Evolution of coding and non-coding genes in HOX clusters of a marsupial
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R. O’Neill | Zhi-Ping Feng | A. Papenfuss | G. Shaw | A. Pask | Hongshi Yu | M. Renfree | D. Carone | James Lindsay | S. Frankenberg | Yanqiu Hu | Dawn M. Carone
[1] K. Chew. The regulation and development of the marsupial appendage , 2013 .
[2] R. O’Neill,et al. Evolution of coding and non-coding genes in HOX clusters of a marsupial , 2012, BMC Genomics.
[3] S. Searle,et al. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development , 2013, Genome Biology.
[4] G. Shaw,et al. HOXA13 and HOXD13 expression during development of the syndactylous digits in the marsupial Macropus eugenii , 2012, BMC Developmental Biology.
[5] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[6] Zhe‐Xi Luo,et al. A Jurassic eutherian mammal and divergence of marsupials and placentals , 2011, Nature.
[7] Patrick Schorderet,et al. Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human , 2011, PLoS genetics.
[8] Ana Kozomara,et al. miRBase: integrating microRNA annotation and deep-sequencing data , 2010, Nucleic Acids Res..
[9] Johan T den Dunnen,et al. New methods for next generation sequencing based microRNA expression profiling , 2010, BMC Genomics.
[10] A. Bosserhoff,et al. MicroRNA miR-196a is a central regulator of HOX-B7 and BMP4 expression in malignant melanoma , 2010, Cellular and Molecular Life Sciences.
[11] Saraswati Sukumar,et al. The Hox genes and their roles in oncogenesis , 2010, Nature Reviews Cancer.
[12] Howard Y. Chang,et al. Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis , 2010, Nature.
[13] Sonja J. Prohaska,et al. Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome , 2010, Proceedings of the National Academy of Sciences.
[14] A. Satoh,et al. Analysis of hoxa11 and hoxa13 expression during patternless limb regeneration in Xenopus. , 2010, Developmental biology.
[15] O. Gascuel,et al. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. , 2010, Molecular biology and evolution.
[16] Morgane Thomas-Chollier,et al. A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution , 2010, BMC Evolutionary Biology.
[17] Zhe‐Xi Luo,et al. Evolutionary Development of the Middle Ear in Mesozoic Therian Mammals , 2009, Science.
[18] A. Meyer,et al. The evolutionary significance of ancient genome duplications , 2009, Nature Reviews Genetics.
[19] E. Wherry. Faculty Opinions recommendation of Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. , 2009 .
[20] M. Gerstein,et al. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. , 2009, Blood.
[21] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[22] R. Krumlauf,et al. Hox genes and segmentation of the vertebrate hindbrain. , 2009, Current topics in developmental biology.
[23] F. Rijli,et al. Hox genes in neural patterning and circuit formation in the mouse hindbrain. , 2009, Current topics in developmental biology.
[24] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[25] B. Wold,et al. Multigenome DNA sequence conservation identifies Hox cis-regulatory elements. , 2008, Genome research.
[26] D. Bartel,et al. MicroRNAs in the Hox network: an apparent link to posterior prevalence , 2008, Nature Reviews Genetics.
[27] Sonja J. Prohaska,et al. The amphioxus Hox cluster: characterization, comparative genomics, and evolution. , 2008, Journal of experimental zoology. Part B, Molecular and developmental evolution.
[28] F. Slack,et al. Small non-coding RNAs in animal development , 2008, Nature Reviews Molecular Cell Biology.
[29] L. Ringrose,et al. How does noncoding transcription regulate Hox genes? , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.
[30] A. Durston,et al. MiR-10 Represses HoxB1a and HoxB3a in Zebrafish , 2008, PloS one.
[31] Zhe‐Xi Luo,et al. Transformation and diversification in early mammal evolution , 2007, Nature.
[32] Denis Duboule,et al. The rise and fall of Hox gene clusters , 2007, Development.
[33] Morgane Thomas-Chollier,et al. HoxPred: automated classification of Hox proteins using combinations of generalised profiles , 2007, BMC Bioinformatics.
[34] Howard Y. Chang,et al. Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.
[35] Kiyoshi Asai,et al. Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus. , 2007, Biochemical and biophysical research communications.
[36] C. Ponting,et al. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. , 2007, Genome research.
[37] Kate E. Jones,et al. The delayed rise of present-day mammals , 1990, Nature.
[38] S. Papageorgiou. HOX Gene Expression , 2007 .
[39] S. Petruk,et al. A Model for Initiation of Mosaic HOX Gene Expression Patterns by Non-Coding RNAs in Early Embryos , 2007, RNA biology.
[40] O. Pourquié,et al. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression , 2006, Nature.
[41] Eric H Davidson,et al. Unusual gene order and organization of the sea urchin hox cluster. , 2006, Journal of experimental zoology. Part B, Molecular and developmental evolution.
[42] Michael T. McManus,et al. The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development , 2005, Nature.
[43] A. Poustka,et al. Timing and mechanism of ancient vertebrate genome duplications -- the adventure of a hypothesis. , 2005, Trends in genetics : TIG.
[44] Fei Li,et al. MicroRNA identification based on sequence and structure alignment , 2005, Bioinform..
[45] J. van Nes,et al. Developmental regulation of the Hox genes during axial morphogenesis in the mouse , 2005, Development.
[46] C. Tabin,et al. Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function , 2005, Nature.
[47] Richard S. J. Frackowiak,et al. Neurolinguistics: Structural plasticity in the bilingual brain , 2004, Nature.
[48] Anton J. Enright,et al. Human MicroRNA Targets , 2004, PLoS biology.
[49] Ram Samudrala,et al. Mouse transcriptome: Neutral evolution of ‘non-coding’ complementary DNAs , 2004, Nature.
[50] Lior Pachter,et al. VISTA: computational tools for comparative genomics , 2004, Nucleic Acids Res..
[51] Sonja J. Prohaska,et al. Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications. , 2004, Molecular phylogenetics and evolution.
[52] D. Bartel,et al. MicroRNA-Directed Cleavage of HOXB8 mRNA , 2004, Science.
[53] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[54] M. Monden,et al. Expression profiles of 39 HOX genes in normal human adult organs and anaplastic thyroid cancer cell lines by quantitative real-time RT-PCR system. , 2004, Experimental cell research.
[55] S. Forlani,et al. Acquisition of Hox codes during gastrulation and axial elongation in the mouse embryo , 2003, Development.
[56] Axel Meyer,et al. Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. , 2003, Genome research.
[57] G. Church,et al. Computational and experimental identification of C. elegans microRNAs. , 2003, Molecular cell.
[58] S. Baigent,et al. HOX GENE EXPRESSION IN ADULT TISSUES WITH PARTICULAR REFERENCE TO THE ADRENAL GLAND , 2002, Endocrine research.
[59] Peter W. H. Holland,et al. Ancient origin of the Hox gene cluster , 2001, Nature Reviews Genetics.
[60] Juan Carlos Izpisúa Belmonte,et al. Patterning mechanisms controlling vertebrate limb development. , 2001, Annual review of cell and developmental biology.
[61] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.
[62] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.
[63] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[64] S. Gaunt,et al. Temporal colinearity in expression of anterior hox genes in developing chick embryos , 1996, Developmental dynamics : an official publication of the American Association of Anatomists.
[65] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.