Phaeodactylum tricornutum: An established model species for diatom molecular research and an emerging chassis for algal synthetic biology
暂无分享,去创建一个
[1] Karen Beeri,et al. Validating a Promoter Library for Application in Plasmid-Based Diatom Genetic Engineering , 2023, ACS synthetic biology.
[2] Nicole Poulsen,et al. Thalassiosira pseudonana (Cyclotella nana) (Hustedt) Hasle et Heimdal (Bacillariophyceae): A genetically tractable model organism for studying diatom biology, including biological silica formation , 2023, Journal of phycology.
[3] Bogumil J. Karas,et al. Design and assembly of the 117-kb Phaeodactylum tricornutum chloroplast genome , 2023, bioRxiv.
[4] M. Montresor,et al. The pennate diatom Pseudo‐nitzschia multistriata as a model for diatom life cycles, from the laboratory to the sea , 2023, Journal of phycology.
[5] J. Schmutz,et al. The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life , 2023, Journal of phycology.
[6] A. Falciatore,et al. Diatom phytochromes integrate the entire visible light spectra for photosensing in marine environments , 2023, bioRxiv.
[7] C. Bowler,et al. Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros , 2022, PLoS biology.
[8] A. Falciatore,et al. Rhythms and Clocks in Marine Organisms. , 2022, Annual review of marine science.
[9] Alaguraj Veluchamy,et al. PhaeoEpiView: an epigenome browser of the newly assembled genome of the model diatom Phaeodactylum tricornutum , 2022, bioRxiv.
[10] Stephen J. Reaume,et al. Phosphate-regulated expression of the SARS-CoV-2 receptor-binding domain in the diatom Phaeodactylum tricornutum for pandemic diagnostics , 2022, Scientific Reports.
[11] Bogumil J. Karas,et al. Towards synthetic diatoms: The Phaeodactylum tricornutum Pt-syn 1.0 project , 2022, Current Opinion in Green and Sustainable Chemistry.
[12] S. Boussiba,et al. Multiplexed Genome Editing via an RNA Polymerase II Promoter-Driven sgRNA Array in the Diatom Phaeodactylum tricornutum: Insights Into the Role of StLDP , 2022, Frontiers in Plant Science.
[13] P. Kroth,et al. Identification of sequence motifs in Lhcx proteins that confer qE-based photoprotection in the diatom Phaeodactylum tricornutum. , 2021, The Plant journal : for cell and molecular biology.
[14] S. Ben-Dor,et al. Biochemical Characterization of a Novel Redox-Regulated Metacaspase in a Marine Diatom , 2021, Frontiers in Microbiology.
[15] A. Falciatore,et al. Biochemical and molecular properties of LHCX1, the essential regulator of dynamic photoprotection in diatoms. , 2021, Plant physiology.
[16] Tom O. Delmont,et al. Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms , 2021, Current Biology.
[17] B. Curtis,et al. Re-examination of two diatom reference genomes using long-read sequencing , 2021, BMC Genomics.
[18] Daniel J. Giguere,et al. Telomere-to-telomere genome assembly of Phaeodactylum tricornutum , 2021, bioRxiv.
[19] M. Pernice,et al. Characterisation of novel regulatory sequences compatible with modular assembly in the diatom Phaeodactylum tricornutum , 2021 .
[20] C. Brownlee,et al. A Novel Ca2+ Signaling Pathway Coordinates Environmental Phosphorus Sensing and Nitrogen Metabolism in Marine Diatoms , 2020, Current Biology.
[21] A. Genovesio,et al. PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum , 2020, Frontiers in Plant Science.
[22] Daniel J. Giguere,et al. Plasmid-based complementation of large deletions in Phaeodactylum tricornutum biosynthetic genes generated by Cas9 editing , 2020, Scientific Reports.
[23] K. Vandepoele,et al. The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms , 2020, Nature Communications.
[24] P. Ralph,et al. Extrachromosomal genetic engineering of the marine diatom Phaeodactylum tricornutum enables the heterologous production of monoterpenoids. , 2020, ACS synthetic biology.
[25] Tamara Matute,et al. Universal loop assembly: open, efficient and cross-kingdom DNA fabrication , 2020, Synthetic biology.
[26] Bogumil J. Karas,et al. Rapid method for generating designer algal mitochondrial genomes , 2019, bioRxiv.
[27] A. Falciatore,et al. Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity[OPEN] , 2019, Plant Cell.
[28] P. Falkowski,et al. Lhcx proteins provide photoprotection via thermal dissipation of absorbed light in the diatom Phaeodactylum tricornutum , 2019, Nature Communications.
[29] A. Falciatore,et al. bHLH-PAS protein RITMO1 regulates diel biological rhythms in the marine diatom Phaeodactylum tricornutum , 2019, Proceedings of the National Academy of Sciences.
[30] Julius Fredens,et al. Total synthesis of Escherichia coli with a recoded genome , 2019, Nature.
[31] Sarah R. Smith,et al. Cross‐compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum , 2019, The New phytologist.
[32] F. Daboussi,et al. One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing , 2018, Nature Communications.
[33] G. Lowe,et al. Engineering the unicellular alga Phaeodactylum tricornutum for high‐value plant triterpenoid production , 2018, Plant biotechnology journal.
[34] P. Kersey,et al. Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms , 2018, Scientific Reports.
[35] Alaguraj Veluchamy,et al. A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum , 2017, The ISME Journal.
[36] Sarah R. Smith,et al. Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom[OPEN] , 2017, Plant Cell.
[37] Bogumil J. Karas,et al. Diatom centromeres suggest a mechanism for nuclear DNA acquisition , 2017, Proceedings of the National Academy of Sciences.
[38] G. Schoehn,et al. Plastid thylakoid architecture optimizes photosynthesis in diatoms , 2017, Nature Communications.
[39] A. Allen,et al. Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods , 2016, Front. Bioeng. Biotechnol..
[40] T. Mock,et al. Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana , 2016, bioRxiv.
[41] P. Winge,et al. A CRISPR/Cas9 system adapted for gene editing in marine algae , 2016, Scientific Reports.
[42] N. Baliga,et al. Pan-transcriptomic analysis identifies coordinated and orthologous functional modules in the diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum. , 2016, Marine genomics.
[43] J. Poulain,et al. Insights into global diatom distribution and diversity in the world’s ocean , 2016, Proceedings of the National Academy of Sciences.
[44] Christian Rogers,et al. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. , 2015, The New phytologist.
[45] P. Falkowski,et al. Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms , 2015, Nature.
[46] Ruben E. Valas,et al. Designer diatom episomes delivered by bacterial conjugation , 2015, Nature Communications.
[47] T. Mock,et al. Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage , 2015, The Plant journal : for cell and molecular biology.
[48] P. Falkowski,et al. Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress , 2014, Proceedings of the National Academy of Sciences.
[49] D. Voytas,et al. Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology , 2014, Nature Communications.
[50] Judy Qiu,et al. Total Synthesis of a Functional Designer Eukaryotic Chromosome , 2014, Science.
[51] C. Hutchison,et al. Assembly of eukaryotic algal chromosomes in yeast , 2013, Journal of biological engineering.
[52] Jaysheel D. Bhavsar,et al. Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum , 2013, Nature Communications.
[53] Wei-dong Yang,et al. Transformation of diatom Phaeodactylum tricornutum by electroporation and establishment of inducible selection marker. , 2012, BioTechniques.
[54] S. Rombauts,et al. The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner-Doudoroff glycolytic pathway. , 2012, The Plant journal : for cell and molecular biology.
[55] Sylvestre Marillonnet,et al. Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system , 2012 .
[56] A. Fernie,et al. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms , 2011, Nature.
[57] B. Green,et al. Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. , 2011, Gene.
[58] A. Falciatore,et al. An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light , 2010, Proceedings of the National Academy of Sciences.
[59] Thomas H Segall-Shapiro,et al. Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome , 2010, Science.
[60] P. Kroth,et al. FIRST INDUCED PLASTID GENOME MUTATIONS IN AN ALGA WITH SECONDARY PLASTIDS: psbA MUTATIONS IN THE DIATOM PHAEODACTYLUM TRICORNUTUM (BACILLARIOPHYCEAE) REVEAL CONSEQUENCES ON THE REGULATION OF PHOTOSYNTHESIS 1 , 2009, Journal of phycology.
[61] A. Falciatore,et al. Gene silencing in the marine diatom Phaeodactylum tricornutum , 2009, Nucleic acids research.
[62] Leszek Rychlewski,et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes , 2008, Nature.
[63] A. Fernie,et al. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation , 2008, Proceedings of the National Academy of Sciences.
[64] A. Falciatore,et al. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. , 2007, Gene.
[65] J. Grimwood,et al. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage , 2007, Molecular Genetics and Genomics.
[66] Johannes Goll,et al. The Diatom EST Database , 2004, Nucleic Acids Res..
[67] Nicholas H. Putnam,et al. The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism , 2004, Science.
[68] D. Trombetta,et al. In vitro antibacterial activity of some aliphatic aldehydes from Olea europaea L. , 2001, FEMS microbiology letters.
[69] A. Falciatore,et al. Transformation of Nonselectable Reporter Genes in Marine Diatoms , 1999, Marine Biotechnology.
[70] J. Randerson,et al. Primary production of the biosphere: integrating terrestrial and oceanic components , 1998, Science.
[71] A. Grossman,et al. Stable nuclear transformation of the diatomPhaeodactylum tricornutum , 1996, Molecular and General Genetics MGG.
[72] E. Jarvis,et al. GENETIC TRANSFORMATION OF THE DIATOMS CYCLOTELLA CRYPTICA AND NAVICULA SAPROPHILA , 1995 .
[73] R. Lewin,et al. Observations on Phaeodactylum tricornutum. , 1958, Journal of general microbiology.
[74] D. Cushing,et al. Electron microscope studies of diatoms. , 1954, Journal. Royal Microscopical Society.
[75] The Molecular Life of Diatoms , 2022 .
[76] BMC Bioinformatics BioMed Central Methodology article HECTAR: A method to predict subcellular targeting in heterokonts , 2008 .
[77] H. A. Barker. Photosynthesis in diatoms , 2004, Archiv für Mikrobiologie.
[78] E. Neufeld,et al. CARBOHYDRATE METABOLISM. , 1965, Annual review of biochemistry.
[79] F. Kützing. Synopsis Diatomearum, oder, Versuch einer systematischen Zusammenstellung der Diatomeen / , 1834 .