A parametric gradient descent MRI intensity inhomogeneity correction algorithm

Given an appropriate imaging resolution, a common Magnetic Resonance Imaging (MRI) model assumes that the object under study is composed of homogeneous tissues whose imaging intensity is constant, so that MRI produces piecewise constant images. The intensity inhomogeneity (IIH) is modeled by a multiplicative inhomogeneity field. It is due to the spatial inhomogeneity in the excitatory Radio Frequency (RF) signal and other effects. It has been acknowledged as a greater source of error for automatic segmentation algorithms than additive noise. We propose a parametric IIH correction algorithm for MRI that consists of the gradient descent of an error function related to the classification error of the IIH corrected image. The inhomogeneity field is modeled as a linear combination of 3D products of Legendre polynomials. In this letter we test both the image restoration capabilities and the classification accuracy of the algorithm. In restoration processes the adaptive algorithm is used only to estimate the inhomogeneity field. Test images to be restored are IIH corrupted versions of the BrainWeb site simulations. The algorithm image restoration is evaluated by the correlation of the restored image with the known clean image. In classification processes the algorithm is used to estimate both the inhomogeneity field and the intensity class means. The algorithm classification accuracy is tested over the images from the IBSR site. The proposed algorithm is compared with Maximum A Posteriori (MAP) and Fuzzy Clustering algorithms.

[1]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[2]  Mohammed Yakoob Siyal,et al.  An intelligent modified fuzzy c-means based algorithm for bias estimation and segmentation of brain MRI , 2005, Pattern Recognit. Lett..

[3]  Guido Gerig,et al.  Nonlinear anisotropic filtering of MRI data , 1992, IEEE Trans. Medical Imaging.

[4]  Frithjof Kruggel,et al.  Segmentation of MR images with intensity inhomogeneities , 1998, Image Vis. Comput..

[5]  Jan Sijbers,et al.  Adaptive anisotropic noise filtering for magnitude MR data , 1999, Medical Imaging.

[6]  Michael Brady,et al.  Estimating the bias field of MR images , 1997, IEEE Transactions on Medical Imaging.

[7]  Hong Yan,et al.  An adaptive spatial fuzzy clustering algorithm for 3-D MR image segmentation , 2003, IEEE Transactions on Medical Imaging.

[8]  Atam P. Dhawan Medical Image Analysis , 2003 .

[9]  Alan C. Evans,et al.  An Extensible MRI Simulator for Post-Processing Evaluation , 1996, VBC.

[10]  Olivier Salvado,et al.  Method to correct intensity inhomogeneity in MR images for atherosclerosis characterization , 2006, IEEE Transactions on Medical Imaging.

[11]  Bostjan Likar,et al.  A Review of Methods for Correction of Intensity Inhomogeneity in MRI , 2007, IEEE Transactions on Medical Imaging.

[12]  Alan C. Evans,et al.  BrainWeb: Online Interface to a 3D MRI Simulated Brain Database , 1997 .

[13]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[14]  Donald Geman,et al.  Constrained Restoration and the Recovery of Discontinuities , 1992, IEEE Trans. Pattern Anal. Mach. Intell..

[15]  Manuel Graña,et al.  A Gradient Descent MRI Illumination Correction Algorithm , 2005, IWANN.

[16]  A. Evans,et al.  MRI simulation-based evaluation of image-processing and classification methods , 1999, IEEE Transactions on Medical Imaging.

[17]  Martin Styner,et al.  Parametric estimate of intensity inhomogeneities applied to MRI , 2000, IEEE Transactions on Medical Imaging.

[18]  Jerry L. Prince,et al.  Adaptive fuzzy segmentation of magnetic resonance images , 1999, IEEE Transactions on Medical Imaging.

[19]  Baba C. Vemuri,et al.  An Accurate and Efficient Bayesian Method for Automatic Segmentation of Brain MRI , 2002, ECCV.

[20]  D. Louis Collins,et al.  Design and construction of a realistic digital brain phantom , 1998, IEEE Transactions on Medical Imaging.

[21]  Guido Gerig,et al.  Compensation of Spatial Inhomogeneity in MRI Based on a Parametric Bias Estimate , 1996, VBC.

[22]  Donald Geman,et al.  Boundary Detection by Constrained Optimization , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[23]  Zujun Hou,et al.  A Review on MR Image Intensity Inhomogeneity Correction , 2006, Int. J. Biomed. Imaging.

[24]  W. Eric L. Grimson,et al.  Adaptive Segmentation of MRI Data , 1995, CVRMed.

[25]  David G. Stork,et al.  Pattern Classification , 1973 .

[26]  Stan Z. Li,et al.  Robustizing robust M-estimation using deterministic annealing , 1996, Pattern Recognit..

[27]  Aly A. Farag,et al.  A modified fuzzy c-means algorithm for bias field estimation and segmentation of MRI data , 2002, IEEE Transactions on Medical Imaging.

[28]  Rafael C. González,et al.  Local Determination of a Moving Contrast Edge , 1985, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[29]  J. C. Dunn,et al.  A Fuzzy Relative of the ISODATA Process and Its Use in Detecting Compact Well-Separated Clusters , 1973 .

[30]  Sankar K. Pal,et al.  Fuzzy models for pattern recognition , 1992 .

[31]  James C. Bezdek,et al.  Pattern Recognition with Fuzzy Objective Function Algorithms , 1981, Advanced Applications in Pattern Recognition.