Looking at the proteases from a simple perspective

Proteases have received enormous interest from the research and medical communities because of their significant roles in several human diseases. Some examples include the involvement of thrombin in thrombosis, HIV‐1 protease in Acquired Immune Deficiency Syndrome, cruzain in Trypanosoma cruzi infection, and membrane‐type 1 matrix metalloproteinase in tumor invasion and metastasis. Many efforts has been undertaken to design effective inhibitors featuring potent inhibitory activity, specificity, and metabolic stability to those proteases involved in such pathologies. Protease inhibitors usually target the active site, but some of them act by other inhibitory mechanisms. The understanding of the structure‐function relationships of proteases and inhibitors has an impact on new inhibitor drugs designing. In this paper, the structures of four proteases (thrombin, HIV‐protease, cruzain, and a matrix metalloproteinase) are briefly reviewed, and used as examples of the importance of proteases for the development of new treatment strategies, leading to a longer and healthier life. Copyright © 2011 John Wiley & Sons, Ltd.

[1]  Charles Q. Choi Cloning of a Human , 2010 .

[2]  B. Schmidt,et al.  Serine proteases and protease-activated receptor 2-dependent allodynia: A novel cancer pain pathway , 2010, PAIN®.

[3]  E. Di Cera,et al.  Crystal Structure of Thrombin Bound to the Uncleaved Extracellular Fragment of PAR1* , 2010, The Journal of Biological Chemistry.

[4]  Xing-Jie Liang,et al.  Therapeutic strategies underpinning the development of novel techniques for the treatment of HIV infection. , 2010, Drug discovery today.

[5]  Y. Sham,et al.  Design, asymmetric synthesis, and evaluation of pseudosymmetric sulfoximine inhibitors against HIV-1 protease. , 2010, Bioorganic & medicinal chemistry.

[6]  Y. Utkin,et al.  A new type of thrombin inhibitor, noncytotoxic phospholipase A2, from the Naja haje cobra venom. , 2010, Toxicon : official journal of the International Society on Toxinology.

[7]  D. Chaplin,et al.  Design, synthesis, and biological evaluation of potent thiosemicarbazone based cathepsin L inhibitors , 2010, Bioorganic & Medicinal Chemistry Letters.

[8]  C. Yi,et al.  Molecular insight into the interaction mechanisms of inhibitors BEC and BEG with HIV-1 protease by using MM-PBSA method and molecular dynamics simulation , 2009 .

[9]  M. G. Albuquerque,et al.  3D-QSAR CoMFA/CoMSIA models based on theoretical active conformers of HOE/BAY-793 analogs derived from HIV-1 protease inhibitor complexes. , 2009, European journal of medicinal chemistry.

[10]  P. Arora,et al.  Evaluation of triazolamers as active site inhibitors of HIV-1 protease. , 2009, Bioorganic & medicinal chemistry letters.

[11]  E. Di Cera,et al.  Mutant N143P Reveals How Na+ Activates Thrombin* , 2009, The Journal of Biological Chemistry.

[12]  M. Hattori,et al.  Synthesis and evaluation of A-seco type triterpenoids for anti-HIV-1protease activity. , 2009, European journal of medicinal chemistry.

[13]  L. Wood,et al.  The nutrigenomics of asthma: molecular mechanisms of airway neutrophilia following dietary antioxidant withdrawal. , 2009, Omics : a journal of integrative biology.

[14]  R. Gurny,et al.  Thrombin-sensitive photodynamic agents: a novel strategy for selective synovectomy in rheumatoid arthritis. , 2009, Journal of controlled release : official journal of the Controlled Release Society.

[15]  T. Lecompte,et al.  Les anticoagulants inhibiteurs directs de la thrombine , 2009 .

[16]  N. Vergnolle Protease-activated receptors as drug targets in inflammation and pain. , 2009, Pharmacology & therapeutics.

[17]  Glaucius Oliva,et al.  Quantitative structure-activity relationships for a series of inhibitors of cruzain from Trypanosoma cruzi: molecular modeling, CoMFA and CoMSIA studies. , 2009, Journal of molecular graphics & modelling.

[18]  G. Klebe,et al.  More than a simple lipophilic contact: a detailed thermodynamic analysis of nonbasic residues in the s1 pocket of thrombin. , 2009, Journal of molecular biology.

[19]  M. O’Donnell,et al.  New anticoagulants for atrial fibrillation. , 2009, Seminars in thrombosis and hemostasis.

[20]  N. Rosencher,et al.  Should new oral anticoagulants replace low-molecular-weight heparin for thromboprophylaxis in orthopaedic surgery? , 2009, Archives of cardiovascular diseases.

[21]  Yuchen Cao,et al.  Synthesis of hydroxypyrone- and hydroxythiopyrone-based matrix metalloproteinase inhibitors: developing a structure-activity relationship. , 2009, Bioorganic & medicinal chemistry letters.

[22]  E. Vogler,et al.  Contact activation of blood-plasma coagulation. , 2009, Biomaterials.

[23]  I. Wakabayashi,et al.  Sensitivity of thrombin-induced platelet aggregation to inhibition by ethanol. , 2009, Clinica chimica acta; international journal of clinical chemistry.

[24]  H. Kräusslich,et al.  Gag Mutations Strongly Contribute to HIV-1 Resistance to Protease Inhibitors in Highly Drug-Experienced Patients besides Compensating for Fitness Loss , 2009, PLoS pathogens.

[25]  Rebecca Page,et al.  Crystal structures of protein phosphatase-1 bound to nodularin-R and tautomycin: a novel scaffold for structure-based drug design of serine/threonine phosphatase inhibitors. , 2009, Journal of molecular biology.

[26]  N. Zanatta,et al.  Convergent synthesis and cruzain inhibitory activity of novel 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidines. , 2008, Bioorganic & medicinal chemistry.

[27]  P. Little,et al.  Thrombin regulates vascular smooth muscle cell proteoglycan synthesis via PAR-1 and multiple downstream signalling pathways. , 2008, Thrombosis research.

[28]  A. Poyarkov,et al.  Influence of Aromatic and Aliphatic Moieties on Thrombin Inhibitors Potency , 2008, The open biochemistry journal.

[29]  Jana Václavíková,et al.  Enzymatic and structural analysis of the I47A mutation contributing to the reduced susceptibility to HIV protease inhibitor lopinavir , 2008, Protein science : a publication of the Protein Society.

[30]  Gennady M Verkhivker,et al.  Atomistic simulations of the HIV-1 protease folding inhibition. , 2008, Biophysical journal.

[31]  Celia A Schiffer,et al.  Resilience to resistance of HIV-1 protease inhibitors: profile of darunavir. , 2008, AIDS reviews.

[32]  Gavin C. Jones,et al.  The role of proteases in pathologies of the synovial joint. , 2008, The international journal of biochemistry & cell biology.

[33]  S. Gibson,et al.  Lysophosphatidic acid (LPA) induces the expression of VEGF leading to protection against apoptosis in B-cell derived malignancies. , 2008, Cellular signalling.

[34]  J. McKerrow,et al.  Identification of a new class of nonpeptidic inhibitors of cruzain. , 2008, Journal of the American Chemical Society.

[35]  E. Nutescu,et al.  New anticoagulant agents: direct thrombin inhibitors. , 2008, Cardiology clinics.

[36]  E. Freire,et al.  Inhibition of HIV‐2 Protease by HIV‐1 Protease Inhibitors in Clinical Use , 2008, Chemical biology & drug design.

[37]  B. Annabi,et al.  Tetra- and hexavalent mannosides inhibit the pro-apoptotic, antiproliferative and cell surface clustering effects of concanavalin-A: impact on MT1-MMP functions in marrow-derived mesenchymal stromal cells. , 2007, Glycobiology.

[38]  V. Hornak,et al.  Targeting structural flexibility in HIV-1 protease inhibitor binding. , 2007, Drug discovery today.

[39]  S. Diamond Methods for mapping protease specificity. , 2007, Current opinion in chemical biology.

[40]  Markus G Grütter,et al.  Opportunities for structure-based design of protease-directed drugs. , 2006, Current opinion in structural biology.

[41]  C. Alviano,et al.  Secretory aspartyl peptidase activity from mycelia of the human fungal pathogen Fonsecaea pedrosoi: effect of HIV aspartyl proteolytic inhibitors. , 2006, Research in microbiology.

[42]  Ilya Raskin,et al.  Protease inhibitors and their peptidomimetic derivatives as potential drugs , 2006, Pharmacology & Therapeutics.

[43]  A. Molla,et al.  Synthesis, antiviral activity, and pharmacokinetic evaluation of P3 pyridylmethyl analogs of oximinoarylsulfonyl HIV-1 protease inhibitors. , 2006, Bioorganic & Medicinal Chemistry.

[44]  Udo E W Lange,et al.  Orally active thrombin inhibitors. Part 1: optimization of the P1-moiety. , 2006, Bioorganic & medicinal chemistry letters.

[45]  Udo E W Lange,et al.  orally active thrombin inhibitors , 2006 .

[46]  M. Moses,et al.  Making the cut: protease-mediated regulation of angiogenesis. , 2006, Experimental cell research.

[47]  W. Bode,et al.  Structure and interaction modes of thrombin. , 2006, Blood cells, molecules & diseases.

[48]  Christopher M. Overall,et al.  Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy , 2006, Nature Reviews Cancer.

[49]  M. G. Albuquerque,et al.  HIV-1 reverse transcriptase: a therapeutical target in the spotlight. , 2006, Current medicinal chemistry.

[50]  P. Loke,et al.  Proteases in parasitic diseases. , 2006, Annual review of pathology.

[51]  J Andrew McCammon,et al.  Target flexibility in molecular recognition. , 2005, Biochimica et biophysica acta.

[52]  J. Maupin-Furlow,et al.  Archaeal proteasomes and other regulatory proteases. , 2005, Current opinion in microbiology.

[53]  G. Deng,et al.  Serine proteases and cardiac function. , 2005, Biochimica et biophysica acta.

[54]  E. Di Cera,et al.  Hirudin Binding Reveals Key Determinants of Thrombin Allostery* , 2005, Journal of Biological Chemistry.

[55]  H. Ohno,et al.  Novel matrix metalloproteinase inhibitors: generation of lead compounds by the in silico fragment-based approach. , 2005, Bioorganic & medicinal chemistry.

[56]  E. Freire,et al.  Adaptive inhibitors of the HIV-1 protease. , 2005, Progress in biophysics and molecular biology.

[57]  T. Henry,et al.  Extracellular Proteases in Atherosclerosis and Restenosis , 2005, Arteriosclerosis, thrombosis, and vascular biology.

[58]  K. Nogami,et al.  Exosite-interactive Regions in the A1 and A2 Domains of Factor VIII Facilitate Thrombin-catalyzed Cleavage of Heavy Chain* , 2005, Journal of Biological Chemistry.

[59]  Ivano Bertini,et al.  Conformational variability of matrix metalloproteinases: beyond a single 3D structure. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[60]  J. Otlewski,et al.  The many faces of protease–protein inhibitor interaction , 2005, The EMBO journal.

[61]  Hiroshi Sato,et al.  Roles of membrane‐type matrix metalloproteinase‐1 in tumor invasion and metastasis , 2005, Cancer science.

[62]  J. Chmielewski,et al.  Development of low molecular weight HIV-1 protease dimerization inhibitors. , 2005, Journal of medicinal chemistry.

[63]  David S Hartsough,et al.  Development of alpha-keto-based inhibitors of cruzain, a cysteine protease implicated in Chagas disease. , 2005, Bioorganic & medicinal chemistry.

[64]  N. Vergnolle Protease-activated receptors and inflammatory hyperalgesia. , 2005, Memorias do Instituto Oswaldo Cruz.

[65]  R. Ala-aho,et al.  Collagenases in cancer. , 2005, Biochimie.

[66]  J. Yelle,et al.  Lysine derivatives as potent HIV protease inhibitors. Discovery, synthesis and structure-activity relationship studies. , 2005, Bioorganic & medicinal chemistry letters.

[67]  P. Ascenzi,et al.  Probing the cruzain S2 recognition subsite: a kinetic and binding energy calculation study. , 2005, Biochemistry.

[68]  J. Gut,et al.  Discovery of potent thiosemicarbazone inhibitors of rhodesain and cruzain. , 2005, Bioorganic & medicinal chemistry letters.

[69]  S. Steinberg The Cardiovascular Actions of Protease-Activated Receptors , 2005, Molecular Pharmacology.

[70]  N. Bunnett,et al.  Protease-activated receptors: protease signaling in the gastrointestinal tract. , 2004, Current opinion in pharmacology.

[71]  T. Macdonald,et al.  Matrix metalloproteinases and the gut - new roles for old enzymes. , 2004, Current opinion in pharmacology.

[72]  J. Scharfstein,et al.  A New Cruzipain-Mediated Pathway of Human Cell Invasion by Trypanosoma cruzi Requires Trypomastigote Membranes , 2004, Infection and Immunity.

[73]  T. Brighton The direct thrombin inhibitor melagatran/ximelagatran , 2004, The Medical journal of Australia.

[74]  杨靓,et al.  Aspirin resistance , 2004 .

[75]  A. Sparreboom,et al.  Chemically modified tetracyclines as inhibitors of matrix metalloproteinases. , 2004, Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy.

[76]  Soumyendu Raha,et al.  Similarity of Binding Sites of Human Matrix Metalloproteinases*[boxs] , 2004, Journal of Biological Chemistry.

[77]  C. Clavel,et al.  Tumour invasion and matrix metalloproteinases. , 2004, Critical reviews in oncology/hematology.

[78]  N. Borkakoti Matrix metalloprotease inhibitors: design from structure. , 2004, Biochemical Society transactions.

[79]  J. Reiffel Will direct thrombin inhibitors replace warfarin for preventing embolic events in atrial fibrillation? , 2004, Current opinion in cardiology.

[80]  A. Velázquez‐Campoy,et al.  Structural and thermodynamic basis of resistance to HIV-1 protease inhibition: implications for inhibitor design. , 2003, Current drug targets. Infectious disorders.

[81]  E. Freire,et al.  Multidrug resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations. , 2003, Biochemistry.

[82]  J. Huntington,et al.  Targeting thrombin--rational drug design from natural mechanisms. , 2003, Trends in pharmacological sciences.

[83]  D. Hawkins Clinical trials with factor Xa inhibition in the prevention of postoperative venous thromboembolism. , 2003, American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists.

[84]  T. Yoshizaki,et al.  Cleavage of Syndecan-1 by Membrane Type Matrix Metalloproteinase-1 Stimulates Cell Migration* , 2003, Journal of Biological Chemistry.

[85]  David Gustafsson,et al.  The pharmacodynamics and pharmacokinetics of the oral direct thrombin inhibitor ximelagatran and its active metabolite melagatran: a mini-review. , 2003, Thrombosis research.

[86]  S. Weiss,et al.  Membrane Type I Matrix Metalloproteinase Usurps Tumor Growth Control Imposed by the Three-Dimensional Extracellular Matrix , 2003, Cell.

[87]  G. Hutchins,et al.  Synthesis of radiolabeled biphenylsulfonamide matrix metalloproteinase inhibitors as new potential PET cancer imaging agents. , 2003, Bioorganic & medicinal chemistry letters.

[88]  J. Huntington Mechanisms of glycosaminoglycan activation of the serpins in hemostasis , 2003, Journal of thrombosis and haemostasis : JTH.

[89]  V. Puri Death in the ICU: feelings of those left behind. , 2003, Chest.

[90]  G. Shen,et al.  Hirulog-like peptide reduces restenosis and expression of tissue factor and transforming growth factor-beta in carotid artery of atherosclerotic rabbits. , 2003, Atherosclerosis.

[91]  Werner Seitz,et al.  D-Phe-Pro-Arg type thrombin inhibitors: unexpected selectivity by modification of the P1 moiety. , 2003, Bioorganic & medicinal chemistry letters.

[92]  Maria Pavlaki,et al.  Matrix metalloproteinase inhibitors (MMPIs): The beginning of phase I or the termination of phase III clinical trials , 2003, Cancer and Metastasis Reviews.

[93]  C. Patterson,et al.  Thrombin and vascular development: a sticky subject. , 2003, Arteriosclerosis, thrombosis, and vascular biology.

[94]  C. Derian,et al.  Extracellular Mediators in Atherosclerosis and Thrombosis: Lessons From Thrombin Receptor Knockout Mice , 2003, Arteriosclerosis, thrombosis, and vascular biology.

[95]  F. Ofosu Protease activated receptors 1 and 4 govern the responses of human platelets to thrombin. , 2003, Transfusion and apheresis science : official journal of the World Apheresis Association : official journal of the European Society for Haemapheresis.

[96]  J. Walenga An Overview of the Direct Thrombin Inhibitor Argatroban , 2003, Pathophysiology of Haemostasis and Thrombosis.

[97]  Motoharu Seiki,et al.  Membrane-type 1 matrix metalloproteinase: a key enzyme for tumor invasion. , 2003, Cancer letters.

[98]  Maria Deloria-Knoll,et al.  Survival Benefit of Initiating Antiretroviral Therapy in HIV-Infected Persons in Different CD4+ Cell Strata , 2003, Annals of Internal Medicine.

[99]  K. Ishikawa,et al.  Rational design, synthesis, and structure-activity relationships of novel factor Xa inhibitors: (2-substituted-4-amidinophenyl)pyruvic and -propionic acids. , 2003, Journal of medicinal chemistry.

[100]  C. Esmon,et al.  The molecular basis of thrombin allostery revealed by a 1.8 A structure of the "slow" form. , 2003, Structure.

[101]  J. Eikelboom Homocysteine-lowering therapy improved outcomes after percutaneous coronary intervention. , 2003, ACP journal club.

[102]  D. Cunningham,et al.  Matrix metalloproteinase inhibitors--an emphasis on gastrointestinal malignancies. , 2003, Critical reviews in oncology/hematology.

[103]  P. Gros,et al.  Novel proteases: common themes and surprising features. , 2002, Current opinion in structural biology.

[104]  J. Cazzulo Proteinases of Trypanosoma cruzi: patential targets for the chemotherapy of Changas desease. , 2002, Current topics in medicinal chemistry.

[105]  R. Powers,et al.  Impact of mobility on structure-based drug design for the MMPs. , 2002, Journal of the American Chemical Society.

[106]  M. Krem,et al.  Ser214 Is Crucial for Substrate Binding to Serine Proteases* , 2002, The Journal of Biological Chemistry.

[107]  Y. Itoh,et al.  Matrix metalloproteinases in cancer. , 2002, Essays in biochemistry.

[108]  Motoharu Seiki,et al.  The cell surface: the stage for matrix metalloproteinase regulation of migration. , 2002, Current opinion in cell biology.

[109]  R. Curtiss,et al.  Cruzipain Induces Both Mucosal and Systemic Protection against Trypanosoma cruzi in Mice , 2002, Infection and Immunity.

[110]  W. Bode,et al.  Thermodynamic Linkage between the S1 Site, the Na+ Site, and the Ca2+ Site in the Protease Domain of Human Activated Protein C (APC) , 2002, The Journal of Biological Chemistry.

[111]  Elizabeth Connick,et al.  Antiretroviral-drug resistance among patients recently infected with HIV. , 2002, The New England journal of medicine.

[112]  W. Roush,et al.  Recent advances in the synthesis, design and selection of cysteine protease inhibitors. , 2002, Current opinion in chemical biology.

[113]  A. Wittkowsky The Role of Thrombin Inhibition During Percutaneous Coronary Intervention , 2002, Pharmacotherapy.

[114]  J. Nappi The Biology of Thrombin in Acute Coronary Syndromes , 2002, Pharmacotherapy.

[115]  J. McKerrow,et al.  Synthesis and Structure−Activity Relationship Study of Potent Trypanocidal Thio Semicarbazone Inhibitors of the Trypanosomal Cysteine Protease Cruzain , 2002 .

[116]  B. Fingleton,et al.  Matrix Metalloproteinase Inhibitors and Cancer—Trials and Tribulations , 2002, Science.

[117]  M. Sajid,et al.  Cysteine proteases of parasitic organisms. , 2002, Molecular and biochemical parasitology.

[118]  Z. Werb,et al.  New functions for the matrix metalloproteinases in cancer progression , 2002, Nature Reviews Cancer.

[119]  M Karplus,et al.  Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility. , 2002, Journal of molecular biology.

[120]  E. Ben-Chetrit,et al.  Major Bleeding Caused by Warfarin in a Genetically Susceptible Patient , 2002, Pharmacotherapy.

[121]  R. Glasspool,et al.  Matrix metalloproteinase inhibitors: past lessons and future prospects in breast cancer. , 2001, Breast.

[122]  V. Ellis,et al.  Cellular strategies for proteolytic targeting during migration and invasion , 2001, FEBS letters.

[123]  J. Suh,et al.  An aspartic protease analogue: intermolecular catalysis of peptide hydrolysis by carboxyl groups. , 2001, Bioorganic & medicinal chemistry letters.

[124]  N. Rawlings,et al.  Evolutionary Lines of Cysteine Peptidases , 2001, Biological chemistry.

[125]  S. Zucker,et al.  Matrix metalloproteinases in cancer invasion, metastasis and angiogenesis. , 2001, Drug discovery today.

[126]  B. Wiggins,et al.  Argatroban for Prevention and Treatment of Thromboembolism in Heparin-Induced Thrombocytopenia , 2001, The Annals of pharmacotherapy.

[127]  B. Walker,et al.  Strategies for the inhibition of serine proteases , 2001, Cellular and Molecular Life Sciences CMLS.

[128]  M. Hidalgo,et al.  Development of matrix metalloproteinase inhibitors in cancer therapy. , 2001, Journal of the National Cancer Institute.

[129]  C. Overall,et al.  Tissue Inhibitor of Metalloproteinase (TIMP)-2 Acts Synergistically with Synthetic Matrix Metalloproteinase (MMP) Inhibitors but Not with TIMP-4 to Enhance the (Membrane Type 1)-MMP-dependent Activation of Pro-MMP-2* , 2000, The Journal of Biological Chemistry.

[130]  K. Goa,et al.  Desirudin: a review of its use in the management of thrombotic disorders. , 2000, Drugs.

[131]  Y. Masuho,et al.  Membrane‐type 6 matrix metalloproteinase (MT6‐MMP, MMP‐25) is the second glycosyl‐phosphatidyl inositol (GPI)‐anchored MMP , 2000, FEBS letters.

[132]  C. Caffrey,et al.  Cysteine proteinases of trypanosome parasites: novel targets for chemotherapy. , 2000, Current drug targets.

[133]  E A Emini,et al.  Identification of MK-944a: a second clinical candidate from the hydroxylaminepentanamide isostere series of HIV protease inhibitors. , 2000, Journal of medicinal chemistry.

[134]  Shultz,et al.  Small-Molecule Inhibitors of HIV-1 Protease Dimerization Derived from Cross-Linked Interfacial Peptides This work was supported by NIH (GM52739) and NSF (9457372-CHE). , 2000, Angewandte Chemie.

[135]  M. Shultz,et al.  Small‐Molecule Inhibitors of HIV‐1 Protease Dimerization Derived from Cross‐Linked Interfacial Peptides , 2000 .

[136]  David A. Stock,et al.  BMS-232632, a Highly Potent Human Immunodeficiency Virus Protease Inhibitor That Can Be Used in Combination with Other Available Antiretroviral Agents , 2000, Antimicrobial Agents and Chemotherapy.

[137]  R J Fletterick,et al.  A target within the target: probing cruzain's P1' site to define structural determinants for the Chagas' disease protease. , 2000, Structure.

[138]  D. Peterson,et al.  A comparison of stavudine, didanosine and indinavir with zidovudine, lamivudine and indinavir for the initial treatment of HIV-1 infected individuals: Selection of thymidine analog regimen therapy (START II)* , 2000, AIDS.

[139]  S. Weiss,et al.  Regulation of membrane type-1 matrix metalloproteinase activation by proprotein convertases. , 2000, Molecular biology of the cell.

[140]  R. Swanstrom,et al.  Human immunodeficiency virus type-1 protease inhibitors: therapeutic successes and failures, suppression and resistance. , 2000, Pharmacology & therapeutics.

[141]  Sangyoub Lee,et al.  Ab Initio Studies on the Catalytic Mechanism of Aspartic Proteinases: Nucleophilic versus General Acid/General Base Mechanism , 2000 .

[142]  L. Matrisian,et al.  Matrix metalloproteinases: multifunctional contributors to tumor progression. , 2000, Molecular medicine today.

[143]  M Nakajima,et al.  [Matrix metalloproteinase inhibitors]. , 2000, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[144]  Robert Huber,et al.  Structural basis for the anticoagulant activity of the thrombin–thrombomodulin complex , 2000, Nature.

[145]  G. Palù,et al.  Aspartic protease inhibitors , 2000 .

[146]  Y. Itoh,et al.  Membrane Type 4 Matrix Metalloproteinase (MT4-MMP, MMP-17) Is a Glycosylphosphatidylinositol-anchored Proteinase* , 1999, The Journal of Biological Chemistry.

[147]  M. Krem,et al.  The C-terminal Sequence Encodes Function in Serine Proteases* , 1999, The Journal of Biological Chemistry.

[148]  A. Gearing,et al.  Design and therapeutic application of matrix metalloproteinase inhibitors. , 1999, Chemical reviews.

[149]  H. B. Schock,et al.  Non-active Site Changes Elicit Broad-based Cross-resistance of the HIV-1 Protease to Inhibitors* , 1999, The Journal of Biological Chemistry.

[150]  J. McKerrow,et al.  Development of cysteine protease inhibitors as chemotherapy for parasitic diseases: insights on safety, target validation, and mechanism of action. , 1999, International journal for parasitology.

[151]  P. Henriet,et al.  INHIBITION OF MATRIX METALLOPROTEINASES THERAPEUTIC APPLICATIONS , 1999 .

[152]  P. Henriet,et al.  INHIBITION OF MATRIX METALLOPROTEINASES THERAPEUTIC APPLICATIONS , 1999 .

[153]  T. Haas,et al.  Extracellular matrix-driven matrix metalloproteinase production in endothelial cells: implications for angiogenesis. , 1999, Trends in cardiovascular medicine.

[154]  J. Weitz,et al.  Exosites 1 and 2 Are Essential for Protection of Fibrin-bound Thrombin from Heparin-catalyzed Inhibition by Antithrombin and Heparin Cofactor II* , 1999, The Journal of Biological Chemistry.

[155]  P. Henriet,et al.  Tissue inhibitors of metalloproteinases (TEMP) in invasion and proliferation , 1999, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.

[156]  A. Rezaie,et al.  Identification and Characterization of the Sodium-binding Site of Activated Protein C* , 1999, The Journal of Biological Chemistry.

[157]  P. Selzer,et al.  Structure-based design, synthesis and evaluation of conformationally constrained cysteine protease inhibitors. , 1998, Bioorganic & medicinal chemistry.

[158]  H. Castro,et al.  Bothroalternin, a thrombin inhibitor from the venom of Bothrops alternatus. , 1998, Toxicon : official journal of the International Society on Toxinology.

[159]  Dale J. Kempf,et al.  ABT-378, a Highly Potent Inhibitor of the Human Immunodeficiency Virus Protease , 1998, Antimicrobial Agents and Chemotherapy.

[160]  R. Wolowacz,et al.  Tetracycline-Based MMP Inhibitors Can Prevent Fibroblast-Mediated Collagen Gel Contraction In Vitro , 1998, Advances in dental research.

[161]  H. Larjava,et al.  The Effects of Chemically Modified Tetracyclines (CMTs) on Human Keratinocyte Proliferation and Migration , 1998, Advances in dental research.

[162]  L. Golub,et al.  Tetracyclines Inhibit Protein Glycation in Experimental Diabetes , 1998, Advances in dental research.

[163]  S. Weiss,et al.  Matrix Metalloproteinases Regulate Neovascularization by Acting as Pericellular Fibrinolysins , 1998, Cell.

[164]  H. Sato,et al.  Membrane type 1-matrix metalloproteinase is involved in the formation of hepatocyte growth factor/scatter factor-induced branching tubules in madin-darby canine kidney epithelial cells. , 1998, Biochemical and biophysical research communications.

[165]  J. McKerrow,et al.  Design and synthesis of dipeptidyl α′,β′-epoxy ketones, potent irreversible inhibitors of the cysteine protease cruzain , 1998 .

[166]  J. McKerrow,et al.  Cysteine Protease Inhibitors Cure an Experimental Trypanosoma cruzi Infection , 1998, Journal of Experimental Medicine.

[167]  K D Watenpaugh,et al.  Tipranavir (PNU-140690): a potent, orally bioavailable nonpeptidic HIV protease inhibitor of the 5,6-dihydro-4-hydroxy-2-pyrone sulfonamide class. , 1998, Journal of medicinal chemistry.

[168]  J. Palmer,et al.  Cysteine protease inhibitors alter Golgi complex ultrastructure and function in Trypanosoma cruzi. , 1998, Journal of cell science.

[169]  A. Karameris,et al.  Association of expression of metalloproteinases and their inhibitors with the metastatic potential of squamous-cell lung carcinomas. A molecular and immunohistochemical study. , 1997, American journal of respiratory and critical care medicine.

[170]  N. Chirgadze,et al.  Viracept (nelfinavir mesylate, AG1343): a potent, orally bioavailable inhibitor of HIV-1 protease. , 1997, Journal of medicinal chemistry.

[171]  L. Matrisian,et al.  Changing views of the role of matrix metalloproteinases in metastasis. , 1997, Journal of the National Cancer Institute.

[172]  R J Fletterick,et al.  Structural determinants of specificity in the cysteine protease cruzain , 1997, Protein science : a publication of the Protein Society.

[173]  J. Herbert,et al.  Synthesis and pharmacological properties of a close analogue of an antithrombotic pentasaccharide (SR 90107A/ORG 31540). , 1997, Journal of medicinal chemistry.

[174]  Y. Okada,et al.  Expression and tissue localization of membrane-types 1, 2, and 3 matrix metalloproteinases in human invasive breast carcinomas. , 1997, Cancer research.

[175]  D. Back,et al.  Protease Inhibitors in Patients with HIV Disease , 1997, Clinical pharmacokinetics.

[176]  P. Lam,et al.  Molecular basis of HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with cyclic urea inhibitors. , 1997, Biochemistry.

[177]  T. Schirmeister,et al.  Cysteine Proteases and Their Inhibitors. , 1997, Chemical reviews.

[178]  A. Tulinsky,et al.  The molecular environment of the Na+ binding site of thrombin. , 1997, Biophysical chemistry.

[179]  P. Jadhav,et al.  Cyclic urea amides: HIV-1 protease inhibitors with low nanomolar potency against both wild type and protease inhibitor resistant mutants of HIV. , 1997, Journal of medicinal chemistry.

[180]  H. Sato,et al.  Activation of a recombinant membrane type 1‐matrix metalloproteinase (MT1‐MMP) by furin and its interaction with tissue inhibitor of metalloproteinases (TIMP)‐2 , 1996, FEBS letters.

[181]  S Foundling,et al.  Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases. , 1996, Biochemistry.

[182]  G. Butler,et al.  The Soluble Catalytic Domain of Membrane Type 1 Matrix Metalloproteinase Cleaves the Propeptide of Progelatinase A and Initiates Autoproteolytic Activation , 1996, The Journal of Biological Chemistry.

[183]  E. Purisima,et al.  Contribution to activity of histidine-aromatic, amide-aromatic, and aromatic-aromatic interactions in the extended catalytic site of cysteine proteinases. , 1996, Biochemistry.

[184]  M. Jalkanen,et al.  The role of syndecan-1 in malignancies. , 1996, Annals of medicine.

[185]  D. Cooper,et al.  HIV protease inhibitors , 1996, AIDS.

[186]  J. Leis,et al.  Development of Drug Resistance to HIV-1 Protease Inhibitors (*) , 1995, The Journal of Biological Chemistry.

[187]  E. Di Cera,et al.  The Na+ Binding Site of Thrombin (*) , 1995, The Journal of Biological Chemistry.

[188]  W. Stetler-Stevenson,et al.  Elevated tissue inhibitor of metalloproteinase 1 RNA in colorectal cancer stroma correlates with lymph node and distant metastases. , 1995, Clinical cancer research : an official journal of the American Association for Cancer Research.

[189]  Y. Okada,et al.  Expression of membrane-type matrix metalloproteinase in human gastric carcinomas. , 1995, Cancer research.

[190]  C. Esmon Thrombomodulin as a model of molecular mechanisms that modulate protease specificity and function at the vessel surface , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[191]  E. Di Cera,et al.  An allosteric switch controls the procoagulant and anticoagulant activities of thrombin. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[192]  J. Condra,et al.  In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors , 1995, Nature.

[193]  H. Sato,et al.  Cloning of a human gene potentially encoding a novel matrix metalloproteinase having a C-terminal transmembrane domain. , 1995, Gene.

[194]  R J Fletterick,et al.  The crystal structure of cruzain: a therapeutic target for Chagas' disease. , 1995, Journal of molecular biology.

[195]  C. Craik,et al.  Structural basis of substrate specificity in the serine proteases , 1995, Protein science : a publication of the Protein Society.

[196]  P. Berti,et al.  Alignment/phylogeny of the papain superfamily of cysteine proteases. , 1995, Journal of molecular biology.

[197]  D. Fairlie,et al.  Targeting HIV-1 protease: a test of drug-design methodologies. , 1995, Trends in pharmacological sciences.

[198]  R. Becker,et al.  Antithrombotic therapy. An abbreviated reference for clinicians. , 1995, Archives of internal medicine.

[199]  Philip R. Johnson,et al.  Antibodies to the putative SIV infection‐enhancing domain diminish beneficial effects of an SIV gp160 vaccine in rhesus macaques , 1995, AIDS.

[200]  R. Hanzlik,et al.  Peptidyl thioamides as substrates and inhibitors of papain, and as probes of the kinetic significance of the oxyanion hole. , 1994, Biochimica et biophysica acta.

[201]  J. Maraganore,et al.  Kinetic mechanism for the interaction of Hirulog with thrombin. , 1994, Biochemistry.

[202]  J. Reynolds,et al.  Cell surface-mediated activation of progelatinase A: demonstration of the involvement of the C-terminal domain of progelatinase A in cell surface binding and activation of progelatinase A by primary fibroblasts. , 1994, The Biochemical journal.

[203]  P. Darke,et al.  L-735,524: the design of a potent and orally bioavailable HIV protease inhibitor. , 1994, Journal of medicinal chemistry.

[204]  D. Tessier,et al.  Identification of new cysteine protease gene isoforms in Trypanosoma cruzi. , 1994, Molecular and biochemical parasitology.

[205]  Christine Girardot,et al.  Effects of the Synthetic Thrombin Inhibitor Argatroban on Fibrin- or Clot-Incorporated Thrombin: Comparison with Heparin and Recombinant Hirudin , 1994, Thrombosis and Haemostasis.

[206]  Motoharu Seiki,et al.  A matrix metalloproteinase expressed on the surface of invasive tumour cells , 1994, Nature.

[207]  J. Sheehan,et al.  Molecular mapping of the heparin-binding exosite of thrombin. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[208]  L. Everitt,et al.  Selection of multiple human immunodeficiency virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[209]  Q. Ye,et al.  Contribution of the C-terminal domain of metalloproteinases to binding by tissue inhibitor of metalloproteinases. C-terminal truncated stromelysin and matrilysin exhibit equally compromised binding affinities as compared to full-length stromelysin. , 1994, The Journal of biological chemistry.

[210]  M. Cockett,et al.  Assessment of the role of the fibronectin-like domain of gelatinase A by analysis of a deletion mutant. , 1994, The Journal of biological chemistry.

[211]  J. Badimón,et al.  Thrombin in arterial thrombosis. , 1994, Haemostasis.

[212]  D Norbeck,et al.  Characterization of human immunodeficiency virus type 1 variants with increased resistance to a C2-symmetric protease inhibitor , 1994, Journal of virology.

[213]  M. Lippman,et al.  Association of MMP-2 activation potential with metastatic progression in human breast cancer cell lines independent of MMP-2 production. , 1993, Journal of the National Cancer Institute.

[214]  W. Bode,et al.  A Model for the Specificity of Fibrinogen Cleavage by Thrombin , 1993, Seminars in thrombosis and hemostasis.

[215]  W. Bode,et al.  Spatial Structure of Thrombin as a Guide to Its Multiple Sites of Interaction , 1993, Seminars in thrombosis and hemostasis.

[216]  J. Carmichael,et al.  Association between expression of activated 72-kilodalton gelatinase and tumor spread in non-small-cell lung carcinoma. , 1993, Journal of the National Cancer Institute.

[217]  C. Enenkel,et al.  BLH1 codes for a yeast thiol aminopeptidase, the equivalent of mammalian bleomycin hydrolase. , 1993, The Journal of biological chemistry.

[218]  Z. Werb,et al.  Role of zinc-binding- and hemopexin domain-encoded sequences in the substrate specificity of collagenase and stromelysin-2 as revealed by chimeric proteins. , 1993, The Journal of biological chemistry.

[219]  A. Mills,et al.  Peptide-fluoromethyl ketones arrest intracellular replication and intercellular transmission of Trypanosoma cruzi. , 1993, Molecular and biochemical parasitology.

[220]  E. Di Cera,et al.  Thrombin is a Na(+)-activated enzyme. , 1992, Biochemistry.

[221]  R. S. Brown,et al.  Attack of zwitterionic ammonium thiolates on a distorted anilide as a model for the acylation of papain by amides. A simple demonstration of a bell-shaped pH/rate profile , 1992 .

[222]  Junghun Suh,et al.  Comparable rates for cleavage of amide and ester bonds through nucleophilic attack by carboxylate anion and general acid catalysis by metal-bound water in a carboxypeptidase A model , 1992 .

[223]  J. Maraganore,et al.  Thrombin-specific inhibition by and slow cleavage of hirulog-1. , 1992, The Biochemical journal.

[224]  D. Lambert,et al.  Human immunodeficiency virus type 1 protease inhibitors irreversibly block infectivity of purified virions from chronically infected cells , 1992, Antimicrobial Agents and Chemotherapy.

[225]  C. Craik,et al.  The sequence, organization, and expression of the major cysteine protease (cruzain) from Trypanosoma cruzi. , 1992, The Journal of biological chemistry.

[226]  A. Frasch,et al.  The major cysteine proteinase (cruzipain) from Trypanosoma cruzi is encoded by multiple polymorphic tandemly organized genes located on different chromosomes. , 1992, Molecular and biochemical parasitology.

[227]  Robert Huber,et al.  The refined 2.15 A X‐ray crystal structure of human liver cathepsin B: the structural basis for its specificity. , 1991, The EMBO journal.

[228]  T. Meek,et al.  Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism. , 1991, Biochemistry.

[229]  R. Williamson,et al.  The N-terminal domain of tissue inhibitor of metalloproteinases retains metalloproteinase inhibitory activity. , 1991, Biochemistry.

[230]  V. Fuster,et al.  Thrombin regulation of platelet interaction with damaged vessel wall and isolated collagen type I at arterial flow conditions in a porcine model: effects of hirudins, heparin, and calcium chelation. , 1991, Blood.

[231]  F. Markwardt Past, present and future of hirudin. , 1991, Haemostasis.

[232]  A Wlodawer,et al.  Structural and evolutionary relationships between retroviral and eucaryotic aspartic proteinases. , 1991, Biochemistry.

[233]  I. Weber,et al.  Comparative analysis of the sequences and structures of HIV‐1 and HIV‐2 proteases , 1991, Proteins.

[234]  T L Blundell,et al.  The 3-D structure of HIV-1 proteinase and the design of antiviral agents for the treatment of AIDS. , 1990, Trends in biochemical sciences.

[235]  J. Scharfstein,et al.  Structural and functional identification of GP57/51 antigen of Trypanosoma cruzi as a cysteine proteinase. , 1990, Molecular and biochemical parasitology.

[236]  B. Moss,et al.  An inhibitor of the protease blocks maturation of human and simian immunodeficiency viruses and spread of infection. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[237]  J. Maraganore,et al.  Design and characterization of hirulogs: a novel class of bivalent peptide inhibitors of thrombin. , 1990, Biochemistry.

[238]  H. Morris,et al.  Disulphide bond assignment in human tissue inhibitor of metalloproteinases (TIMP). , 1990, The Biochemical journal.

[239]  I B Duncan,et al.  Rational design of peptide-based HIV proteinase inhibitors. , 1990, Science.

[240]  L. Liotta,et al.  Metalloproteinases and cancer invasion. , 1990, Seminars in cancer biology.

[241]  J. Gierse,et al.  Substrate specificity of recombinant human renal renin: effect of histidine in the P2 subsite on pH dependence. , 1990, Biochemistry.

[242]  O. Campetella,et al.  A major cysteine proteinase is developmentally regulated in Trypanosoma cruzi. , 1990, FEMS microbiology letters.

[243]  A Wlodawer,et al.  Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution. , 1989, Science.

[244]  M. Jaskólski,et al.  Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 protease. , 1989, Science.

[245]  J. Sodroski,et al.  Role of capsid precursor processing and myristoylation in morphogenesis and infectivity of human immunodeficiency virus type 1. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[246]  B. Dunn,et al.  Effective blocking of HIV‐1 proteinase activity by characteristic inhibitors of aspartic proteinases , 1989, FEBS letters.

[247]  W J Penny,et al.  Effects of thrombin inhibition on the development of acute platelet-thrombus deposition during angioplasty in pigs. Heparin versus recombinant hirudin, a specific thrombin inhibitor. , 1989, Circulation.

[248]  U. Hellman,et al.  Further characterization and partial amino acid sequence of a cysteine proteinase from Trypanosoma cruzi. , 1989, Molecular and biochemical parasitology.

[249]  W. C. Still,et al.  Hydrolysis of a peptide bond in neutral water , 1988 .

[250]  V. Turk,et al.  Human immunodeficiency virus has an aspartic-type protease that can be inhibited by pepstatin A. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[251]  L J Davis,et al.  Active human immunodeficiency virus protease is required for viral infectivity. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[252]  J. Kay Cysteine proteinases and their inhibitors : Edited by V. Turk Walter de Gruyter; Berlin, 1986 846 pages DM 390.00 , 1988 .

[253]  E. Padlan,et al.  Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[254]  T. Nakamura,et al.  A membrane-bound, calcium-dependent protease in yeast alpha-cell cleaving on the carboxyl side of paired basic residues. , 1987, Biochemical and biophysical research communications.

[255]  J. Scharfstein,et al.  Trypanosoma cruzi: characterization and isolation of a 57/51,000 m.w. surface glycoprotein (GP57/51) expressed by epimastigotes and bloodstream trypomastigotes. , 1986, Journal of immunology.

[256]  M. Shibuya,et al.  Murine leukemia virus maturation: protease region required for conversion from "immature" to "mature" core form and for virus infectivity. , 1985, Virology.

[257]  M. James,et al.  Stereochemical analysis of peptide bond hydrolysis catalyzed by the aspartic proteinase penicillopepsin. , 1985, Biochemistry.

[258]  S. Goff,et al.  A deletion mutation in the 5' part of the pol gene of Moloney murine leukemia virus blocks proteolytic processing of the gag and pol polyproteins , 1985, Journal of virology.

[259]  B. Keil,et al.  Evidence for an active‐center cysteine in the SH‐proteinase α‐clostripain through use of N‐tosyl‐L‐lysine chloromethyl ketone , 1984, FEBS letters.

[260]  R. Hodges,et al.  Effect of pH on the activities of penicillopepsin and Rhizopus pepsin and a proposal for the productive substrate binding mode in penicillopepsin. , 1984, Biochemistry.

[261]  R. Bar-Shavit,et al.  Monocyte chemotaxis: stimulation by specific exosite region in thrombin. , 1983, Science.

[262]  L. Polgár,et al.  Transition-state stabilization at the oxyanion binding sites of serine and thiol proteinases: hydrolyses of thiono and oxygen esters. , 1983, Biochemistry.

[263]  R. Bar-Shavit,et al.  Chemotactic response of monocytes to thrombin , 1983, The Journal of cell biology.

[264]  D. Davies,et al.  Three-dimensional structure of the complex of the Rhizopus chinensis carboxyl proteinase and pepstatin at 2.5-A resolution. , 1982, Biochemistry.

[265]  L. Polgár,et al.  Current problems in mechanistic studies of serine and cysteine proteinases. , 1982, The Biochemical journal.

[266]  M. James,et al.  Conformational flexibility in the active sites of aspartyl proteinases revealed by a pepstatin fragment binding to penicillopepsin. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[267]  K. Kaplan,et al.  The binding of thrombin by fibrin. , 1979, The Journal of biological chemistry.

[268]  K. Brocklehurst The equilibrium assumption is valid for the kinetic treatment of most time-dependent protein-modification reactions. , 1979, The Biochemical journal.

[269]  T. L. Blundell,et al.  Structural evidence for gene duplication in the evolution of the acid proteases , 1978, Nature.

[270]  E. P. Camargo,et al.  Proteolytic activites in cell extracts of Trypanosoma cruzi. , 1977, The Journal of protozoology.

[271]  L. Polgár On the mode of activation of the catalytically essential sulfhydryl group of papain. , 1973, European journal of biochemistry.

[272]  M. Hunkapiller,et al.  Studies on the catalytic mechanism of pepsin using a new synthetic substrate. , 1972, Biochemistry.

[273]  A. Cornish-Bowden,et al.  The pH-dependence of pepsin-catalysed reactions. , 1969, The Biochemical journal.

[274]  C. Lapière,et al.  Tadpole collagenase. Preparation and purification. , 1966, Biochemistry.

[275]  G. Lowe,et al.  DIRECT EVIDENCE FOR AN ACYLATED THIOL AS AN INTERMEDIATE IN PAPAIN- AND FICIN-CATALYSED HYDROLYSES. , 1965, The Biochemical journal.

[276]  C. Lapière,et al.  Collagenolytic activity in amphibian tissues: a tissue culture assay. , 1962, Proceedings of the National Academy of Sciences of the United States of America.

[277]  A. Strongin Proteolytic and non-proteolytic roles of membrane type-1 matrix metalloproteinase in malignancy. , 2010, Biochimica et biophysica acta.

[278]  L. Vrang,et al.  Design and synthesis of novel P2 substituents in diol-based HIV protease inhibitors. , 2010, European journal of medicinal chemistry.

[279]  A. Wensing,et al.  Fifteen years of HIV Protease Inhibitors: raising the barrier to resistance. , 2010, Antiviral research.

[280]  R. Kizek,et al.  Matrix metalloproteinases. , 2010, Current medicinal chemistry.

[281]  M. G. Albuquerque,et al.  Synthesis, antichagasic in vitro evaluation, cytotoxicity assays, molecular modeling and SAR/QSAR studies of a 2-phenyl-3-(1-phenyl-1H-pyrazol-4-yl)-acrylic acid benzylidene-carbohydrazide series. , 2009, Bioorganic & medicinal chemistry.

[282]  Bruno Martoglio,et al.  Aspartic proteases in drug discovery. , 2007, Current pharmaceutical design.

[283]  K. Bairy,et al.  Aspirin resistance. , 2007, Indian journal of physiology and pharmacology.

[284]  E. Bates,et al.  Direct thrombin inhibitors in cardiac disease , 2007, Cardiovascular Toxicology.

[285]  Á. Cequier,et al.  Inhibidores directos de la trombina en el intervencionismo coronario percutáneo. Bivalirudina , 2006 .

[286]  Christopher M Overall,et al.  Tumour microenvironment - opinion: validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy. , 2006, Nature reviews. Cancer.

[287]  C. White,et al.  Thrombin-directed inhibitors: pharmacology and clinical use. , 2005, American heart journal.

[288]  Salim Yusuf,et al.  Prognostic impact of body weight and abdominal obesity in women and men with cardiovascular disease. , 2005, American heart journal.

[289]  G. Lip,et al.  Effects of age, gender, ethnicity, diurnal variation and exercise on circulating levels of matrix metalloproteinases (MMP)-2 and -9, and their inhibitors, tissue inhibitors of matrix metalloproteinases (TIMP)-1 and -2. , 2005, Thrombosis research.

[290]  Deepak L. Bhatt,et al.  Thrombin, an ideal target for pharmacological inhibition: a review of direct thrombin inhibitors. , 2005, American heart journal.

[291]  M. Castresana,et al.  Reactive oxygen species-sensitive p38 MAPK controls thrombin-induced migration of vascular smooth muscle cells. , 2004, Journal of molecular and cellular cardiology.

[292]  UNAIDS: HIV rates up globally, Asia particularly worrisome. , 2004, Medicine & health.

[293]  B. Eriksson,et al.  Prevention of Venous Thromboembolism Following Orthopaedic Surgery , 2012, Drugs.

[294]  E. Di Cera,et al.  Thrombin: A paradigm for enzymes allosterically activated by monovalent cations , 2004, Comptes rendus biologies.

[295]  C. López-Otín,et al.  Membrane type-matrix metalloproteinases (MT-MMP). , 2003, Current topics in developmental biology.

[296]  E. Freire,et al.  A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance. , 2003, Biochemistry.

[297]  G. D. Hunter,et al.  Essential role for proteinase-activated receptor-2 in arthritis. , 2003, The Journal of clinical investigation.

[298]  E. Di Cera Thrombin interactions. , 2003, Chest.

[299]  Z. Werb,et al.  How matrix metalloproteinases regulate cell behavior. , 2001, Annual review of cell and developmental biology.

[300]  E. Ohman,et al.  Heparin and low-molecular-weight heparin: mechanisms of action, pharmacokinetics, dosing, monitoring, efficacy, and safety. , 2001, Chest.

[301]  G. Palù,et al.  Aspartic protease inhibitors. An integrated approach for the design andsynthesis of diaminodiol-based peptidomimetics. , 2000, European journal of biochemistry.

[302]  R. Linhardt,et al.  Production and chemical processing of low molecular weight heparins. , 1999, Seminars in thrombosis and hemostasis.

[303]  A Wlodawer,et al.  Inhibitors of HIV-1 protease: a major success of structure-assisted drug design. , 1998, Annual review of biophysics and biomolecular structure.

[304]  D. Turk,et al.  Revised Definition of Substrate Binding Sites of Papain-Like Cysteine Proteases , 1998, Biological chemistry.

[305]  J. McKerrow,et al.  Design and synthesis of dipeptidyl alpha',beta'-epoxy ketones, potent irreversible inhibitors of the cysteine protease cruzain. , 1998, Bioorganic & medicinal chemistry letters.

[306]  D. Powe,et al.  TIMP-3 mRNA expression is regionally increased in moderately and poorly differentiated colorectal adenocarcinoma. , 1997, British Journal of Cancer.

[307]  V. Turk,et al.  Cruzipain, the major cysteine proteinase from the protozoan parasite Trypanosoma cruzi. , 1997, Biological chemistry.

[308]  J. Erickson,et al.  Structural mechanisms of HIV drug resistance. , 1996, Annual review of pharmacology and toxicology.

[309]  W. de Souza,et al.  High resolution localization of cruzipain and Ssp4 in Trypanosoma cruzi by replica staining label fracture. , 1996, Biology of the cell.

[310]  S. Redshaw,et al.  Inhibitors of HIV proteinase. , 1995, Progress in medicinal chemistry.

[311]  M. Murcko,et al.  Crystal Structure of HIV-1 Protease in Complex with Vx-478, a Potent and Orally Bioavailable Inhibitor of the Enzyme , 1995 .

[312]  N. Roberts Drug-resistance patterns of saquinavir and other HIV proteinase inhibitors. , 1995, AIDS.

[313]  P. Darke,et al.  HIV protease as an inhibitor target for the treatment of AIDS. , 1994, Advances in pharmacology.

[314]  R. Ménard,et al.  Catalytic mechanism in papain family of cysteine peptidases. , 1994, Methods in enzymology.

[315]  J. Weitz New anticoagulant strategies. Current status and future potential. , 1994, Drugs.

[316]  W. Bode,et al.  A player of many parts: the spotlight falls on thrombin's structure. , 1993, Thrombosis research.

[317]  P. Rosenthal,et al.  The proteases and pathogenicity of parasitic protozoa. , 1993, Annual review of microbiology.

[318]  A. Wlodawer,et al.  Structure-based inhibitors of HIV-1 protease. , 1993, Annual review of biochemistry.

[319]  H. Birkedal‐Hansen,et al.  Matrix metalloproteinases: a review. , 1993, Critical reviews in oral biology and medicine : an official publication of the American Association of Oral Biologists.

[320]  J. Spring,et al.  Biology of the syndecans: a family of transmembrane heparan sulfate proteoglycans. , 1992, Annual review of cell biology.

[321]  J. Springer,et al.  Structure and function of retroviral proteases. , 1991, Annual review of biophysics and biophysical chemistry.

[322]  D. Davies,et al.  The structure and function of the aspartic proteinases. , 1990 .

[323]  D. Davies,et al.  Structure and Function of the Aspartic Proteinases , 1990, Advances in Experimental Medicine and Biology.

[324]  L. Polgár,et al.  Mechanism of action of cysteine proteinases: oxyanion binding site is not essential in the hydrolysis of specific substrates. , 1985, Biochemistry.

[325]  Alan J. Barrett,et al.  [41] Cathepsin B, cathepsin H, and cathepsin L , 1981 .