A Fast Method for the Segmentation of Synaptic Junctions and Mitochondria in Serial Electron Microscopic Images of the Brain

[1]  Concha Bielza,et al.  Three-dimensional distribution of cortical synapses: a replicated point pattern-based analysis , 2014, Front. Neuroanat..

[2]  B. S. Manjunath,et al.  Synapse classification and localization in Electron Micrographs , 2014, Pattern Recognit. Lett..

[3]  Ziv Bar-Joseph,et al.  A high-throughput framework to detect synapses in electron microscopy images , 2013, Bioinform..

[4]  Pascal Fua,et al.  Learning Context Cues for Synapse Segmentation , 2013, IEEE Transactions on Medical Imaging.

[5]  Mark H. Ellisman,et al.  Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets , 2012, BMC Bioinformatics.

[6]  Pascal Fua,et al.  Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features , 2012, IEEE Transactions on Medical Imaging.

[7]  Fred A. Hamprecht,et al.  Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images , 2011, PloS one.

[8]  Ullrich Köthe,et al.  Ilastik: Interactive learning and segmentation toolkit , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[9]  Javier DeFelipe,et al.  Espina: A Tool for the Automated Segmentation and Counting of Synapses in Large Stacks of Electron Microscopy Images , 2011, Front. Neuroanat..

[10]  Javier DeFelipe,et al.  From the Connectome to the Synaptome: An Epic Love Story , 2010, Science.

[11]  George Perry,et al.  Alzheimer's disease: diverse aspects of mitochondrial malfunctioning. , 2010, International journal of clinical and experimental pathology.

[12]  Victor S. Lempitsky,et al.  Surface extraction from binary volumes with higher-order smoothness , 2010, 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[13]  Joseph F. Murray,et al.  Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation , 2010, Neural Computation.

[14]  Javier DeFelipe,et al.  Counting Synapses Using FIB/SEM Microscopy: A True Revolution for Ultrastructural Volume Reconstruction , 2009, Front. Neuroanat..

[15]  Alexander G. Gray,et al.  Automatic joint classification and segmentation of whole cell 3D images , 2009, Pattern Recognit..

[16]  Ross T. Whitaker,et al.  Axon tracking in serial block-face scanning electron microscopy , 2009, Medical Image Anal..

[17]  Michal Haindl,et al.  Texture segmentation benchmark , 2008, 2008 19th International Conference on Pattern Recognition.

[18]  G. Knott,et al.  Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling , 2008, The Journal of Neuroscience.

[19]  H. McBride,et al.  Mitochondria: More Than Just a Powerhouse , 2006, Current Biology.

[20]  W. Denk,et al.  Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure , 2004, PLoS biology.

[21]  Olga Veksler,et al.  Fast approximate energy minimization via graph cuts , 2001, Proceedings of the Seventh IEEE International Conference on Computer Vision.

[22]  Jitendra Malik,et al.  A database of human segmented natural images and its application to evaluating segmentation algorithms and measuring ecological statistics , 2001, Proceedings Eighth IEEE International Conference on Computer Vision. ICCV 2001.