The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences
暂无分享,去创建一个
J. Mar | J. Greally | F. Delahaye | A. Golden | Y. Zhao | N. Wijetunga | F. Einstein
[1] A. Feinberg,et al. Measuring cell-type specific differential methylation in human brain tissue , 2013, Genome Biology.
[2] Margaret R Karagas,et al. Blood-based profiles of DNA methylation predict the underlying distribution of cell types , 2013, Epigenetics.
[3] E. Dermitzakis,et al. Passive and active DNA methylation and the interplay with genetic variation in gene regulation , 2013, eLife.
[4] Devin C Koestler,et al. Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures , 2013, Statistical applications in genetics and molecular biology.
[5] Timothy E. Reddy,et al. Dynamic DNA methylation across diverse human cell lines and tissues , 2013, Genome research.
[6] Martin J. Aryee,et al. Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in Rheumatoid Arthritis , 2013, Nature Biotechnology.
[7] William Stafford Noble,et al. Unsupervised pattern discovery in human chromatin structure through genomic segmentation , 2012, Nature Methods.
[8] Gavin Giovannoni,et al. Inactive or moderately active human promoters are enriched for inter-individual epialleles , 2013, Genome Biology.
[9] Zohar Mukamel,et al. Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues , 2012, Nature Genetics.
[10] F. Holsboer,et al. The CpG island shore of the GLT‐1 gene acts as a methylation‐sensitive enhancer , 2012, Glia.
[11] J. Mill,et al. Stochastic Choice of Allelic Expression in Human Neural Stem Cells , 2012, Stem cells.
[12] Lei Wang,et al. A Novel Recursive Bayesian Learning-Based Method for the Efficient and Accurate Segmentation of Video With Dynamic Background , 2012, IEEE Transactions on Image Processing.
[13] Lee E. Edsall,et al. A map of the cis-regulatory sequences in the mouse genome , 2012, Nature.
[14] C. Seoighe,et al. Semi-supervised Nonnegative Matrix Factorization for gene expression deconvolution: a case study. , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[15] M. Robinson,et al. Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA , 2012, Genome research.
[16] Christoph Bock,et al. Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk , 2012, Genome research.
[17] Mukesh Verma,et al. Epigenome-Wide Association Studies (EWAS) in Cancer , 2012, Current genomics.
[18] Devin C. Koestler,et al. DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.
[19] H. Kitchener,et al. Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation , 2012, Genome Medicine.
[20] A. Feinberg,et al. Regulated Noise in the Epigenetic Landscape of Development and Disease , 2012, Cell.
[21] Kenneth P. Nephew,et al. The Influence of cis-Regulatory Elements on DNA Methylation Fidelity , 2012, PloS one.
[22] Robert J. Schmitz,et al. Epigenetic and epigenomic variation in Arabidopsis thaliana. , 2012, Trends in plant science.
[23] Jeffrey T Leek,et al. Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies. , 2012, International journal of epidemiology.
[24] Manolis Kellis,et al. ChromHMM: automating chromatin-state discovery and characterization , 2012, Nature Methods.
[25] Jennifer R Harris,et al. Extensive variation and low heritability of DNA methylation identified in a twin study. , 2011, Genome research.
[26] P. Scacheri,et al. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. , 2011, Genome research.
[27] Kevin M. Bowling,et al. Analysis of DNA Methylation in a Three-Generation Family Reveals Widespread Genetic Influence on Epigenetic Regulation , 2011, PLoS genetics.
[28] D. Balding,et al. Epigenome-wide association studies for common human diseases , 2011, Nature Reviews Genetics.
[29] A. Feinberg,et al. Increased methylation variation in epigenetic domains across cancer types , 2011, Nature Genetics.
[30] Frank Lyko,et al. Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging. , 2011, Blood.
[31] David I. K. Martin,et al. A Sustained Dietary Change Increases Epigenetic Variation in Isogenic Mice , 2011, PLoS genetics.
[32] Tim D. Spector,et al. A twin approach to unraveling epigenetics , 2011, Trends in genetics : TIG.
[33] Ryan A. Flynn,et al. A unique chromatin signature uncovers early developmental enhancers in humans , 2011, Nature.
[34] Joseph K. Pickrell,et al. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines , 2011, Genome Biology.
[35] R. Young,et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state , 2010, Proceedings of the National Academy of Sciences.
[36] David D. Smith,et al. Dual DNA Methylation Patterns in the CNS Reveal Developmentally Poised Chromatin and Monoallelic Expression of Critical Genes , 2010, PloS one.
[37] Dirk Schübeler,et al. Tackling the epigenome: challenges and opportunities for collaboration , 2010, Nature Biotechnology.
[38] Hein Putter,et al. Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology , 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[39] J. Greally,et al. Optimized design and data analysis of tag-based cytosine methylation assays , 2010, Genome Biology.
[40] A. Feinberg,et al. Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease , 2010, Proceedings of the National Academy of Sciences.
[41] Renaud Gaujoux,et al. A flexible R package for nonnegative matrix factorization , 2010, BMC Bioinformatics.
[42] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[43] T. Mikkelsen,et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.
[44] R. Doerge,et al. Epigenetic Natural Variation in Arabidopsis thaliana , 2007, PLoS biology.
[45] M. V. Velzen,et al. Self-organizing maps , 2007 .
[46] Sun-Chong Wang,et al. Intra- and interindividual epigenetic variation in human germ cells. , 2006, American journal of human genetics.
[47] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[48] Timo Malm,et al. Validation by analysis , 1998 .
[49] M. Cazzola,et al. CD34-positive cells: biology and clinical relevance. , 1995, Haematologica.
[50] Jeffrey H. Miller,et al. Mutagenic deamination of cytosine residues in DNA , 1980, Nature.
[51] J. Gerring. A case study , 2011, Technology and Society.
[52] M. Cazzola,et al. CD 34-POSITIVE CELLS : BIOLOGY AND CLINICAL RELEVANCE , 2022 .