Projective diffeomorphic mapping of molecular digital pathology with tissue MRI

[1]  D. Tward An Optical Flow Based Left-Invariant Metric for Natural Gradient Descent in Affine Image Registration , 2021, Frontiers in Applied Mathematics and Statistics.

[2]  A. Wills,et al.  Physics-informed machine learning , 2021, Nature Reviews Physics.

[3]  J. Vencovský,et al.  Plasma Hsp90 levels in patients with systemic sclerosis and relation to lung and skin involvement: a cross-sectional and longitudinal study , 2021, Scientific Reports.

[4]  Hongkui Zeng,et al.  Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice , 2020, Neuron.

[5]  Joakim Lundeberg,et al.  Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease , 2020, Cell.

[6]  M. Mildner,et al.  Re-epithelialization and immune cell behaviour in an ex vivo human skin model , 2020, Scientific Reports.

[7]  Maged Goubran,et al.  Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI , 2019, Nature Communications.

[8]  Brian C. Lee,et al.  Multimodal cross‐registration and quantification of metric distortions in marmoset whole brain histology using diffeomorphic mappings , 2020, The Journal of comparative neurology.

[9]  H. Dodt,et al.  Deconvolution of light sheet microscopy recordings , 2019, Scientific Reports.

[10]  Hang Yu,et al.  Light-Sheet Microscopy in Neuroscience. , 2019, Annual review of neuroscience.

[11]  Michael I. Miller,et al.  Identifying Changepoints in Biomarkers During the Preclinical Phase of Alzheimer’s Disease , 2019, Front. Aging Neurosci..

[12]  Michael I. Miller,et al.  Diffeomorphic Registration With Intensity Transformation and Missing Data: Application to 3D Digital Pathology of Alzheimer's Disease , 2018, bioRxiv.

[13]  J. E. Iglesias,et al.  A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology , 2018, NeuroImage.

[14]  Michael I Miller,et al.  On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model , 2018, bioRxiv.

[15]  Sébastien Ourselin,et al.  Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections , 2018, Medical Image Anal..

[16]  E. Düzel,et al.  A protocol for manual segmentation of medial temporal lobe subregions in 7 Tesla MRI , 2017, NeuroImage: Clinical.

[17]  K. Seppi,et al.  Magnetic resonance imaging for the diagnosis of Parkinson’s disease , 2017, Journal of Neural Transmission.

[18]  Johnny T. C. Hsu,et al.  Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI , 2016, NeuroImage.

[19]  G. V. Van Hoesen,et al.  Organization and detailed parcellation of human hippocampal head and body regions based on a combined analysis of Cyto‐ and chemoarchitecture , 2015, The Journal of comparative neurology.

[20]  Jane S. Paulsen,et al.  Regionally selective atrophy of subcortical structures in prodromal HD as revealed by statistical shape analysis , 2012, Human brain mapping.

[21]  Tahreema N. Matin,et al.  MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration , 2012, Medical Image Anal..

[22]  Hugo J. Kuijf,et al.  Subfields of the hippocampal formation at 7T MRI: In vivo volumetric assessment , 2012, NeuroImage.

[23]  J. Schneider,et al.  National Institute on Aging–Alzheimer's Association guidelines for the neuropathologic assessment of Alzheimer's disease , 2012, Alzheimer's & Dementia.

[24]  Michael I. Miller,et al.  Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging , 2009, NeuroImage.

[25]  Brian B. Avants,et al.  Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain , 2008, Medical Image Anal..

[26]  H. Braak,et al.  Staging of Alzheimer disease-associated neurofibrillary pathology using paraffin sections and immunocytochemistry , 2006, Acta Neuropathologica.

[27]  K. Amunts,et al.  Cytoarchitectonic mapping of the human amygdala, hippocampal region and entorhinal cortex: intersubject variability and probability maps , 2005, Anatomy and Embryology.

[28]  Paul Dupuis,et al.  Variational problems on ows of di eomorphisms for image matching , 1998 .

[29]  R. Insausti,et al.  The human entorhinal cortex: A cytoarchitectonic analysis , 1995, The Journal of comparative neurology.

[30]  C. Jack,et al.  Framework : Towards a Biological Definition of Alzheimer ’ s Disease 1 2 draft 9-19-17 3 4 5 , 2017 .

[31]  L. Younes,et al.  On the metrics and euler-lagrange equations of computational anatomy. , 2002, Annual review of biomedical engineering.

[32]  NeuroImage: Clinical Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment , 2022 .