bacteria in the etiopathogenesis of inflammatory bowel disease. , 2007, World journal of gastroenterology.

[44]  A. Baltasar,et al.  Critical assessment of the current guidelines for the management and treatment of morbidly obese patients , 2007, Journal of endocrinological investigation.

[45]  D. Hackam,et al.  A Critical Role for TLR4 in the Pathogenesis of Necrotizing Enterocolitis by Modulating Intestinal Injury and Repair1 , 2007, The Journal of Immunology.

[46]  N. Pace,et al.  Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases , 2007, Proceedings of the National Academy of Sciences.

[47]  J. Carvalheira,et al.  Loss-of-Function Mutation in Toll-Like Receptor 4 Prevents Diet-Induced Obesity and Insulin Resistance , 2007, Diabetes.

[48]  Daniel B. DiGiulio,et al.  Development of the Human Infant Intestinal Microbiota , 2007, PLoS biology.

[49]  R. Schanler,et al.  Human milk and clinical outcomes in VLBW infants: how compelling is the evidence of benefit? , 2007, Seminars in perinatology.

[50]  P. Wludyka,et al.  Neonatal gut barrier and multiple organ failure: role of endotoxin and proinflammatory cytokines in sepsis and necrotizing enterocolitis. , 2007, Journal of pediatric surgery.

[51]  Jeffrey I. Gordon,et al.  Mechanisms underlying the resistance to diet-induced obesity in germ-free mice , 2007, Proceedings of the National Academy of Sciences.

[52]  D. Relman,et al.  The role of microbes in Crohn's disease. , 2007, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[53]  N. Barnich,et al.  Adherent-invasive Escherichia coli and Crohn's disease , 2007, Current opinion in gastroenterology.

[54]  P. Turnbaugh,et al.  Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.

[55]  E. Mardis,et al.  An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.

[56]  M. Behr,et al.  Mycobacteria in Crohn's disease: a persistent hypothesis. , 2006, Inflammatory bowel diseases.

[57]  R. Thomson,,et al.  The Roles of Bacteria and TLR4 in Rat and Murine Models of Necrotizing Enterocolitis1 , 2006, The Journal of Immunology.

[58]  P. A. van den Brandt,et al.  Factors Influencing the Composition of the Intestinal Microbiota in Early Infancy , 2006, Pediatrics.

[59]  F. Shanahan,et al.  The gut flora as a forgotten organ , 2006, EMBO reports.

[60]  M. Pop,et al.  Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.

[61]  K. Flegal,et al.  Prevalence of overweight and obesity in the United States, 1999-2004. , 2006, JAMA.

[62]  R. Ley,et al.  Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine , 2006, Cell.

[63]  Cynthia L Sears,et al.  A dynamic partnership: celebrating our gut flora. , 2005, Anaerobe.

[64]  G. Macfarlane,et al.  Characterisation of intestinal bacteria in infant stools using real-time PCR and northern hybridisation analyses. , 2005, FEMS microbiology ecology.

[65]  R. Sartor,et al.  Does Mycobacterium avium subspecies paratuberculosis cause Crohn’s disease? , 2005, Gut.

[66]  T. Giese,et al.  High prevalence of Mycobacterium avium subspecies paratuberculosis IS900 DNA in gut tissues from individuals with Crohn’s disease , 2005, Gut.

[67]  C. Leys,et al.  Elective intestinal operations in infants and children without mechanical bowel preparation: a pilot study. , 2005, Journal of pediatric surgery.

[68]  J. Penders,et al.  Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. , 2005, FEMS microbiology letters.

[69]  A. Day,et al.  Use of complementary and alternative medicines by children and adolescents with inflammatory bowel disease , 2004, Journal of paediatrics and child health.

[70]  J. Handelsman,et al.  Status of the Microbial Census , 2004, Microbiology and Molecular Biology Reviews.

[71]  Ting Wang,et al.  The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[72]  J. Galmiche,et al.  Early Intestinal Bacterial Colonization and Necrotizing Enterocolitis in Premature Infants: The Putative Role of Clostridium , 2004, Pediatric Research.

[73]  L. Cordero,et al.  Enteric gram-negative bacilli bloodstream infections: 17 years' experience in a neonatal intensive care unit. , 2004, American journal of infection control.

[74]  J. Gordon,et al.  Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[75]  H. Wichmann,et al.  Mode of delivery and development of atopic disease during the first 2 years of life , 2004, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

[76]  M. Kamm,et al.  Once daily high dose probiotic therapy (VSL#3) for maintaining remission in recurrent or refractory pouchitis , 2003, Gut.

[77]  M. Blaut,et al.  Development of the Intestinal Bacterial Composition in Hospitalized Preterm Infants in Comparison with Breast-Fed, Full-Term Infants , 2003, Pediatric Research.

[78]  M. Lyte,et al.  Catecholamines Modulate Escherichia coli O157:H7 Adherence to Murine Cecal Mucosa , 2003, Shock.

[79]  Lynn K. Carmichael,et al.  A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis , 2003, Science.

[80]  O. Zmora,et al.  Colon and Rectal Surgery Without Mechanical Bowel Preparation: A Randomized Prospective Trial , 2003, Annals of surgery.

[81]  E. Claud,et al.  Hypothesis: inappropriate colonization of the premature intestine can cause neonatal necrotizing enterocolitis , 2001, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[82]  S. Lana,et al.  Nosocomial necrotising enterocolitis outbreaks: epidemiology and control measures , 2001, European Journal of Pediatrics.

[83]  J. Gordon,et al.  Commensal Host-Bacterial Relationships in the Gut , 2001, Science.

[84]  J. Gordon,et al.  Molecular analysis of commensal host-microbial relationships in the intestine. , 2001, Science.

[85]  C. Woese Interpreting the universal phylogenetic tree. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[86]  P. Brigidi,et al.  Prophylaxis of pouchitis onset with probiotic therapy: A double‐blind, placebo‐controlled trial , 2000, Gastroenterology.

[87]  R. Mackie,et al.  Developmental microbial ecology of the neonatal gastrointestinal tract. , 1999, The American journal of clinical nutrition.

[88]  E. Shlasko,et al.  Pneumatosis intestinalis and portal vein gas after blunt abdominal trauma. , 1998, Journal of pediatric surgery.

[89]  M. Millar,et al.  Application of 16S rRNA gene PCR to study bowel flora of preterm infants with and without necrotizing enterocolitis , 1996, Journal of clinical microbiology.

[90]  J. Gordon,et al.  A Model of Host-Microbial Interactions in an Open Mammalian Ecosystem , 1996, Science.

[91]  C. Woese Microbiology in transition. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[92]  S. Palmer,et al.  Outcome of neonatal necrotising enterocolitis: results of the BAPM/CDSC surveillance study, 1981-84. , 1989, Archives of disease in childhood.

[93]  R. Chiodini,et al.  Possible role of mycobacteria in inflammatory bowel disease , 1984, Digestive Diseases and Sciences.

[94]  J. Neu,et al.  Succession of microbial consortia in the developing infant gut microbiome , 2011 .

[95]  J. Neu,et al.  Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns , 2011 .

[96]  J. Neu,et al.  Intestinal Microbial Ecology in Premature Infants Assessed with Non–Culture-Based Techniques , 2010 .

[97]  J. Neu Redefining the Role of Intestinal Microbes in the Pathogenesis of Necrotizing Enterocolitis , 2010 .

[98]  R. Baldassano,et al.  Novel therapeutic options in the inflammatory bowel disease world. , 2008, Digestive and liver disease : official journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver.

[99]  C. Hoyen Factors Influencing the Composition of the Intestinal Microbiota in Early Infancy , 2007 .

[100]  Community-associated methicillin-resistant Staphylococcus aureus infection among healthy newborns--Chicago and Los Angeles County, 2004. , 2006, MMWR. Morbidity and mortality weekly report.

[101]  Manfred Dietel,et al.  Mucosal flora in inflammatory bowel disease. , 2002, Gastroenterology.

[102]  T. Bayless,et al.  Inflammatory bowel disease [3] , 1992 .

[103]  A. Kosloske,et al.  Comparative effects of ischemia, bacteria, and substrate on the pathogenesis of intestinal necrosis. , 1986, Journal of pediatric surgery.

[104]  H. Ford,et al.  Moving Forward , 1930 .