Mass spectrometry for enzyme assays and inhibitor screening: an emerging application in pharmaceutical research.

Robust methods that monitor enzyme activity and inhibitor potency are crucial to drug discovery and development. Over the past 20 years, mass spectrometric methods have increasingly been used to measure enzyme activity and kinetics. However, for rapid screening of inhibitory compounds, various forms of fluorescence and chemiluminscence readout have continued to dominate the market. As the sensitivity, speed, and miniaturization of mass spectrometry methods continue to advance, opportunities to couple mass spectrometry with screening will continue to come to the forefront. To appreciate the tremendous potential for MS-based screening assays, it becomes necessary to understand the current state of capabilities in this arena. Thus, this review is intended to capture how mass spectrometry for studying enzymes activity has progressed from simple qualitative questions (i.e., is the product detected?) to quantitative measures of enzyme activity and kinetics and then as a tool for rapidly screening inhibitory compounds as an alternative to current methods of high throughput drug screening.

[1]  E. Heinzle,et al.  Application of automated matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the measurement of enzyme activities. , 2001, Rapid communications in mass spectrometry : RCM.

[2]  J. Langridge,et al.  Quantitation by fast-atom bombardment mass spectrometry: assay of cytidine 3',5'-cyclic monophosphate-responsive protein kinase. , 1992, Rapid communications in mass spectrometry : RCM.

[3]  M. Engelhard,et al.  Porous silicon as a versatile platform for laser desorption/ionization mass spectrometry. , 2001, Analytical chemistry.

[4]  D. Armstrong,et al.  Ionic matrices for matrix-assisted laser desorption/ionization time-of-flight detection of DNA oligomers. , 2003, Rapid communications in mass spectrometry : RCM.

[5]  C. Bertozzi,et al.  Kinetic analysis of NodST sulfotransferase using an electrospray ionization mass spectrometry assay. , 2002, Biochemistry.

[6]  D. Cornett,et al.  Liquid mixtures for matrix-assisted laser desorption , 1993 .

[7]  D. Volmer,et al.  Some fundamental and technical aspects of the quantitative analysis of pharmaceutical drugs by matrix-assisted laser desorption/ionization mass spectrometry. , 2005, Rapid communications in mass spectrometry : RCM.

[8]  R. Newton,et al.  Kinetic analysis of cyclic CMP-specific and multifunctional phosphodiesterases by quantitative positive-ion fast-atom bombardment mass spectrometry. , 1999, Rapid communications in mass spectrometry : RCM.

[9]  M. Mank,et al.  2,5-Dihydroxybenzoic acid butylamine and other ionic liquid matrixes for enhanced MALDI-MS analysis of biomolecules. , 2004, Analytical chemistry.

[10]  O John Semmes,et al.  Serum, salivary and tissue proteomics for discovery of biomarkers for head and neck cancers , 2005, Expert review of molecular diagnostics.

[11]  C. Petzold,et al.  Investigation of ion/molecule reactions as a quantification method for phosphorylated positional isomers: An FT-ICR approach , 2003, Journal of the American Society for Mass Spectrometry.

[12]  H. Kuwata,et al.  Direct detection and quantitative determination of bovine lactoferricin and lactoferrin fragments in human gastric contents by affinity mass spectrometry. , 1998, Advances in experimental medicine and biology.

[13]  D. Volmer,et al.  Quantitative analysis of small pharmaceutical drugs using a high repetition rate laser matrix-assisted laser/desorption ionization source. , 2003, Rapid communications in mass spectrometry : RCM.

[14]  G. Siuzdak,et al.  Quantitative electrospray mass spectrometry for the rapid assay of enzyme inhibitors. , 1997, Chemistry & biology.

[15]  Koichi Tanaka,et al.  Protein and polymer analyses up to m/z 100 000 by laser ionization time-of-flight mass spectrometry , 1988 .

[16]  G. Siuzdak,et al.  Chemoenzymatic Preparation of Novel Cyclic Imine Sugars and Rapid Biological Activity Evaluation Using Electrospray Mass Spectrometry and Kinetic Analysis , 1997 .

[17]  J. Leary,et al.  Determination of enzyme/substrate specificity constants using a multiple substrate ESI-MS assay , 2004, Journal of the American Society for Mass Spectrometry.

[18]  Kermit K. Murray,et al.  Reproducibility and quantitation of matrix-assisted laser desorption ionization mass spectrometry: effects of nitrocellulose on peptide ion yields. , 1993, Biological mass spectrometry.

[19]  U. Karst,et al.  Screening for proteolytic activities in snake venom by means of a multiplexing electrospray ionization mass spectrometry assay scheme. , 2005, Rapid communications in mass spectrometry : RCM.

[20]  M. Gelb,et al.  Tandem mass spectrometric analysis of dried blood spots for screening of mucopolysaccharidosis I in newborns. , 2005, Clinical Chemistry.

[21]  J. Leary,et al.  Kinetic measurements of phosphoglucomutase by direct analysis of glucose-1-phosphate and glucose-6-phosphate using ion/molecule reactions and Fourier transform ion cyclotron resonance mass spectrometry. , 2004, Analytical biochemistry.

[22]  M. Vestal,et al.  Direct monitoring of sequential enzymatic hydrolysis of peptides by thermospray mass spectrometry. , 1984, Biomedical mass spectrometry.

[23]  J. Brennan,et al.  Inhibitor screening using immobilized enzyme reactor chromatography/mass spectrometry. , 2005, Analytical chemistry.

[24]  Eugene A. Kapp,et al.  Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database , 2005, Proteomics.

[25]  H. Lingeman,et al.  Systematic development of an enzymatic phosphorylation assay compatible with mass spectrometric detection , 2005, Analytical and bioanalytical chemistry.

[26]  M. Vestal,et al.  ON-LINE PEPTIDE SEQUENCING BY ENZYMIC HYDROLYSIS, HIGH PERFORMANCE LIQUID CHROMATOGRAPHY, AND THERMOSPRAY MASS SPECTROMETRY , 1985 .

[27]  T. Yip,et al.  Cryptic Antigenic Determinants on the Extracellular Pyruvate Dehydrogenase Complex/Mimeotope Found in Primary Biliary Cirrhosis , 1996, The Journal of Biological Chemistry.

[28]  T. Covey,et al.  Characterization and performance of MALDI on a triple quadrupole mass spectrometer for analysis and quantification of small molecules. , 2005, Analytical chemistry.

[29]  G. Siuzdak,et al.  Quantitative analysis with desorption/ionization on silicon mass spectrometry using electrospray deposition. , 2003, Analytical chemistry.

[30]  Hasmik Keshishian,et al.  Automated High Throughput Multiple Target Screening of Molecular Libraries by Microfluidic MALDI-TOF MS , 1998 .

[31]  D. Muddiman,et al.  Quantitative measurement of cyclosporin A in blood by time-of-flight mass spectrometry. , 1994, Analytical chemistry.

[32]  L. Konermann,et al.  Mass spectrometry-based approaches to protein–ligand interactions , 2005, Expert review of proteomics.

[33]  Mark W. Duncan,et al.  Practical quantitative biomedical applications of MALDI-TOF mass spectrometry , 2002, Journal of the American Society for Mass Spectrometry.

[34]  M. Vestal,et al.  Thermospray interface for liquid chromatography/mass spectrometry , 1983 .

[35]  M. Vestal Ionization techniques for nonvolatile molecules , 1983 .

[36]  M. D. Leavell,et al.  Mass spectrometry and immobilized enzymes for the screening of inhibitor libraries. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[37]  R. Newton,et al.  Quantitation by fast-atom bombardment/mass-analysed ion kinetic energy spectrometry: kinetic analysis of cyclic nucleotide phosphodiesterase activity. , 1989, Rapid communications in mass spectrometry : RCM.

[38]  N. Pohl,et al.  Kinetic and substrate binding analysis of phosphorylase b via electrospray ionization mass spectrometry: a model for chemical proteomics of sugar phosphorylases. , 2004, Analytical biochemistry.

[39]  J. W. Finch,et al.  Comparison of desorption/ionization on silicon (DIOS) time-of-flight and liquid chromatography/tandem mass spectrometry for assaying enzyme-inhibition reactions. , 2004, Rapid Communications in Mass Spectrometry.

[40]  M. Gross,et al.  Ionic-liquid matrices for quantitative analysis by MALDI-TOF mass spectrometry , 2004, Journal of the American Society for Mass Spectrometry.

[41]  M. Gelb,et al.  Tandem mass spectrometry for the direct assay of enzymes in dried blood spots: application to newborn screening for Krabbe disease. , 2004, Clinical chemistry.

[42]  C. Bertozzi,et al.  Kinetic measurements and mechanism determination of Stf0 sulfotransferase using mass spectrometry. , 2005, Analytical biochemistry.

[43]  M. Mann,et al.  Electrospray ionization for mass spectrometry of large biomolecules. , 1989, Science.

[44]  K. Rodland Proteomics and cancer diagnosis: the potential of mass spectrometry. , 2004, Clinical biochemistry.

[45]  M. Gelb,et al.  Quantification of cellular acid sphingomyelinase and galactocerebroside beta-galactosidase activities by electrospray ionization mass spectrometry. , 2001, Clinical chemistry.

[46]  Marie-Christine W. Gast,et al.  Clinical proteomics: searching for better tumour markers with SELDI-TOF mass spectrometry. , 2006, Trends in pharmacological sciences.

[47]  M. Roberfroid,et al.  Gas chromatographic and mass fragmentographic assays of carcinogenic polycyclic hydrocarbon epoxide hydratase activity. , 1977, Journal of chromatography.

[48]  H. Desaire,et al.  A strategy for the determination of enzyme kinetics using electrospray ionization with an ion trap mass spectrometer. , 2001, Analytical chemistry.

[49]  Michael Barber,et al.  Fast atom bombardment of solids (F.A.B.): a new ion source for mass spectrometry , 1981 .

[50]  J. Henion,et al.  Real-Time Reaction Monitoring by Continuous-Introduction Ion-Spray Tandem Mass Spectrometry , 1989 .

[51]  J. W. Finch,et al.  Quantification of codeine by desorption/ionization on silicon time-of-flight mass spectrometry and comparisons with liquid chromatography/mass spectrometry , 2004 .

[52]  G. Hopfgartner,et al.  Quantitative high-throughput analysis of drugs in biological matrices by mass spectrometry. , 2003, Mass spectrometry reviews.

[53]  M. Waterfield,et al.  Ultrasensitive and absolute quantification of the phosphoinositide 3-kinase/Akt signal transduction pathway by mass spectrometry. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[54]  M. Vestal,et al.  Liquid chromatograph-mass spectrometer for analysis of nonvolatile samples , 1980 .

[55]  Chung-Hsuan Chen,et al.  Quantitative analysis of biopolymers by matrix-assisted laser desorption , 1993 .

[56]  M. Karas,et al.  Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. , 1988, Analytical chemistry.

[57]  T. Yip,et al.  Bactericidal domain of lactoferrin: detection, quantitation, and characterization of lactoferricin in serum by SELDI affinity mass spectrometry. , 1998, Biochemical and biophysical research communications.

[58]  J. Leary,et al.  Multiplex inhibitor screening and kinetic constant determinations for yeast hexokinase using mass spectrometry based assays , 2003, Journal of the American Society for Mass Spectrometry.

[59]  Milan Mrksich,et al.  Profiling kinase activities by using a peptide chip and mass spectrometry. , 2004, Angewandte Chemie.

[60]  H. Irth,et al.  High-performance liquid chromatography-mass spectrometry-based acetylcholinesterase assay for the screening of inhibitors in natural extracts. , 2006, Journal of chromatography. A.

[61]  M. Mrksich,et al.  Chemical screening by mass spectrometry to identify inhibitors of anthrax lethal factor , 2004, Nature Biotechnology.

[62]  G. Siuzdak,et al.  Desorption/ionization on silicon (DIOS): A diverse mass spectrometry platform for protein characterization , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[63]  G. Deng,et al.  Applications of mass spectrometry in early stages of target based drug discovery. , 2006, Journal of pharmaceutical and biomedical analysis.

[64]  G. Siuzdak,et al.  Desorption–ionization mass spectrometry on porous silicon , 1999, Nature.

[65]  Thomas Letzel,et al.  On-line coupling of high-performance liquid chromatography to a continuous-flow enzyme assay based on electrospray ionization mass spectrometry. , 2004, Analytical chemistry.

[66]  Junefredo V. Apon,et al.  A Mass Spectrometry Plate Reader: Monitoring Enzyme Activity and Inhibition with a Desorption/Ionization on Silicon (DIOS) Platform , 2004, Chembiochem : a European journal of chemical biology.

[67]  R. Newton,et al.  Cytidylate cyclase activity: identification of cytidine 3',5'-cyclic monophosphate and four novel cytidine cyclic phosphates as biosynthetic products from cytidine triphosphate. , 1988, Rapid communications in mass spectrometry : RCM.

[68]  R. Caprioli,et al.  Enzyme reaction rates determined by fast atom bombardment mass spectrometry , 1984 .

[69]  R. Caprioli,et al.  Following enzyme catalysis in real‐time inside a fast atom bombardment mass spectrometer , 1983 .

[70]  B. Ganem,et al.  Kinetic monitoring of enzymatic reactions in real time by quantitative high-performance liquid chromatography-mass spectrometry. , 1995, Analytical biochemistry.

[71]  M. Mrksich,et al.  A method for connecting solution-phase enzyme activity assays with immobilized format analysis by mass spectrometry. , 2004, Analytical chemistry.

[72]  N. Pohl,et al.  General assay for sugar nucleotidyltransferases using electrospray ionization mass spectrometry. , 2004, Analytical biochemistry.

[73]  M. Gelb,et al.  Direct multiplex assay of lysosomal enzymes in dried blood spots for newborn screening. , 2004, Clinical chemistry.

[74]  E. Heinzle,et al.  Quantitation of low molecular mass substrates and products of enzyme catalyzed reactions using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 2000, Rapid communications in mass spectrometry : RCM.

[75]  T. Hutchens,et al.  Quantitative Determination of Proteins by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry , 1994 .

[76]  Henk Lingeman,et al.  A microfluidic-based enzymatic assay for bioactivity screening combined with capillary liquid chromatography and mass spectrometry. , 2005, Lab on a chip.

[77]  Arrin Katz,et al.  High throughput screening via mass spectrometry: a case study using acetylcholinesterase. , 2004, Assay and drug development technologies.

[78]  R. Caprioli Enzymes and mass spectrometry: A dynamic combination , 1987 .

[79]  Yonghao Yu,et al.  Observation of a hybrid random ping‐pong mechanism of catalysis for NodST: A mass spectrometry approach , 2004, Protein science : a publication of the Protein Society.

[80]  Andrew N. Carr,et al.  MALDI-TOF MS as a label-free approach to rapid inhibitor screening , 2006, Journal of the American Society for Mass Spectrometry.

[81]  E. Heinzle,et al.  Qualitative and quantitative analysis of low molecular weight compounds by ultraviolet matrix-assisted laser desorption/ionization mass spectrometry using ionic liquid matrices. , 2004, Rapid communications in mass spectrometry : RCM.

[82]  D. Armstrong,et al.  Ionic liquids as matrixes for matrix-assisted laser desorption/ionization mass spectrometry. , 2001, Analytical chemistry.

[83]  E. Fung,et al.  SELDI-TOF-MS proteomics of breast cancer , 2005, Clinical chemistry and laboratory medicine.

[84]  Thomas P Conrads,et al.  SELDI-TOF MS for diagnostic proteomics. , 2003, Analytical chemistry.

[85]  R. Caprioli,et al.  Determination of Km and Vmax for tryptic peptide hydrolysis using fast atom bombardment mass spectrometry , 1986 .

[86]  R. Ismagilov,et al.  Combining microfluidic networks and peptide arrays for multi-enzyme assays. , 2005, Journal of the American Chemical Society.

[87]  E. Heinzle,et al.  Quantitative matrix-assisted laser desorption/ionization mass spectrometry for the determination of enzyme activities. , 2004, Analytical biochemistry.

[88]  T. Yip,et al.  New desorption strategies for the mass spectrometric analysis of macromolecules , 1993 .

[89]  M. Vestal,et al.  A NEW SOFT IONIZATION TECHNIQUE FOR MASS SPECTROMETRY OF COMPLEX MOLECULES , 1980 .

[90]  C. Walsh,et al.  Mass spectrometric characterization of a three-enzyme tandem reaction for assembly and modification of the novobiocin skeleton. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[91]  Andreas Tholey,et al.  Quantification of peptides for the monitoring of protease-catalyzed reactions by matrix-assisted laser desorption/ionization mass spectrometry using ionic liquid matrixes. , 2006, Analytical chemistry.

[92]  P. Durand,et al.  Monitoring enzyme-catalyzed production of glucosamine-6P by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: a new enzymatic assay for glucosamine-6P synthase. , 2006, Rapid communications in mass spectrometry : RCM.

[93]  Henk Lingeman,et al.  High-temperature liquid chromatography coupled on-line to a continuous-flow biochemical screening assay with electrospray ionization mass spectrometric detection. , 2005, Analytical chemistry.

[94]  U. Karst,et al.  Monitoring enzymatic conversions by mass spectrometry: a critical review , 2005, Analytical and bioanalytical chemistry.

[95]  E. Petricoin,et al.  SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer. , 2004, Current opinion in biotechnology.

[96]  W. Vandenheuvel,et al.  Identification of N,N-dimethyltryptamine as the product of an in vitro enzymic methylation. , 1972, Analytical biochemistry.