Identification of Novel and Conserved miRNAs in Leaves of In vitro Grown Citrus reticulata “Lugan” Plantlets by Solexa Sequencing
暂无分享,去创建一个
Z. Lai | Yuling Lin | Min Kyaw Thu | Rongfang Guo | Xiaodong Chen | Yuling Lin | Xuhan Xu | Zhongxiong Lai | Rongfang Guo | Xiaodong Chen | Xuhan Xu
[1] Michelle T. Juarez,et al. microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity , 2004, Nature.
[2] Meng Wang,et al. PsRobot: a web-based plant small RNA meta-analysis toolbox , 2012, Nucleic Acids Res..
[3] Yijun Qi,et al. DNA methylation mediated by a microRNA pathway. , 2010, Molecular cell.
[4] V. Moulton,et al. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. , 2008, Genome research.
[5] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[6] Xuemei Chen,et al. microRNA biogenesis and function in plants , 2005, FEBS letters.
[7] Nils Blüthgen,et al. Targetfinder.org: a resource for systematic discovery of transcription factor target genes , 2010, Nucleic Acids Res..
[8] Robert D. Finn,et al. Rfam 12.0: updates to the RNA families database , 2014, Nucleic Acids Res..
[9] D. Bartel,et al. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. , 2004, Molecular cell.
[10] Hideki Makishima,et al. [Deep sequencing]. , 2013, [Rinsho ketsueki] The Japanese journal of clinical hematology.
[11] Tai Wang,et al. Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa , 2011, Genome Biology.
[12] R. Sunkar,et al. Posttranscriptional Induction of Two Cu/Zn Superoxide Dismutase Genes in Arabidopsis Is Mediated by Downregulation of miR398 and Important for Oxidative Stress Tolerance[W] , 2006, The Plant Cell Online.
[13] S. Hake,et al. Big impacts by small RNAs in plant development. , 2009, Current opinion in plant biology.
[14] C. Llave,et al. High-Throughput Sequencing of RNA Silencing-Associated Small RNAs in Olive (Olea europaea L.) , 2011, PloS one.
[15] Seon-Ju Shin,et al. miR171 Family Members are Involved in Drought Response in Solanum tuberosum , 2011, Journal of Plant Biology.
[16] E. Benková,et al. The Transcription Factors BEL1 and SPL Are Required for Cytokinin and Auxin Signaling During Ovule Development in Arabidopsis[W] , 2012, Plant Cell.
[17] Chen Wang,et al. Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata) , 2010, BMC Genomics.
[18] R. Sunkar,et al. Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis , 2009, Planta.
[19] Xiu-Jie Wang,et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids , 2009, Proceedings of the National Academy of Sciences.
[20] N. Chua,et al. The role of miR156/SPLs modules in Arabidopsis lateral root development. , 2015, The Plant journal : for cell and molecular biology.
[21] N. Ye,et al. Identification of miRNA from Porphyra yezoensis by High-Throughput Sequencing and Bioinformatics Analysis , 2010, PloS one.
[22] Z. Lai,et al. Comparative Analysis Reveals Dynamic Changes in miRNAs and Their Targets and Expression during Somatic Embryogenesis in Longan (Dimocarpus longan Lour.) , 2013, PloS one.
[23] Qian Luo,et al. MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis. , 2010, Molecular plant.
[24] D. Bartel,et al. Criteria for Annotation of Plant MicroRNAs , 2008, The Plant Cell Online.
[25] W. Karłowski,et al. Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses , 2015, Front. Plant Sci..
[26] V. Moulton,et al. High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families , 2008, BMC Genomics.
[27] Yingyin Yao,et al. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.) , 2007, Genome Biology.
[28] Wen-Hsiung Li,et al. Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing1[W][OA] , 2009, Plant Physiology.
[29] Heinz Saedler,et al. The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis , 2008, Plant Molecular Biology.
[30] Qiang Xu,et al. Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange , 2011, Planta.
[31] Wen-Wu Guo,et al. Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type , 2010, BMC Genomics.
[32] H. Liu,et al. Development-associated microRNAs in grains of wheat (Triticum aestivumL.) , 2013, BMC Plant Biology.
[33] Z. Yin,et al. Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum). , 2010, Genetics and molecular research : GMR.
[34] K. Chong,et al. Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response , 2009, BMC Genomics.
[35] Li Li,et al. Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange , 2014, BMC Genomics.
[36] Ryan D. Morin,et al. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. , 2008, Genome research.
[37] D. Bartel,et al. MicroRNAS and their regulatory roles in plants. , 2006, Annual review of plant biology.
[38] Ruiqiang Li,et al. SOAP: short oligonucleotide alignment program , 2008, Bioinform..
[39] Rui Chen,et al. Identification of microRNAs in wild soybean (Glycine soja). , 2009, Journal of integrative plant biology.
[40] Naama Menda,et al. Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato , 2007, Nature Genetics.
[41] Ramanjulu Sunkar,et al. In silico identification of conserved microRNAs in large number of diverse plant species , 2008, BMC Plant Biology.
[42] Shuhong Zhao,et al. Discovery of Porcine microRNAs in Multiple Tissues by a Solexa Deep Sequencing Approach , 2011, PloS one.
[43] Claude W dePamphilis,et al. Conservation and divergence of microRNAs in Populus , 2007, BMC Genomics.
[44] Qiang Xu,et al. Genomewide analysis of small RNAs in nonembryogenic and embryogenic tissues of citrus: microRNA- and siRNA-mediated transcript cleavage involved in somatic embryogenesis. , 2015, Plant biotechnology journal.
[45] Guiling Sun. MicroRNAs and their diverse functions in plants , 2011, Plant Molecular Biology.
[46] J. Reed,et al. Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction , 2006, Development.
[47] S. Smita,et al. Identification of novel drought-responsive microRNAs and trans-acting siRNAs from Sorghum bicolor (L.) Moench by high-throughput sequencing analysis , 2015, Front. Plant Sci..
[48] E. Miska,et al. MicroRNA functions in animal development and human disease , 2005, Development.
[49] Detlef Weigel,et al. Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana[W][OA] , 2008, The Plant Cell Online.
[50] Y. Kamiya,et al. IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress[W] , 2012, Plant Cell.
[51] Hirokazu Tsukaya,et al. Mechanism of leaf-shape determination. , 2006, Annual review of plant biology.
[52] Huaihua Liu,et al. Identification and characterization of maize microRNAs involved in the very early stage of seed germination , 2011, BMC Genomics.
[53] Han Xia,et al. Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.) , 2010, BMC Plant Biology.
[54] Identification and functional analysis of novel and conserved microRNAs in tomato , 2014, Molecular Biology Reports.