Fast Klebsiella pneumoniae typing for outbreak reconstruction: an highly discriminatory HRM protocol on wzi capsular gene developed using EasyPrimer tool
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Matteo Perini | Aurora Piazza | Simona Panelli | Gian Vincenzo Zuccotti | Francesco Comandatore | Claudio Farina | Domenico Di Carlo | Marta Corbella | Floriana Gona | Francesca Vailati | Piero Marone | Daniela M. Cirillo | G. Zuccotti | D. Cirillo | F. Comandatore | P. Marone | C. Farina | A. Piazza | M. Corbella | F. Vailati | F. Gona | S. Panelli | Matteo Perini
[1] F. Chiroleu,et al. Pseudomonas aeruginosa Outbreak Linked to Mineral Water Bottles in a Neonatal Intensive Care Unit: Fast Typing by Use of High-Resolution Melting Analysis of a Variable-Number Tandem-Repeat Locus , 2010, Journal of Clinical Microbiology.
[2] Martin C. J. Maiden,et al. Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens , 2001, Bioinform..
[3] S. Tong,et al. Differing epidemiology of two major healthcare-associated meticillin-resistant Staphylococcus aureus clones. , 2016, The Journal of hospital infection.
[4] G. Ripabelli,et al. High Resolution Melting as a rapid, reliable, accurate and cost-effective emerging tool for genotyping pathogenic bacteria and enhancing molecular epidemiological surveillance: a comprehensive review of the literature. , 2017, Annali di igiene : medicina preventiva e di comunita.
[5] R. Zadoks,et al. An update on environmental mastitis: Challenging perceptions , 2018, Transboundary and emerging diseases.
[6] R. Kunert,et al. Improved Protocol for Rapid Identification of Certain Spa Types Using High Resolution Melting Curve Analysis , 2015, PLoS ONE.
[7] K. Bergh,et al. Rapid discrimination of Staphylococcus epidermidis genotypes in a routine clinical microbiological laboratory using single nucleotide polymorphisms in housekeeping genes , 2018, Journal of medical microbiology.
[8] Subhash Todi,et al. Guidelines for prevention of hospital acquired infections , 2014, Indian journal of critical care medicine : peer-reviewed, official publication of Indian Society of Critical Care Medicine.
[9] Robert A. Edwards,et al. PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies , 2012, Nucleic acids research.
[10] Erin P. Price,et al. Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants , 2007, BMC Bioinformatics.
[11] K. Holt,et al. Identification of Klebsiella capsule synthesis loci from whole genome data , 2016, bioRxiv.
[12] S. Salzberg,et al. Alignment of whole genomes. , 1999, Nucleic acids research.
[13] M. Landini,et al. Genomic Epidemiology of Klebsiella pneumoniae in Italy and Novel Insights into the Origin and Global Evolution of Its Resistance to Carbapenem Antibiotics , 2014, Antimicrobial Agents and Chemotherapy.
[14] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[15] S. Tong,et al. Minim Typing – A Rapid and Low Cost MLST Based Typing Tool for Klebsiella pneumoniae , 2012, PloS one.
[16] D. Li,et al. The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in Southern China , 2017, Transboundary and emerging diseases.
[17] K. Chua,et al. One-step species-specific high resolution melting analysis for nosocomial bacteria detection. , 2014, Journal of microbiological methods.
[18] A Nutman,et al. How to: molecular investigation of a hospital outbreak. , 2019, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[19] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[20] P. Annear. A comprehensive review of the literature on health equity funds in Cambodia 2001-2010 and annotated bibliography , 2010 .