Electronic circular dichroism spectrum of uridine studied by the SAC–CI method

Abstract Symmetry-adapted cluster–configuration interaction (SAC–CI) method was applied to calculate electronic CD spectrum of a nucleoside, uridine. Based on the theoretical CD and absorption spectra, the observed peaks in the experimental spectra were assigned. The excited states of uracil, the base part of uridine, were also calculated for comparison. The origin of CD rotational strength for the low-lying π–π∗ and n –π∗ excited states was analyzed. Rotational strength of the π–π∗ transition depends on the magnitude of the electric and magnetic transition dipole moments, while that of the n –π∗ originates from the angle between the two transition moments.

[1]  C. Crespo-Hernández,et al.  Ultrafast excited-state dynamics in nucleic acids. , 2004, Chemical reviews.

[2]  J. Barton,et al.  DNA-mediated electron transfer from a modified base to ethidium: pi-stacking as modulator of reactivity. , 1998, Chemistry & biology.

[3]  H. Schaefer Methods of Electronic Structure Theory , 1977 .

[4]  Jerzy Leszczynski,et al.  COMPUTATIONAL CHEMISTRY: Reviews of Current Trends , 2006 .

[5]  Hiroshi Nakatsuji,et al.  Cluster expansion of the wavefunction. Calculation of electron correlations in ground and excited states by SAC and SAC CI theories , 1979 .

[6]  Hiroshi Nakatsuji,et al.  Cluster expansion of the wavefunction. Electron correlations in ground and excited states by SAC (symmetry-adapted-cluster) and SAC CI theories , 1979 .

[7]  G. Schaftenaar,et al.  Molden: a pre- and post-processing program for molecular and electronic structures* , 2000, J. Comput. Aided Mol. Des..

[8]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[9]  N. Nakatsuji,et al.  Cluster expansion of the wavefunction. Excited states , 1978 .

[10]  R. Hochstrasser Excited states of biological molecules: edited by J. B. Birks, published by John Wiley and Sons, London, New York, Toronto, Sydney, 1976. £18.50 ($40.70) (xvii+652 pages) , 1976 .

[11]  N. Berova,et al.  Circular Dichroism: Principles and Applications , 1994 .

[12]  C. Cantor,et al.  Techniques for the study of biological structure and function , 1980 .

[13]  R. K. Robins,et al.  Optical rotatory dispersion, circular dichroism, and absorption studies on some naturally occurring ribonucleosides and related derivatives. , 1967, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Hiroshi Nakatsuji,et al.  Cluster expansion of the wavefunction, valence and rydberg excitations, ionizations, and inner-valence ionizations of CO2 and N2O studied by the sac and sac CI theories , 1983 .

[15]  Aziz Sancar,et al.  Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. , 2003, Chemical reviews.

[16]  G. Fasman Circular Dichroism and the Conformational Analysis of Biomolecules , 1996, Springer US.

[17]  Ignacio Tinoco,et al.  Vapor Spectra and Heats of Vaporization of Some Purine and Pyrimidine Bases1 , 1965 .

[18]  T. H. Dunning Gaussian Basis Functions for Use in Molecular Calculations. III. Contraction of (10s6p) Atomic Basis Sets for the First‐Row Atoms , 1970 .