A Modular Workflow Management Framework

Task management systems are crucial tools in modern organizations, by simplifying the coordination of teams and their work. Those tools were developed mainly for task scheduling, assignment, follow-up and accountability. Then again, scientific workflow systems also appeared to help putting together a set of computational processes through the pipeline of inputs and outputs from each, creating in the end a more complex processing workflow. However, there is sometimes a lack of solutions that combine both manually operated tasks with automatic processes, in the same workflow system. In this paper, we present a web-based platform that incorporates some of the best functionalities of both systems, addressing the collaborative needs of a task manager with well-structured computational pipelines. The system is currently being used by a European consortium for the coordination of clinical studies.

[1]  J. Oliveira,et al.  The EU‐ADR Web Platform: delivering advanced pharmacovigilance tools , 2013, Pharmacoepidemiology and drug safety.

[2]  David R. Kuhn,et al.  Role-Based Access Control (RBAC): Features and Motivations | NIST , 1995 .

[3]  Mike P. Papazoglou,et al.  Service-oriented computing: concepts, characteristics and directions , 2003, Proceedings of the Fourth International Conference on Web Information Systems Engineering, 2003. WISE 2003..

[4]  Carole A. Goble,et al.  The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud , 2013, Nucleic Acids Res..

[5]  José Luís Oliveira,et al.  Architecture to Summarize Patient-Level Data Across Borders and Countries , 2015, MedInfo.

[6]  Martin Hofmann-Apitius,et al.  Boosting translational research on Alzheimer's disease in Europe: The Innovative Medicine Initiative AD research platform , 2015, Alzheimer's & Dementia.

[7]  Quan Z. Sheng,et al.  ' s personal copy Web services composition : A decade ’ s overview , 2014 .

[8]  John Chilton,et al.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update , 2016, Nucleic Acids Res..

[9]  Pedro Lopes,et al.  Challenges and Opportunities for Exploring Patient-Level Data , 2015, BioMed research international.

[10]  A. Barone,et al.  Health Data for Public Health: Towards New Ways of Combining Data Sources to Support Research Efforts in Europe , 2017, Yearbook of Medical Informatics.

[11]  Amit P. Sheth,et al.  An overview of workflow management: From process modeling to workflow automation infrastructure , 1995, Distributed and Parallel Databases.

[12]  Edoardo Vacchi,et al.  Data Extraction and Management in Networks of Observational Health Care Databases for Scientific Research: A Comparison of EU-ADR, OMOP, Mini-Sentinel and MATRICE Strategies , 2016, EGEMS.

[13]  Jan vom Brocke,et al.  On the role of context in business process management , 2016, Int. J. Inf. Manag..

[14]  Marta Mattoso,et al.  A Survey of Data-Intensive Scientific Workflow Management , 2015, Journal of Grid Computing.