Coupled Finite Element–Agent-Based Models for the Simulation of Vascular Growth and Remodeling

Abstract Agent-based models (ABMs) are increasingly used to simulate biological systems, for example, to model the growth of cells in various tissues. Individual agents are defined such that they obey simple rules governed by their internal state and external environment. An ABM can then combine the individual behavior of numerous agents, and the interactions between agents, to predict the collective behavior of the agents in a model system, such as a tissue or organ. From this, complex behavior can be simulated and stochastic methods employed to predict emergent behavior. In this chapter, an ABM coupled with a finite element (FE) model is presented and used to predict in-stent restenosis in an artery wall after stent implantation. The ABM features two cell types: vascular smooth muscle cells and endothelial cells whose behaviors are interdependent. The rule set for cell–cell interactions is presented, including derivation from experimental and clinical data in the literature, along with details of the implementation methods. Cell behavior is principally governed by the mechanical environment in the model whereby a nonlinear FE model of stent deployment is coupled to the domain of the ABM. Challenges with model calibration and validation are discussed, along with potential future applications of this modeling approach to areas such as vascular tissue engineering and remodeling.

[1]  Caitríona Lally,et al.  An investigation of damage mechanisms in mechanobiological models of in-stent restenosis , 2017, J. Comput. Sci..

[2]  Shayn M. Peirce,et al.  Multi-cell Agent-based Simulation of the Microvasculature to Study the Dynamics of Circulating Inflammatory Cell Trafficking , 2007, Annals of Biomedical Engineering.

[3]  Avner Friedman,et al.  A mathematical model of venous neointimal hyperplasia formation , 2008, Theoretical Biology and Medical Modelling.

[4]  R. Ogden,et al.  A New Constitutive Framework for Arterial Wall Mechanics and a Comparative Study of Material Models , 2000 .

[5]  C. M. Amatruda,et al.  Contribution of Mechanical and Fluid Stresses to the Magnitude of In-stent Restenosis at the Level of Individual Stent Struts , 2014 .

[6]  Jay D. Humphrey,et al.  Ensuring Congruency in Multiscale Modeling: Towards Linking Agent Based and Continuum Biomechanical Models of Arterial Adaptation , 2011, Annals of Biomedical Engineering.

[7]  J D Humphrey,et al.  A theoretical model of enlarging intracranial fusiform aneurysms. , 2006, Journal of biomechanical engineering.

[8]  Wei Sun,et al.  Finite element implementation of a generalized Fung-elastic constitutive model for planar soft tissues , 2005, Biomechanics and modeling in mechanobiology.

[9]  Patrick J Prendergast,et al.  In silico prediction of the mechanobiological response of arterial tissue: application to angioplasty and stenting. , 2011, Journal of biomechanical engineering.

[10]  Jay D. Humphrey,et al.  Toward a Multi-Scale Computational Model of Arterial Adaptation in Hypertension: Verification of a Multi-Cell Agent Based Model , 2011, Front. Physio..

[11]  P. J. Prendergast,et al.  Computational simulation methodologies for mechanobiological modelling: a cell-centred approach to neointima development in stents , 2010, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[12]  J. Deux,et al.  Differential Expression of Matrix Metalloproteinases After Stent Implantation and Balloon Angioplasty in the Hypercholesterolemic Rabbit , 2001, Circulation.

[13]  Roeland M. H. Merks,et al.  An in silico study on the role of smooth muscle cell migration in neointimal formation after coronary stenting , 2015, Journal of The Royal Society Interface.

[14]  Vittoria Flamini,et al.  Fibre orientation of fresh and frozen porcine aorta determined non-invasively using diffusion tensor imaging. , 2013, Medical engineering & physics.

[15]  F. Auricchio,et al.  Carotid artery stenting simulation: from patient-specific images to finite element analysis. , 2011, Medical engineering & physics.

[16]  A Rachev,et al.  A model of stress-induced geometrical remodeling of vessel segments adjacent to stents and artery/graft anastomoses. , 2000, Journal of theoretical biology.

[17]  E. Edelman,et al.  Endogenous cell seeding. Remnant endothelium after stenting enhances vascular repair. , 1996, Circulation.

[18]  P. Prendergast,et al.  Cardiovascular stent design and vessel stresses: a finite element analysis. , 2005, Journal of biomechanics.

[19]  D. Kelly,et al.  3D Bioprinting of Developmentally Inspired Templates for Whole Bone Organ Engineering , 2016, Advanced healthcare materials.

[20]  G. Holzapfel,et al.  A structural model for the viscoelastic behavior of arterial walls: Continuum formulation and finite element analysis , 2002 .

[21]  Caitríona Lally,et al.  Simulation of a balloon expandable stent in a realistic coronary artery-Determination of the optimum modelling strategy. , 2010, Journal of biomechanics.

[22]  Alfons G. Hoekstra,et al.  Toward a Complex Automata Formalism for Multi-Scale Modeling , 2007 .

[23]  Alfons G. Hoekstra,et al.  Multi-scale Modeling with Cellular Automata: The Complex Automata Approach , 2008, ACRI.

[24]  Daniel Balzani,et al.  Constitutive framework for the modeling of damage in collagenous soft tissues with application to arterial walls , 2012 .

[25]  L. Taber Biomechanics of Growth, Remodeling, and Morphogenesis , 1995 .

[26]  Gerhard Sommer,et al.  Determination of layer-specific mechanical properties of human coronary arteries with nonatherosclerotic intimal thickening and related constitutive modeling. , 2005, American journal of physiology. Heart and circulatory physiology.

[27]  Caitríona Lally,et al.  A multiscale mechanobiological modelling framework using agent-based models and finite element analysis: application to vascular tissue engineering , 2012, Biomechanics and modeling in mechanobiology.

[28]  R. Ogden,et al.  A robust anisotropic hyperelastic formulation for the modelling of soft tissue. , 2014, Journal of the mechanical behavior of biomedical materials.

[29]  Gerhard A Holzapfel,et al.  Changes in the mechanical environment of stenotic arteries during interaction with stents: computational assessment of parametric stent designs. , 2005, Journal of biomechanical engineering.

[30]  Z. Galis,et al.  This Review Is Part of a Thematic Series on Matrix Metalloproteinases, Which Includes the following Articles: Matrix Metalloproteinase Inhibition after Myocardial Infarction: a New Approach to Prevent Heart Failure? Matrix Metalloproteinases in Vascular Remodeling and Atherogenesis: the Good, the Ba , 2022 .

[31]  A. Ghosh,et al.  Computational modeling of fracture in concrete using a meshfree meso-macro-multiscale method , 2013 .

[32]  Patrick J. Prendergast,et al.  Application of a mechanobiological simulation technique to stents used clinically. , 2013, Journal of biomechanics.

[33]  R H Smallwood,et al.  The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[34]  P. Prendergast,et al.  Simulation of In-stent Restenosis for the Design of Cardiovascular Stents , 2006 .

[35]  Jeffrey W Holmes,et al.  Coupled agent-based and finite-element models for predicting scar structure following myocardial infarction. , 2014, Progress in biophysics and molecular biology.

[36]  H. Van Oosterwyck,et al.  A multi-scale mechanobiological model of in-stent restenosis: deciphering the role of matrix metalloproteinase and extracellular matrix changes , 2014, Computer methods in biomechanics and biomedical engineering.

[37]  J. P. McGarry,et al.  On the Compressibility of Arterial Tissue , 2015, Annals of Biomedical Engineering.

[38]  N. Stergiopulos,et al.  A structure-based model of arterial remodeling in response to sustained hypertension. , 2009, Journal of biomechanical engineering.

[39]  Caitríona Lally,et al.  Determination of the influence of stent strut thickness using the finite element method: implications for vascular injury and in-stent restenosis , 2009, Medical & Biological Engineering & Computing.

[40]  J D Humphrey,et al.  Evaluation of fundamental hypotheses underlying constrained mixture models of arterial growth and remodelling , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[41]  Pavel S. Zun,et al.  Towards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[42]  Patrick J. Prendergast,et al.  A Mechanobiological Model for Tissue Differentiation that Includes Angiogenesis: A Lattice-Based Modeling Approach , 2008, Annals of Biomedical Engineering.

[43]  Caitríona Lally,et al.  A remodelling metric for angular fibre distributions and its application to diseased carotid bifurcations , 2011, Biomechanics and Modeling in Mechanobiology.

[44]  Peter J. Bentley,et al.  Designing Biological Computers: Systemic Computation and Sensor Networks , 2008, BIOWIRE.

[45]  Jay D Humphrey,et al.  Growth and remodeling in a thick-walled artery model: effects of spatial variations in wall constituents , 2008, Biomechanics and modeling in mechanobiology.

[46]  T. Skalak,et al.  The FASEB Journal express article 10.1096/fj.03-0933fje. Published online February 6, 2004. Multicellular simulation predicts microvascular patterning and in silico tissue assembly , 2022 .

[47]  Marco Viceconti,et al.  In silico clinical trials: how computer simulation will transform the biomedical industry , 2016 .

[48]  Y. Fung,et al.  Pseudoelasticity of arteries and the choice of its mathematical expression. , 1979, The American journal of physiology.

[49]  E Kuhl,et al.  Computational modeling of arterial wall growth , 2007, Biomechanics and modeling in mechanobiology.

[50]  Patrick J. Prendergast,et al.  Predictive Modelling in Mechanobiology: Combining Algorithms for Cell Activities in Response to Physical Stimuli Using a Lattice-Modelling Approach , 2010 .

[51]  Jason A. Papin,et al.  Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations , 2006, IBM J. Res. Dev..

[52]  L. Taber A model for aortic growth based on fluid shear and fiber stresses. , 1998, Journal of biomechanical engineering.

[53]  Mitsuru Akashi,et al.  Quantitative 3D analysis of nitric oxide diffusion in a 3D artery model using sensor particles. , 2011, Angewandte Chemie.