Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy

Nuclear export of mRNA is a key transport process in eukaryotic cells. To investigate it, we labeled native mRNP particles in living Chironomus tentans salivary gland cells with fluorescent hrp36, the hnRNP A1 homolog, and the nuclear envelope by fluorescent NTF2. Using light sheet microscopy, we traced single native mRNA particles across the nuclear envelope. The particles were observed to often probe nuclear pore complexes (NPC) at their nuclear face, and in only 25% of the cases yielded actual export. The complete export process took between 65 ms up to several seconds. A rate-limiting step was observed, which could be assigned to the nuclear basket of the pore and might correspond to a repositioning and unfolding of mRNPs before the actual translocation. Analysis of single fluorescent Dbp5 molecules, the RNA helicase essential for mRNA export, revealed that Dbp5 most often approached the cytoplasmic face of the NPC, and exhibited a binding duration of approximately 55 ms. Our results have allowed a refinement of the current models for mRNA export.

[1]  Robert H. Singer,et al.  Nuclear export dynamics of RNA–protein complexes , 2011, Nature.

[2]  C. Guthrie,et al.  Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: a lively new paradigm for DEAD-box proteins. , 2011, Genes & development.

[3]  Andrew W. Folkmann,et al.  The Dbp5 cycle at the nuclear pore complex during mRNA export I: dbp5 mutants with defects in RNA binding and ATP hydrolysis define key steps for Nup159 and Gle1. , 2011, Genes & development.

[4]  J. Berger,et al.  A conserved mechanism of DEAD-box ATPase activation by nucleoporins and IP6 in mRNA export , 2011, Nature.

[5]  L. Wieslander,et al.  Nucleocytoplasmic mRNP export is an integral part of mRNP biogenesis , 2010, Chromosoma.

[6]  M. Stewart Nuclear export of mRNA. , 2010, Trends in biochemical sciences.

[7]  R. Singer,et al.  In Vivo Imaging of Labelled Endogenous β-actin mRNA During Nucleocytoplasmic Transport , 2010, Nature.

[8]  Ulrich Kubitscheck,et al.  Light Sheet Microscopy for Single Molecule Tracking in Living Tissue , 2010, PloS one.

[9]  Alan R. Lowe,et al.  Selectivity Mechanism of the Nuclear Pore Complex Characterized by Single Cargo Tracking , 2010, Nature.

[10]  Y. Shav-Tal,et al.  Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells , 2010, Nature Cell Biology.

[11]  B. Daneholt,et al.  Exclusion of mRNPs and ribosomal particles from a thin zone beneath the nuclear envelope revealed upon inhibition of transport. , 2010, Experimental cell research.

[12]  A. Budd,et al.  Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure , 2009, The Journal of Biological Chemistry.

[13]  Sanjay Tyagi,et al.  Imaging intracellular RNA distribution and dynamics in living cells , 2009, Nature Methods.

[14]  G. Blobel,et al.  Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19 , 2009, Proceedings of the National Academy of Sciences.

[15]  C. Basquin,et al.  The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner , 2009, Nature Structural &Molecular Biology.

[16]  H. Leonhardt,et al.  Discontinuous movement of mRNP particles in nucleoplasmic regions devoid of chromatin , 2008, Proceedings of the National Academy of Sciences.

[17]  Uros Krzic,et al.  Light sheet‐based fluorescence microscopy: More dimensions, more photons, and less photodamage , 2008, HFSP journal.

[18]  T. Kues,et al.  Nuclear transport of single molecules , 2005, The Journal of cell biology.

[19]  F. Del Bene,et al.  Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy , 2004, Science.

[20]  Robert H Singer,et al.  Materials and Methods Som Text Figs. S1 to S8 References and Notes Dynamics of Single Mrnps in Nuclei of Living Cells , 2022 .

[21]  W. Webb,et al.  Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.

[22]  B. Daneholt,et al.  The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm , 2002, The EMBO journal.

[23]  B. Daneholt,et al.  Assembly and transport of a premessenger RNP particle , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[24]  C. Cole,et al.  Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1‐1 cells , 1999, The EMBO journal.

[25]  S. Masich,et al.  The intranuclear movement of Balbiani ring premessenger ribonucleoprotein particles. , 1999, Experimental cell research.

[26]  B. Séraphin,et al.  Dbp5, a DEAD‐box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p , 1999, The EMBO journal.

[27]  A. Beyer,et al.  Separable roles in vivo for the two RNA binding domains of Drosophila A1-hnRNP homolog. , 1998, RNA.

[28]  R Y Tsien,et al.  Specific covalent labeling of recombinant protein molecules inside live cells. , 1998, Science.

[29]  C. Akey,et al.  Active nuclear pore complexes in Chironomus: visualization of transporter configurations related to mRNP export. , 1998, Journal of cell science.

[30]  B. Daneholt A Look at Messenger RNP Moving through the Nuclear Pore , 1997, Cell.

[31]  E. Kiseleva,et al.  Identification of two RNA-binding proteins in Balbiani ring premessenger ribonucleoprotein granules and presence of these proteins in specific subsets of heterogeneous nuclear ribonucleoprotein particles , 1996, Molecular and cellular biology.

[32]  E. Kiseleva,et al.  A Pre-mRNA-Binding Protein Accompanies the RNA from the Gene through the Nuclear Pores and into Polysomes , 1996, Cell.

[33]  B. Daneholt,et al.  Translocation of a specific premessenger ribonucleoprotein particle through the nuclear pore studied with electron microscope tomography , 1992, Cell.

[34]  B. Daneholt,et al.  Characterization of active transcription units in Balbiani rings of chironomus tentans , 1979, Cell.

[35]  Michael D. Abràmoff,et al.  Image processing with ImageJ , 2004 .