Proteomics identifies molecular networks affected by tetradecylthioacetic acid and fish oil supplemented diets.

UNLABELLED Fish oil (FO) and tetradecylthioacetic acid (TTA) - a synthetic modified fatty acid have beneficial effects in regulating lipid metabolism. In order to dissect the mechanisms underlying the molecular action of those two fatty acids we have investigated the changes in mitochondrial protein expression in a long-term study (50weeks) in male Wistar rats fed 5 different diets. The diets were as follows: low fat diet; high fat diet; and three diets that combined high fat diet with fish oil, TTA or combination of those two as food supplements. We used two different proteomics techniques: a protein centric based on 2D gel electrophoresis and mass spectrometry, and LC-MS(E) based peptide centric approach. As a result we provide evidence that fish oil and TTA modulate mitochondrial metabolism in a synergistic manner yet the effects of TTA are much more dramatic. We demonstrate that fatty acid metabolism; lipid oxidation, amino acid metabolism and oxidative phosphorylation pathways are involved in fish oil and TTA action. Evidence for the involvement of PPAR mediated signalling is provided. Additionally we postulate that down regulation of components of complexes I and II contributes to the strong antioxidant properties of TTA. BIOLOGICAL SIGNIFICANCE This study for the first time explores the effect of fish oil and TTA - tetradecyl-thioacetic acid and the combination of those two as diet supplements on mitochondria metabolism in a comprehensive and systematic manner. We show that fish oil and TTA modulate mitochondrial metabolism in a synergistic manner yet the effects of TTA are much more dramatic. We demonstrate in a large scale that fatty acid metabolism and lipid oxidation are affected by fish oil and TTA, a phenomenon already known from more directed molecular biology studies. Our approach, however, shows additionally that amino acid metabolism and oxidative phosphorylation pathways are also strongly affected by TTA and also to some extent by fish oil administration. Strong evidence for the involvement of PPAR mediated signalling is provided linking the different metabolic effects. The global and systematic viewpoint of this study compiles many of the known phenomena related to the effects of fish oil and fatty acids giving a solid foundation for further exploratory and more directed studies of the mechanisms behind the beneficial and detrimental effects of fish oil and TTA diet supplementation. This work is already a second article in a series of studies conducted using this model of dietary intervention. In the previous study (Vigerust et al., [21]) the effects of fish oil and TTA on the plasma lipids and cholesterol levels as well as key metabolic enzymes in the liver have been studied. In an ongoing study more work is being done to explore in detail for example the link between the down regulation of the components of the respiratory chain (observed in this study) and the strong antioxidant effects of TTA. The reference diet in this study has been designed to mimic an unhealthy - high fat diet that is thought to contribute to the development of metabolic syndrome - a condition that is strongly associated with diabetes, obesity and heart failure. Fish oil and TTA are known to have beneficial effects for the fatty acid metabolism and have been shown to alleviate some of the symptoms of the metabolic syndrome. To date very little is known about the molecular mechanisms behind these beneficial effects and the potential pitfalls of the consumption of those two compounds. Only studies of each compound separately and using only small scale molecular biology approaches have been carried out. The results of this work provide an excellent starting point for further studies that will help to understand the metabolic effects of fish oil and TTA and will hopefully help to design dietary programs directed towards reduction of the prevalence of metabolic syndrome and associated diseases.

[1]  Y. Matsuki,et al.  Role of Krüppel-like factor 15 in PEPCK gene expression in the liver. , 2005, Biochemical and biophysical research communications.

[2]  L. Madsen,et al.  Modulation of rat liver apolipoprotein gene expression and serum lipid levels by tetradecylthioacetic acid (TTA) via PPARalpha activation. , 1999, Journal of lipid research.

[3]  K. Tronstad,et al.  Metabolic effects of thia fatty acids , 2002, Current opinion in lipidology.

[4]  A. Orr,et al.  Mitochondrial Complex II Can Generate Reactive Oxygen Species at High Rates in Both the Forward and Reverse Reactions* , 2012, The Journal of Biological Chemistry.

[5]  E. Nordhoff,et al.  Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry. , 1999, Journal of mass spectrometry : JMS.

[6]  C. Benedict,et al.  Influence of dietary fish oil on mitochondrial function and response to ischemia. , 1992, The American journal of physiology.

[7]  M. Mann,et al.  Universal sample preparation method for proteome analysis , 2009, Nature Methods.

[8]  J. Bremer The biochemistry of hypo- and hyperlipidemic fatty acid derivatives: metabolism and metabolic effects. , 2001, Progress in lipid research.

[9]  K. Zatloukal,et al.  Lessons from Keratin 18 Knockout Mice: Formation of Novel Keratin Filaments, Secondary Loss of Keratin 7 and Accumulation of Liver-specific Keratin 8-Positive Aggregates , 1998, The Journal of cell biology.

[10]  K. Tronstad,et al.  Changed energy state and increased mitochondrial beta-oxidation rate in liver of rats associated with lowered proton electrochemical potential and stimulated uncoupling protein 2 (UCP-2) expression: evidence for peroxisome proliferator-activated receptor-alpha independent induction of UCP-2 expressi , 2003, The Journal of biological chemistry.

[11]  D. Jump N-3 polyunsaturated fatty acid regulation of hepatic gene transcription , 2008, Current opinion in lipidology.

[12]  F. Reisinger,et al.  Database on Demand – An online tool for the custom generation of FASTA‐formatted sequence databases , 2009, Proteomics.

[13]  J. Peters,et al.  Evidence against the peroxisome proliferator-activated receptor alpha (PPARalpha) as the mediator for polyunsaturated fatty acid suppression of hepatic L-pyruvate kinase gene transcription. , 2000, Journal of lipid research.

[14]  Martin Eisenacher,et al.  Peek a peak: a glance at statistics for quantitative label-free proteomics , 2010, Expert review of proteomics.

[15]  M. Gorenstein,et al.  The detection, correlation, and comparison of peptide precursor and product ions from data independent LC‐MS with data dependant LC‐MS/MS , 2009, Proteomics.

[16]  J. Peters,et al.  Polyunsaturated Fatty Acid Suppression of Hepatic Fatty Acid Synthase and S14 Gene Expression Does Not Require Peroxisome Proliferator-activated Receptor α* , 1997, The Journal of Biological Chemistry.

[17]  J. Bremer,et al.  Acylcarnitine formation and fatty acid oxidation in hepatocytes from rats treated with tetradecylthioacetic acid (a 3-thia fatty acid). , 1993, Biochimica et biophysica acta.

[18]  Susanne Mandrup,et al.  PPARs: fatty acid sensors controlling metabolism. , 2012, Seminars in cell & developmental biology.

[19]  D. Hochstrasser,et al.  Two‐dimensional gel electrophoresis for proteome projects: The effects of protein hydrophobicity and copy number , 1998, Electrophoresis.

[20]  R. Berge,et al.  Tetradecylthioacetic acid attenuates dyslipidaemia in male patients with type 2 diabetes mellitus, possibly by dual PPAR‐α/δ activation and increased mitochondrial fatty acid oxidation , 2009, Diabetes, obesity & metabolism.

[21]  Hege Wergedahl,et al.  Fish oil and 3-thia fatty acid have additive effects on lipid metabolism but antagonistic effects on oxidative damage when fed to rats for 50 weeks. , 2012, The Journal of nutritional biochemistry.

[22]  L. Demaison,et al.  Influence of the phospholipid n-6/n-3 polyunsaturated fatty acid ratio on the mitochondrial oxidative metabolism before and after myocardial ischemia. , 1994, Biochimica et biophysica acta.

[23]  A. Petrescu,et al.  Peroxisome Proliferator-activated Receptor α Interacts with High Affinity and Is Conformationally Responsive to Endogenous Ligands* , 2005, Journal of Biological Chemistry.

[24]  S. Innis,et al.  Identification of novel protein targets regulated by maternal dietary fatty acid composition in neonatal rat liver. , 2009, Journal of proteomics.

[25]  D. Edmondson,et al.  Mechanism of the reductive activation of succinate dehydrogenase. , 1975, The Journal of biological chemistry.

[26]  L. Sanderson,et al.  Peroxisome Proliferator-Activated Receptor β/δ (PPARβ/δ) but Not PPARα Serves as a Plasma Free Fatty Acid Sensor in Liver , 2009, Molecular and Cellular Biology.

[27]  T. Pineau,et al.  Fenofibrate modifies transaminase gene expression via a peroxisome proliferator activated receptor alpha-dependent pathway. , 1998, Toxicology letters.

[28]  Hyoun-ju Kim,et al.  Effects of dietary fat energy restriction and fish oil feeding on hepatic metabolic abnormalities and insulin resistance in KK mice with high-fat diet-induced obesity. , 2013, The Journal of nutritional biochemistry.

[29]  T. Kawaguchi,et al.  Mutation in keratin 18 induces mitochondrial fragmentation in liver-derived epithelial cells. , 2008, Biochemical and biophysical research communications.

[30]  Jun Ren,et al.  Peroxisome proliferator-activated receptor (PPAR) in metabolic syndrome and type 2 diabetes mellitus. , 2007, Current diabetes reviews.

[31]  R. Berge,et al.  Tetradecylthioacetic acid inhibits the oxidative modification of low density lipoprotein and 8-hydroxydeoxyguanosine formation in vitro. , 1997, Arteriosclerosis, thrombosis, and vascular biology.

[32]  Yuquan Wei,et al.  Keratins modulate the shape and function of hepatocyte mitochondria: a mechanism for protection from apoptosis , 2009, Journal of Cell Science.

[33]  L. Nagy,et al.  PPARs are a unique set of fatty acid regulated transcription factors controlling both lipid metabolism and inflammation☆ , 2011, Biochimica et biophysica acta.

[34]  Saptarsi M. Haldar,et al.  Kruppel-like factor 15 regulates skeletal muscle lipid flux and exercise adaptation , 2012, Proceedings of the National Academy of Sciences.

[35]  M. Brand,et al.  Hydrogen peroxide efflux from muscle mitochondria underestimates matrix superoxide production – a correction using glutathione depletion , 2010, The FEBS journal.

[36]  M. Kito,et al.  Mitochondrial function in rats is affected by modification of membrane phospholipids with dietary sardine oil. , 1988, The Journal of nutrition.

[37]  Sabine Bahn,et al.  Quantification of proteins using data‐independent analysis (MSE) in simple andcomplex samples: A systematic evaluation , 2011, Proteomics.

[38]  C. Drevon,et al.  Dietary supplementation of tetradecylthioacetic acid increases feed intake but reduces body weight gain and adipose depot sizes in rats fed on high‐fat diets , 2009, Diabetes, obesity & metabolism.

[39]  K. Kristiansen,et al.  Tetradecylthioacetic acid inhibits growth of rat glioma cells ex vivo and in vivo via PPAR-dependent and PPAR-independent pathways. , 2001, Carcinogenesis.

[40]  W. Wahli,et al.  The peroxisome proliferator‐activated receptor α regulates amino acid metabolism , 2001, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[41]  K. Tronstad,et al.  The metabolic syndrome and the hepatic fatty acid drainage hypothesis. , 2005, Biochimie.

[42]  Hui-jie Zhang,et al.  Ping-tang Recipe (平糖方) improves insulin resistance and attenuates hepatic steatosis in high-fat diet-induced obese rats , 2012, Chinese Journal of Integrative Medicine.

[43]  J. Hirst,et al.  The mechanism of superoxide production by NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[44]  H. Tinsley,et al.  Chronic exposure to a high-fat diet induces hepatic steatosis, impairs nitric oxide bioavailability, and modifies the mitochondrial proteome in mice. , 2011, Antioxidants & redox signaling.

[45]  U. Brandt,et al.  The Mechanism of Mitochondrial Superoxide Production by the Cytochrome bc1 Complex* , 2008, Journal of Biological Chemistry.

[46]  J. Bremer,et al.  Induction of peroxisomal beta-oxidation in 7800 C1 Morris hepatoma cells in steady state by fatty acids and fatty acid analogues. , 1989, Biochimica et biophysica acta.

[47]  J. Park,et al.  Differential expression of intermediate filaments in the process of developing hepatic steatosis , 2011, Proteomics.

[48]  Michael Müller,et al.  Peroxisome Proliferator-Activated Receptor Alpha Target Genes , 2010, PPAR research.

[49]  H M Roche,et al.  Effect of long-chain n-3 polyunsaturated fatty acids on fasting and postprandial triacylglycerol metabolism. , 2000, The American journal of clinical nutrition.

[50]  L. Mandarino,et al.  High Fat Diet-Induced Changes in Hepatic Protein Abundance in Mice , 2012, Journal of proteomics & bioinformatics.

[51]  M. Gorenstein,et al.  Absolute Quantification of Proteins by LCMSE , 2006, Molecular & Cellular Proteomics.

[52]  E. Nelson,et al.  Clinical Overview of Algal-Docosahexaenoic Acid: Effects on Triglyceride Levels and Other Cardiovascular Risk Factors , 2009, American journal of therapeutics.

[53]  M. Brand,et al.  The Mechanism of Superoxide Production by the Antimycin-inhibited Mitochondrial Q-cycle* , 2011, The Journal of Biological Chemistry.

[54]  K. Kristiansen,et al.  Tetradecylthioacetic acid prevents high fat diet induced adiposity and insulin resistance. , 2002, Journal of lipid research.

[55]  G. H. Thoresen,et al.  The Role of PPARα Activation in Liver and Muscle , 2010, PPAR research.

[56]  J. Yun,et al.  Time-dependent hepatic proteome analysis in lean and diet-induced obese mice. , 2011, Journal of microbiology and biotechnology.

[57]  Anthony C. Smith,et al.  MitoMiner, an Integrated Database for the Storage and Analysis of Mitochondrial Proteomics Data , 2009, Molecular & Cellular Proteomics.

[58]  I. Tack,et al.  Pharmacological blockade of B2-kinin receptor reduces renal protective effect of angiotensin-converting enzyme inhibition in db/db mice model. , 2008, American journal of physiology. Renal physiology.

[59]  D. Hochstrasser,et al.  The dynamic range of protein expression: A challenge for proteomic research , 2000, Electrophoresis.

[60]  S. Serini,et al.  Dietary n-3 polyunsaturated fatty acids and the paradox of their health benefits and potential harmful effects. , 2011, Chemical research in toxicology.

[61]  K. Kristiansen,et al.  Modulation of keratinocyte gene expression and differentiation by PPAR-selective ligands and tetradecylthioacetic acid. , 2001, The Journal of investigative dermatology.

[62]  L. B. Larsen,et al.  Impact of high-fat and high-carbohydrate diets on liver metabolism studied in a rat model with a systems biology approach. , 2012, Journal of agricultural and food chemistry.

[63]  Rolando De la Cruz,et al.  Allelic Variants of Melanocortin 3 Receptor Gene (MC3R) and Weight Loss in Obesity: A Randomised Trial of Hypo-Energetic High- versus Low-Fat Diets , 2011, PloS one.

[64]  J. Tardif,et al.  Does membrane fatty acid composition modulate mitochondrial functions and their thermal sensitivities? , 2008, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

[65]  T. Ueland,et al.  Antiinflammatory Effects of Tetradecylthioacetic Acid Involve Both Peroxisome Proliferator–Activated Receptor α–Dependent and –Independent Pathways , 2005, Arteriosclerosis, thrombosis, and vascular biology.

[66]  W. Connor,et al.  Importance of n-3 fatty acids in health and disease. , 2000, The American journal of clinical nutrition.

[67]  B. Bjørndal,et al.  Tetradecylthioacetic Acid Increases Hepatic Mitochondrial β-Oxidation and Alters Fatty Acid Composition in a Mouse Model of Chronic Inflammation , 2011, Lipids.

[68]  M. Lazar,et al.  Forming functional fat: a growing understanding of adipocyte differentiation , 2011, Nature Reviews Molecular Cell Biology.

[69]  M. Gorenstein,et al.  Quantitative proteomic analysis by accurate mass retention time pairs. , 2005, Analytical chemistry.

[70]  J. Seong,et al.  Proteomic analysis of diet‐induced hypercholesterolemic mice , 2004, Proteomics.

[71]  Hannelore Daniel,et al.  Alterations in hepatic one-carbon metabolism and related pathways following a high-fat dietary intervention. , 2011, Physiological genomics.

[72]  D. Newmeyer,et al.  Mitochondria Releasing Power for Life and Unleashing the Machineries of Death , 2003, Cell.

[73]  L. Jenski,et al.  Effect of docosahexaenoic acid on mouse mitochondrial membrane properties , 1997, Lipids.

[74]  Lennart Martens,et al.  DBToolkit: processing protein databases for peptide-centric proteomics , 2005, Bioinform..

[75]  L. Madsen,et al.  Hypolipidemic 3-Thia Fatty Acids , 2002 .

[76]  G. Taubes Insulin resistance. Prosperity's plague. , 2009, Science.

[77]  Matthias Berth,et al.  The state of the art in the analysis of two-dimensional gel electrophoresis images , 2007, Applied Microbiology and Biotechnology.

[78]  Israel Steinfeld,et al.  BMC Bioinformatics BioMed Central , 2008 .

[79]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[80]  J. Després,et al.  Abdominal obesity and metabolic syndrome , 2006, Nature.

[81]  R. Berge,et al.  Impact of cytochrome P450 system on lipoprotein metabolism. Effect of abnormal fatty acids (3-thia fatty acids). , 1994, Pharmacology & therapeutics.

[82]  M. Portero-Otín,et al.  Effect of the degree of fatty acid unsaturation of rat heart mitochondria on their rates of H2O2 production and lipid and protein oxidative damage , 2001, Mechanisms of Ageing and Development.

[83]  J. Bonventre,et al.  Incorporation of marine lipids into mitochondrial membranes increases susceptibility to damage by calcium and reactive oxygen species: evidence for enhanced activation of phospholipase A2 in mitochondria enriched with n-3 fatty acids. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[84]  R. Berge,et al.  Lipid‐lowering and anti‐inflammatory effects of tetradecylthioacetic acid in HIV‐infected patients on highly active antiretroviral therapy , 2004, European journal of clinical investigation.

[85]  H. Sampath,et al.  Polyunsaturated fatty acid regulation of genes of lipid metabolism. , 2005, Annual review of nutrition.

[86]  T. Rabilloud,et al.  Two-dimensional gel electrophoresis in proteomics: Past, present and future. , 2010, Journal of proteomics.

[87]  Graham W. Horgan,et al.  Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: a proteomic and biomarker network analysis. , 2011, Molecular nutrition & food research.

[88]  S. Grundy,et al.  The metabolic syndrome. , 2008, Endocrine reviews.

[89]  Dan Golick,et al.  Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures , 2009, Proteomics.

[90]  R. K. Bright,et al.  Evidence of simian virus 40 exposure in a colony of captive baboons. , 2008, Virology.

[91]  L. Madsen,et al.  Mitochondrial 3-hydroxy-3-methylglutaryl coenzyme A synthase and carnitine palmitoyltransferase II as potential control sites for ketogenesis during mitochondrion and peroxisome proliferation. , 1999, Biochemical pharmacology.

[92]  M. Portero-Otín,et al.  Modification of the longevity-related degree of fatty acid unsaturation modulates oxidative damage to proteins and mitochondrial DNA in liver and brain , 2004, Experimental Gerontology.