A catalog of microbial genes from the bovine rumen reveals the determinants of herbivory
暂无分享,去创建一个
J. Estellé | Junhua Li | Huanming Yang | Jian Wang | K. Kristiansen | S. Ehrlich | Huanzi Zhong | Bing Chen | L. Madsen | Weineng Chen | B. Henrissat | Xun Xu | V. Lombard | G. Potocki-Veronese | Y. Ramayo-Caldas | D. Morgavi | E. Maguin | N. Terrapon | Shanmei Tang | M. Popova | Jiyang Li | Cécile Martin | Jing Guo | Ziyi Yang | Hui Zhang | Fang Li
[1] C. Creevey,et al. Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes. , 2018, Environmental pollution.
[2] Georgios A. Pavlopoulos,et al. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection , 2018, Nature Biotechnology.
[3] R. Dewhurst,et al. Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen , 2018, Nature Communications.
[4] R. Dewhurst,et al. The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle , 2017, Microbiome.
[5] Jesse R. Zaneveld,et al. Stress and stability: applying the Anna Karenina principle to animal microbiomes , 2017, Nature Microbiology.
[6] Natalia N. Ivanova,et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea , 2017, Nature Biotechnology.
[7] Anders F. Andersson,et al. Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation , 2017, The ISME Journal.
[8] J. Scaria,et al. Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle , 2017, Scientific Reports.
[9] O. Denis,et al. Bacteria from Animals as a Pool of Antimicrobial Resistance Genes , 2017, Antibiotics.
[10] B. Henrissat,et al. Complex pectin metabolism by gut bacteria reveals novel catalytic functions , 2017, Nature.
[11] Xun Xu,et al. A reference gene catalogue of the pig gut microbiome , 2016, Nature Microbiology.
[12] W. Zollitsch,et al. An approach to including protein quality when assessing the net contribution of livestock to human food supply. , 2016, Animal : an international journal of animal bioscience.
[13] J. Liao,et al. Fuelling the future: microbial engineering for the production of sustainable biofuels , 2016, Nature Reviews Microbiology.
[14] Christine G. Elsik,et al. Bovine Genome Database: new tools for gleaning function from the Bos taurus genome , 2015, Nucleic Acids Res..
[15] Mick Watson,et al. The rumen microbial metagenome associated with high methane production in cattle , 2015, BMC Genomics.
[16] P. B. Pope,et al. Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range , 2015, Scientific Reports.
[17] B. Henrissat,et al. Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii , 2015, mBio.
[18] T. R. Licht,et al. A catalog of the mouse gut metagenome , 2015, Nature Biotechnology.
[19] Connor T. Skennerton,et al. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.
[20] V. Tremaroli,et al. Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life. , 2015, Cell host & microbe.
[21] B. White,et al. Biomass utilization by gut microbiomes. , 2014, Annual review of microbiology.
[22] Jens Roat Kultima,et al. An integrated catalog of reference genes in the human gut microbiome , 2014, Nature Biotechnology.
[23] H. Aiking. Protein production: planet, profit, plus people? , 2014, The American journal of clinical nutrition.
[24] Jennifer Jie Xu,et al. Knowledge Discovery and Data Mining , 2014, Computing Handbook, 3rd ed..
[25] Pedro M. Coutinho,et al. The carbohydrate-active enzymes database (CAZy) in 2013 , 2013, Nucleic Acids Res..
[26] M. Pop,et al. Robust methods for differential abundance analysis in marker gene surveys , 2013, Nature Methods.
[27] Vittorio Dell’Orto,et al. Fungal populations and mycotoxins in silages: From occurrence to analysis , 2013 .
[28] Bernard Henrissat,et al. The abundance and variety of carbohydrate-active enzymes in the human gut microbiota , 2013, Nature Reviews Microbiology.
[29] P. Janssen,et al. Rumen microbial (meta)genomics and its application to ruminant production. , 2013, Animal : an international journal of animal bioscience.
[30] Peer Bork,et al. MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit , 2012, PloS one.
[31] Qiang Feng,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.
[32] W. Wade,et al. Selective removal of human DNA from metagenomic DNA samples extracted from dental plaque , 2011, Journal of basic microbiology.
[33] J. Stoye,et al. Taxonomic classification of metagenomic shotgun sequences with CARMA3 , 2011, Nucleic acids research.
[34] Peer Bork,et al. iPath2.0: interactive pathway explorer , 2011, Nucleic Acids Res..
[35] Natalia N. Ivanova,et al. The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist , 2011, PloS one.
[36] G. Harhay,et al. Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach. , 2011, Journal of microbiological methods.
[37] S. Tringe,et al. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen , 2011, Science.
[38] Robert W. Li,et al. Genome wide analysis of the bovine mucin genes and their gastrointestinal transcription profile , 2011, BMC Genomics.
[39] Yan Li,et al. Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes , 2011, BMC Genomics.
[40] U. Thrane,et al. Dynamics in the microbiology of maize silage during whole‐season storage , 2010, Journal of applied microbiology.
[41] M. Borodovsky,et al. Ab initio gene identification in metagenomic sequences , 2010, Nucleic acids research.
[42] Bernard Henrissat,et al. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins , 2010, Proceedings of the National Academy of Sciences.
[43] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[44] P. Smith,et al. Mitigating climate change: the role of domestic livestock. , 2010, Animal : an international journal of animal bioscience.
[45] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[46] P. Weimer,et al. Lessons from the cow: what the ruminant animal can teach us about consolidated bioprocessing of cellulosic biomass. , 2009, Bioresource technology.
[47] K. Nelson,et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases , 2009, Proceedings of the National Academy of Sciences.
[48] Meriem El Karoui,et al. A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera , 2008, Journal of bacteriology.
[49] Mihai Pop,et al. ARDB—Antibiotic Resistance Genes Database , 2008, Nucleic Acids Res..
[50] Raphael Lamed,et al. From cellulosomes to cellulosomics. , 2008, Chemical record.
[51] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[52] Zhongtang Yu,et al. Improved extraction of PCR-quality community DNA from digesta and fecal samples. , 2004, BioTechniques.
[53] R. Gianello,et al. Contents of sugars in leaves of drying desiccation tolerant flowering plants, particularly grasses , 1998, Plant Growth Regulation.
[54] S. Smeekens,et al. Fructan: more than a reserve carbohydrate? , 1999, Plant physiology.
[55] Hans-Peter Kriegel,et al. A Density-Based Algorithm for Discovering Clusters in Large Spatial Databases with Noise , 1996, KDD.
[56] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[57] R. Shepard. The analysis of proximities: Multidimensional scaling with an unknown distance function. II , 1962 .
[58] R. Shepard. The analysis of proximities: Multidimensional scaling with an unknown distance function. I. , 1962 .
[59] J. T. Curtis,et al. An Ordination of the Upland Forest Communities of Southern Wisconsin , 1957 .