Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates
暂无分享,去创建一个
Hua Tang | E. Nevo | P. Michalak | A. Korol | Simpla Mahato | A. Zelhof | L. Kang | Kexin Li | J. Fu | E. Rashkovetsky | J. B. Li | A. Yablonovitch | Arielle Yablonovitch
[1] S. Kadener,et al. Dynamic hyper-editing underlies temperature adaptation in Drosophila , 2017, PLoS genetics.
[2] S. Luo,et al. Adaptation of A-to-I RNA editing in Drosophila , 2017, PLoS genetics.
[3] Jin Billy Li,et al. Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing , 2017, PLoS genetics.
[4] Pei Hao,et al. The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection , 2016, PLoS genetics.
[5] J. Parsch,et al. An Indel Polymorphism in the MtnA 3' Untranslated Region Is Associated with Gene Expression Variation and Local Adaptation in Drosophila melanogaster , 2016, PLoS genetics.
[6] Li Zhao,et al. The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster , 2016, PLoS genetics.
[7] S. Nuzhdin,et al. Genetic Determinants of RNA Editing Levels of ADAR Targets in Drosophila melanogaster , 2015, G3: Genes, Genomes, Genetics.
[8] Wen J. Li,et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation , 2015, Nucleic Acids Res..
[9] Giulia Antonazzo,et al. FlyBase: establishing a Gene Group resource for Drosophila melanogaster , 2015, Nucleic Acids Res..
[10] T. Mackay,et al. Genetic mapping uncovers cis-regulatory landscape of RNA editing , 2015, Nature Communications.
[11] Andrew D. Kern,et al. S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning , 2015, bioRxiv.
[12] Jin Billy Li,et al. Cis regulatory effects on A-to-I RNA editing in related Drosophila species. , 2015, Cell reports.
[13] Yiannis A. Savva,et al. Dynamic response of RNA editing to temperature in Drosophila , 2015, BMC Biology.
[14] J. Doudna,et al. The new frontier of genome engineering with CRISPR-Cas9 , 2014, Science.
[15] D. Karolchik,et al. The UCSC Genome Browser database: 2016 update , 2015, bioRxiv.
[16] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[17] Yanhui Hu,et al. Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in Drosophila. , 2014, Cell reports.
[18] Stephen B. Montgomery,et al. Transcriptome Sequencing from Diverse Human Populations Reveals Differentiated Regulatory Architecture , 2014, PLoS genetics.
[19] Young Bun Kim,et al. Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel , 2014, Proceedings of the National Academy of Sciences.
[20] Simon L. Bullock,et al. Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila , 2014, Proceedings of the National Academy of Sciences.
[21] E. Schreiber,et al. Detecting and Quantifying Low Level Gene Variants in Sanger Sequencing Traces Using the ab1 Peak Reporter Tool. , 2014 .
[22] Young Bun Kim,et al. Genome differentiation of Drosophila melanogaster from a microclimate contrast in Evolution Canyon, Israel , 2013, Proceedings of the National Academy of Sciences.
[23] Jin Billy Li,et al. RADAR: a rigorously annotated database of A-to-I RNA editing , 2013, Nucleic Acids Res..
[24] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[25] Hunter B. Fraser,et al. The Molecular Mechanism of a Cis-Regulatory Adaptation in Yeast , 2013, PLoS genetics.
[26] Hunter B. Fraser,et al. Gene expression drives local adaptation in humans , 2013, Genome research.
[27] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[28] W. Shi,et al. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote , 2013, Nucleic acids research.
[29] A. Futschik,et al. Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples , 2013, Molecular ecology resources.
[30] J. Parsch,et al. Population and sex differences in Drosophila melanogaster brain gene expression , 2012, BMC Genomics.
[31] S. Bhattacharya,et al. Cross species analysis of Prominin reveals a conserved cellular role in invertebrate and vertebrate photoreceptor cells. , 2012, Developmental biology.
[32] Joshua J C Rosenthal,et al. RNA Editing Underlies Temperature Adaptation in K+ Channels from Polar Octopuses , 2012, Science.
[33] E. Nevo. “Evolution Canyon,” a potential microscale monitor of global warming across life , 2012, Proceedings of the National Academy of Sciences.
[34] M. Raida,et al. RNA Editing of the IQ Domain in Cav1.3 Channels Modulates Their Ca2+-Dependent Inactivation , 2012, Neuron.
[35] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[36] Yiannis A. Savva,et al. Engineered Alterations in RNA Editing Modulate Complex Behavior in Drosophila , 2010, The Journal of Biological Chemistry.
[37] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[38] David H. Mathews,et al. RNAstructure: software for RNA secondary structure prediction and analysis , 2010, BMC Bioinformatics.
[39] Matthew D. Young,et al. Gene ontology analysis for RNA-seq: accounting for selection bias , 2010, Genome Biology.
[40] Jeremy Schmutz,et al. Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer , 2010, Science.
[41] Richard Durbin,et al. Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..
[42] S. Carroll,et al. Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population , 2009, Science.
[43] Eviatar Nevo,et al. Evolution in action across life at “Evolution Canyons”, Israel , 2009 .
[44] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[45] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[46] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[47] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[48] B. Browning,et al. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. , 2009, American journal of human genetics.
[49] W. Chia,et al. Protein phosphatase 4 mediates localization of the Miranda complex during Drosophila neuroblast asymmetric divisions. , 2009, Genes & development.
[50] E. Nevo,et al. Drosophila at the "Evolution Canyon" Microsite, MT. Carmel, Israel: Selection Overrules Migration , 2008 .
[51] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[52] A. Hatzigeorgiou,et al. Redirection of Silencing Targets by Adenosine-to-Inosine Editing of miRNAs , 2007, Science.
[53] E. Nevo,et al. Drosophila flies in “Evolution Canyon” as a model for incipient sympatric speciation , 2006, Proceedings of the National Academy of Sciences.
[54] C. Zuker,et al. Transforming the architecture of compound eyes , 2006, Nature.
[55] E. Nevo,et al. Adaptive differentiation of thermotolerance in Drosophila along a microclimatic gradient , 2006, Heredity.
[56] E. Hafen,et al. A Novel, Evolutionarily Conserved Protein Phosphatase Complex Involved in Cisplatin Sensitivity*S , 2005, Molecular & Cellular Proteomics.
[57] J. Hermisson,et al. Soft Sweeps , 2005, Genetics.
[58] R. Reenan. Molecular determinants and guided evolution of species-specific RNA editing , 2005, Nature.
[59] John D. Storey,et al. Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[60] S. Carroll,et al. Drosophila pigmentation evolution: Divergent genotypes underlying convergent phenotypes , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[61] E. Myers,et al. Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence , 2002, Genome Biology.
[62] D. Hultmark,et al. A family of Turandot-related genes in the humoral stress response of Drosophila. , 2001, Biochemical and biophysical research communications.
[63] V. Loeschcke,et al. Genetic variation in thermal tolerance among natural populations of Drosophila buzzatii: down regulation of Hsp70 expression and variation in heat stress resistance traits , 2001 .
[64] Katja Röper,et al. Prominin: A Story of Cholesterol, Plasma Membrane Protrusions and Human Pathology , 2001, Traffic.
[65] R. Reenan,et al. A-to-I Pre-mRNA Editing in Drosophila Is Primarily Involved in Adult Nervous System Function and Integrity , 2000, Cell.
[66] D. Feldmeyer,et al. Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2 , 2000, Nature.
[67] F. Kawasaki,et al. A Temperature-Sensitive Paralytic Mutant Defines a Primary Synaptic Calcium Channel in Drosophila , 2000, The Journal of Neuroscience.
[68] Stephen M. Mount,et al. The genome sequence of Drosophila melanogaster. , 2000, Science.
[69] T. Dawson,et al. Regulation of alternative splicing by RNA editing , 1999, Nature.
[70] J. C. Hall,et al. Courtship and visual defects of cacophony mutants reveal functional complexity of a calcium-channel alpha1 subunit in Drosophila. , 1998, Genetics.
[71] J. C. Hall,et al. Analysis of temperature-sensitive mutants reveals new genes involved in the courtship song of Drosophila. , 1998, Genetics.
[72] Eviatar Nevo,et al. Asian, African and European biota meet at ‘Evolution Canyon’ Israel: local tests of global biodiversity and genetic diversity patterns , 1995, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[73] Tomáš Pavlíček,et al. Microclimatic interslope differences underlying biodiversity contrasts in "Evolution Canyon", Mt. Carmel, Israel , 2003 .
[74] D. Ready,et al. Eyes closed, a Drosophila p47 homolog, is essential for photoreceptor morphogenesis. , 2002, Development.