RNA-sequencing analysis of shell gland shows differences in gene expression profile at two time-points of eggshell formation in laying chickens

[1]  Jérôme Galon,et al.  Comprehensive functional analysis of large lists of genes and proteins. , 2018, Journal of proteomics.

[2]  Shu‐Biao Wu,et al.  Reference gene selection for gene expression study in shell gland and spleen of laying hens challenged with infectious bronchitis virus , 2017, Scientific Reports.

[3]  M. Bain Composition and properties of eggshell , 2017 .

[4]  S. Samiullah,et al.  Effect of production system and flock age on eggshell and egg internal quality measurements , 2017, Poultry science.

[5]  D. Tan,et al.  Deterioration of eggshell quality in laying hens experimentally infected with H9N2 avian influenza virus , 2016, Veterinary Research.

[6]  B. Buitenhuis,et al.  RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations , 2016, BMC Genomics.

[7]  J. Estany,et al.  Investigating reference genes for quantitative real-time PCR analysis across four chicken tissues. , 2015, Gene.

[8]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[9]  V. Labas,et al.  Quantitative proteomics and bioinformatic analysis provide new insight into protein function during avian eggshell biomineralization. , 2015, Journal of proteomics.

[10]  A. Johnson Chapter 28 – Reproduction in the Female , 2015 .

[11]  Y. Mine,et al.  Ovocalyxin-36 is an effector protein modulating the production of proinflammatory mediators. , 2014, Veterinary immunology and immunopathology.

[12]  C. Hennequet-Antier,et al.  Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process , 2014, BMC Genomics.

[13]  F. Bazer,et al.  Recrudescence Mechanisms and Gene Expression Profile of the Reproductive Tracts from Chickens during the Molting Period , 2013, PloS one.

[14]  A. Dufour,et al.  Unraveling the role of KIAA1199, a novel endoplasmic reticulum protein, in cancer cell migration. , 2013, Journal of the National Cancer Institute.

[15]  Jae‐Chang Jung,et al.  Expression of matrix metalloproteinase-13 (MMP-13) in the testes of growing and adult chicken. , 2013, Acta histochemica.

[16]  J. Hou,et al.  Expression of TRPV6 and CaBP-D28k in the egg shell gland (uterus) during the oviposition cycle of the laying hen , 2013, British poultry science.

[17]  Bernhard Mlecnik,et al.  CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data , 2013, Bioinform..

[18]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[19]  V. Jonchère,et al.  Identification of uterine ion transporters for mineralisation precursors of the avian eggshell , 2012, BMC Physiology.

[20]  F. Bazer,et al.  Differential expression of secreted phosphoprotein 1 in response to estradiol-17β and in ovarian tumors in chickens. , 2012, Biochemical and biophysical research communications.

[21]  F. Bazer,et al.  Cell-Specific and Temporal Aspects of Gene Expression in the Chicken Oviduct at Different Stages of the Laying Cycle1 , 2012, Biology of reproduction.

[22]  F. Bazer,et al.  Chicken Pleiotrophin: Regulation of Tissue Specific Expression by Estrogen in the Oviduct and Distinct Expression Pattern in the Ovarian Carcinomas , 2012, PloS one.

[23]  B. Bany,et al.  Angiopoietin-like gene expression in the mouse uterus during implantation and in response to steroids , 2012, Cell and Tissue Research.

[24]  M. McKee,et al.  The eggshell: structure, composition and mineralization. , 2012, Frontiers in bioscience.

[25]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[26]  V. Jonchère,et al.  Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg , 2010, BMC Genomics.

[27]  V. Beneš,et al.  The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. , 2009, Clinical chemistry.

[28]  Pornpimol Charoentong,et al.  ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks , 2009, Bioinform..

[29]  S. Hirohashi,et al.  Frequent inactivation of a putative tumor suppressor, angiopoietin-like protein 2, in ovarian cancer. , 2008, Cancer research.

[30]  M. McKee,et al.  Colloidal-gold Immunocytochemical Localization of Osteopontin in Avian Eggshell Gland and Eggshell , 2008, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[31]  Michael L. Creech,et al.  Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.

[32]  D. Lai,et al.  Angiopoietin‐like protein 1 expression is related to intermuscular connective tissue and cartilage development , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.

[33]  T. Spencer,et al.  WNTs in the ovine uterus: potential regulation of periimplantation ovine conceptus development. , 2007, Endocrinology.

[34]  A. Vignal,et al.  Cloning of Ovocalyxin-36, a Novel Chicken Eggshell Protein Related to Lipopolysaccharide-binding Proteins, Bactericidal Permeability-increasing Proteins, and Plunc Family Proteins* , 2007, Journal of Biological Chemistry.

[35]  A. Eckhardt,et al.  Proteins of Insoluble Matrix of Avian (Gallus Gallus) Eggshell , 2007, Connective tissue research.

[36]  G. Mortier,et al.  qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data , 2007, Genome Biology.

[37]  Jesper V Olsen,et al.  Proteomic analysis of the acid‐soluble organic matrix of the chicken calcified eggshell layer , 2006, Proteomics.

[38]  Yi Ping Li,et al.  Evaluation of the suitability of six host genes as internal control in real-time RT-PCR assays in chicken embryo cell cultures infected with infectious bursal disease virus. , 2005, Veterinary microbiology.

[39]  J. García‐Ruiz,et al.  Iconography : Avian eggshell mineralization: biochemical and functional characterization of matrix proteins , 2004 .

[40]  V. Ganapathy,et al.  Functional features and genomic organization of mouse NaCT, a sodium-coupled transporter for tricarboxylic acid cycle intermediates. , 2004, The Biochemical journal.

[41]  International Human Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution , 2004 .

[42]  A. Eckhardt,et al.  Insoluble eggshell matrix proteins – their peptide mapping and partial characterization by capillary electrophoresis and high‐performance liquid chromatography , 2003, Electrophoresis.

[43]  D. Ginzinger Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. , 2002, Experimental hematology.

[44]  M. McKee,et al.  Ovocalyxin-32, a Novel Chicken Eggshell Matrix Protein , 2001, The Journal of Biological Chemistry.

[45]  M. Pfaffl,et al.  A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.

[46]  R. Rasmussen Quantification on the LightCycler , 2001 .

[47]  F. Siedler,et al.  The amino sequence of ovocleidin 17, a major protein of the avian eggshell calcified layer , 1999 .

[48]  M. Pines,et al.  Regulation of osteopontin gene expression during egg shell formation in the laying hen by mechanical strain. , 1998, Matrix biology : journal of the International Society for Matrix Biology.

[49]  J. Arias,et al.  Eggshells are shaped by a precise spatio-temporal arrangement of sequentially deposited macromolecules. , 1997, Matrix biology : journal of the International Society for Matrix Biology.

[50]  A. Heuer,et al.  Microstructure of matrix and mineral components of eggshells from White Leghorn chickens (Gallus gallus) , 1996, Journal of morphology.

[51]  M. Pines,et al.  Involvement of osteopontin in egg shell formation in the laying chicken. , 1995, Matrix biology : journal of the International Society for Matrix Biology.

[52]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[53]  A. D. Mills,et al.  Whitening of brown-shelled eggs: mineral composition of uterine fluid and rate of protoporphyrin deposition. , 1991, Poultry science.

[54]  J. Arias,et al.  Collagens of the chicken eggshell membranes. , 1991, Connective tissue research.

[55]  D. Lawson,et al.  Differential regulation of calbindin-D28K mRNA in the intestine and eggshell gland of the laying hen. , 1990, Journal of molecular endocrinology.

[56]  R. Bouillon,et al.  Increases in calbindin D 28K mRNA in the uterus of the domestic fowl induced by sexual maturity and shell formation. , 1989, General and comparative endocrinology.

[57]  Y. Nys Relationships between age, shell quality and individual rate and duration of shell formation in domestic hens , 1986 .

[58]  A. Johnson Reproduction in the Female , 1986 .

[59]  R. Stern,et al.  Collagen in the egg shell membranes of the hen. , 1984, Developmental biology.

[60]  D. Wolfenson,et al.  Responses of the reproductive vascular system during the egg-formation cycle of unanaesthetised laying hens. , 1982, British poultry science.

[61]  E. D. Harris,et al.  Localization of lysyl oxidase in hen oviduct: implications in egg shell membrane formation and composition. , 1980, Science.

[62]  W. Eastin,et al.  On the mechanism of calcium secretion in the avian shell gland (uterus). , 1978, Biology of reproduction.

[63]  W. Eastin,et al.  On the control of calcium secretion in the avian shell gland (uterus). , 1978, Biology of reproduction.

[64]  H. G. Vevers,et al.  A survey of avian eggshell pigments. , 1976, Comparative biochemistry and physiology. B, Comparative biochemistry.

[65]  D. V. Vadehra,et al.  Chemical composition of the cuticle, and the inner and outer shell membranes from eggs of Gallus gallus. , 1974, Comparative biochemistry and physiology. B, Comparative biochemistry.

[66]  D. V. Vadehra,et al.  Lipid composition of the egg exteriors of the chicken (Gallus gallus). , 1970, Comparative biochemistry and physiology.

[67]  D. V. Vadehra,et al.  Fatty acid composition of the egg exterior structures of Gallus gallus , 1970 .

[68]  J. Baker,et al.  A study of the organic material of hen's-egg shell. , 1962, The Biochemical journal.

[69]  K. Simkiss,et al.  A histochemical study of the organic matrix of hen egg-shells. , 1957 .