The apical root canal system microbial communities determined by next-generation sequencing

[1]  A. Rickard,et al.  Deciphering Endodontic Microbial Communities by Next‐generation Sequencing , 2018, Journal of endodontics.

[2]  A. Gonçalves,et al.  Metagenomic study of bacterial microbiota in persistent endodontic infections using Next‐generation sequencing , 2018, International endodontic journal.

[3]  K. Biswas,et al.  Evaluation of Bacteriological Profile in the Apical Root Segment of the Patients with Primary Apical Periodontitis. , 2017, The journal of contemporary dental practice.

[4]  A. Blom,et al.  FACIN, a Double-Edged Sword of the Emerging Periodontal Pathogen Filifactor alocis: A Metabolic Enzyme Moonlighting as a Complement Inhibitor , 2016, The Journal of Immunology.

[5]  I. N. Rôças,et al.  Microbiome in the Apical Root Canal System of Teeth with Post-Treatment Apical Periodontitis , 2016, PloS one.

[6]  S. Uriarte,et al.  Filifactor alocis Promotes Neutrophil Degranulation and Chemotactic Activity , 2016, Infection and Immunity.

[7]  R. Teles,et al.  Microbial Ecosystem Analysis in Root Canal Infections Refractory to Endodontic Treatment. , 2016, Journal of endodontics.

[8]  A. Bardow,et al.  Bacterial composition in whole saliva from patients with severe hyposalivation--a case-control study. , 2016, Oral diseases.

[9]  B. Paster,et al.  Comparative analysis of bacterial profiles in unstimulated and stimulated saliva samples , 2016, Journal of oral microbiology.

[10]  B. Paster,et al.  Salivary bacterial fingerprints of established oral disease revealed by the Human Oral Microbe Identification using Next Generation Sequencing (HOMINGS) technique , 2016, Journal of oral microbiology.

[11]  Tsute Chen,et al.  Microbiomes of Endodontic-Periodontal Lesions before and after Chemomechanical Preparation. , 2015, Journal of endodontics.

[12]  K. Divaris,et al.  Comparison of Bacterial Community Composition of Primary and Persistent Endodontic Infections Using Pyrosequencing. , 2015, Journal of endodontics.

[13]  C. Pannuti,et al.  Evaluation of human and microbial DNA content in subgingival plaque samples collected by paper points or curette. , 2015, Journal of microbiological methods.

[14]  J. Truu,et al.  Highly diverse microbiota in dental root canals in cases of apical periodontitis (data of illumina sequencing). , 2014, Journal of endodontics.

[15]  Nick C Fox,et al.  Gene-Wide Analysis Detects Two New Susceptibility Genes for Alzheimer's Disease , 2014, PLoS ONE.

[16]  H. Fletcher,et al.  Filifactor alocis: The Newly Discovered Kid on the Block with Special Talents , 2014, Journal of dental research.

[17]  P. Ehrenfreund,et al.  Systematic evaluation of bias in microbial community profiles induced by whole genome amplification. , 2014, Environmental microbiology.

[18]  Kabir G. Peay,et al.  Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing , 2014, PloS one.

[19]  Stephanie L. Servetas,et al.  Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood , 2014, BMC Genomics.

[20]  G. Gloor,et al.  High throughput sequencing methods and analysis for microbiome research. , 2013, Journal of microbiological methods.

[21]  W. Crielaard,et al.  Sterile paper points as a bacterial DNA-contamination source in microbiome profiles of clinical samples. , 2013, Journal of dentistry.

[22]  Joonhong Park,et al.  Microbial analysis in primary and persistent endodontic infections by using pyrosequencing. , 2013, Journal of endodontics.

[23]  L. Drago,et al.  A case of coinfection in a chronic maxillary sinusitis of odontogenic origin: identification of Dialister pneumosintes. , 2013, Journal of endodontics.

[24]  E. Mardis Next-generation sequencing platforms. , 2013, Annual review of analytical chemistry.

[25]  Hamidreza Chitsaz,et al.  Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum , 2013, Proceedings of the National Academy of Sciences.

[26]  Pavel A Pevzner,et al.  Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform , 2013, Genome research.

[27]  A. Haffajee,et al.  Lessons learned and unlearned in periodontal microbiology , 2013, Periodontology 2000.

[28]  P. Diaz,et al.  The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation , 2013, The ISME Journal.

[29]  S. Kelley,et al.  Bacterial flora of dental periradicular lesions analyzed by the 454-pyrosequencing technology. , 2012, Journal of endodontics.

[30]  S. Socransky,et al.  Microbiologic profile of endodontic infections from HIV- and HIV+ patients using multiple-displacement amplification and checkerboard DNA-DNA hybridization. , 2012, Oral diseases.

[31]  C. Fraser-Liggett,et al.  Microbial transformation from normal oral microbiota to acute endodontic infections , 2012, BMC Genomics.

[32]  G. Hajishengallis,et al.  Porphyromonas gingivalis as a Potential Community Activist for Disease , 2012, Journal of dental research.

[33]  Magda Feres,et al.  A microbiological profile of unexposed and exposed pulp space of primary endodontic infections by checkerboard DNA-DNA hybridization. , 2012, Journal of endodontics.

[34]  P. Wesselink,et al.  Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments. , 2012, International endodontic journal.

[35]  Katherine H. Huang,et al.  Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.

[36]  William A. Walters,et al.  Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms , 2012, The ISME Journal.

[37]  J. Tiedje,et al.  Comparing the Bacterial Diversity of Acute and Chronic Dental Root Canal Infections , 2011, PloS one.

[38]  I. N. Rôças,et al.  Pyrosequencing analysis of the apical root canal microbiota. , 2011, Journal of endodontics.

[39]  D. Zezell,et al.  Exploring bacterial diversity of endodontic microbiota by cloning and sequencing 16S rRNA. , 2011, Journal of endodontics.

[40]  A. Rosado,et al.  Apical root canal microbiota as determined by reverse-capture checkerboard analysis of cryogenically ground root samples from teeth with apical periodontitis. , 2010, Journal of endodontics.

[41]  Wen-Han Yu,et al.  The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information , 2010, Database J. Biol. Databases Curation.

[42]  William A. Walters,et al.  Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.

[43]  E. Mongodin,et al.  Analyzing Endodontic Infections by Deep Coverage Pyrosequencing , 2010, Journal of dental research.

[44]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[45]  J. Lennon,et al.  Dormancy contributes to the maintenance of microbial diversity , 2010, Proceedings of the National Academy of Sciences.

[46]  I. N. Rôças,et al.  Diversity of Endodontic Microbiota Revisited , 2009, Journal of dental research.

[47]  A. Rosado,et al.  Bacterial community profiling of cryogenically ground samples from the apical and coronal root segments of teeth with apical periodontitis. , 2009, Journal of endodontics.

[48]  I. N. Rôças,et al.  Root Canal Microbiota of Teeth with Chronic Apical Periodontitis , 2008, Journal of Clinical Microbiology.

[49]  B. Gomes,et al.  Microbial analysis of canals of root-filled teeth with periapical lesions using polymerase chain reaction. , 2008, Journal of endodontics.

[50]  S. Socransky,et al.  Use of Multiple-Displacement Amplification and Checkerboard DNA-DNA Hybridization To Examine the Microbiota of Endodontic Infections , 2007, Journal of Clinical Microbiology.

[51]  S. Socransky,et al.  Multiple displacement amplification as an aid in checkerboard DNA-DNA hybridization. , 2007, Oral microbiology and immunology.

[52]  L. Dubreuil,et al.  Isolation of Dialister pneumosintes isolated from a bacteremia of vaginal origin. , 2006, Anaerobe.

[53]  M. Sakamoto,et al.  Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. , 2006, Oral microbiology and immunology.

[54]  B. Gomes,et al.  Porphyromonas gingivalis, Porphyromonas endodontalis, Prevotella intermedia and Prevotella nigrescens in endodontic lesions detected by culture and by PCR. , 2005, Oral microbiology and immunology.

[55]  J. Costerton,et al.  Biofilms: Survival Mechanisms of Clinically Relevant Microorganisms , 2002, Clinical Microbiology Reviews.

[56]  J. Costerton,et al.  Bacterial biofilms: a common cause of persistent infections. , 1999, Science.

[57]  G. Sundqvist,et al.  Ecology of the root canal flora. , 1992, Journal of endodontics.